Spg002238 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002238
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	rRNA biogenesis protein RRP5
Location	scaffold1: 31239353 .. 31245251 (-)
RNA-Seq Expression	Spg002238
Synteny	Spg002238

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGTGGGATTGAGGAGGAACTCTTCGATCCACACTCTCAGATCCGAGTAGCTAATCCTCTGCTGCCCAAACGCATCAAAGAAAAGGTCCCAACTAGTGCGGGTAAAATCGCAACTCCAAAGAATATGATCCAAATCTTCCCTTGCCTTCCAACAAAGCATGCAACAAAAGGGGCCAACCAAAGGAACATTCCTTCTCAAGAGCCCGTCAAAGGTATTAACTCTACCATGGAGAACTTGCCGAACAAAAAACCTAACCTTCTTCGGCACTTTCACCTTCCACAGAAGAGAAAAGATAGACTCGCTATAGGGCGGAGGATTCAACAAAGAAGTAAAGTAGGATTTACATTAGAACTCGTCAAAAGGATCAGGGCTCCAACAATGAAAATCTCTCCTCCCCAACCTAAAGTCAAACTCCTCTATCAAGGAAAGAAGAGCCATGACATCCGTAGTTTCCCTATCGGACAAATCATGGCAGAACCCAAACGAAAAAGACGGGAGCTCCTTAAATGGAACAAAACGTCGGCCACTGAACGGTTTTTCATGGAGGAAACCTGAAAGAGATGAGGGAAAGTAAGATAGAGGGGTCTATCCCCCACCCACCTATCCTCCCAGAAATATGTATCATTTCCATCTCCAACTACATGATACACAAGACCAGAAAGGAGGGGAGCTCTATGACAATATCTTACAATAGGTTTCTAAACGTGCCACTAACCCCACCCAATAACCACTCAGAAGGATGAGAACCATATTTAATCACAATTATCTTGTACCGCAAGGAGGACAACTCAAGGGGAAAATGCCACAACCATTTCGCTAATAGGGCTTTGTTACGGGTTTTAAGGTTAACCAATCTCTAGACCTCCAAGGTGAATAGGTTTTCCCATAATCTAATACAGAGCTTAAGACAACCTCATATTCAATTTATCTTCCTTAACAAAACTTTGCTCATTATCATTTAGGTTTTTTGATCGTGGAATAATATGGAGTTTTCATCTTTTTTTTTAAGCACTCAACTTTTCATTTTTTCCTCCAATTGGTCCTTTCCAAAATTATTATCCTTCCACTCGAACTTCAACAAGATTTTTTTGCACCTAGCTAAGTGAGGTGAGGCAAGAAGGGTGATTGCAATTTGACCTTCTTTCTTTGTATGGTGAATGGTAGAAGACTACGGAGAATGACAAGGATGAGTTGGTAAAGAGGGAGAAGAAGGTCAAGGAGGAGATTATCTCTTTTTTCTCGACCCTTTATGGTCTGGAACTGGTAGTTGATTTAGGGCTGCAAAAATCGTGAGGAGCAAGGAAGAAGTAGATGAATAGTGATTTGGCTTGGCTTGGTTACATAAGGCTGCGTGTGGCTAAAAAGAAGGGATAGGCTTGATCCAAAGTCTTCAAAATTACAAGTTTGCCATGGATCCTAATTTAAATTGAAAAAACCATAAAAAAATAAATTCCAATTAAATTACTTCCTTTAAACTAATTACTTGGAATTAGTTCAACTAAACTTGAAATTTGAGAAATTGAATTTTTCCTCAACTTTTCGACGTTACAATTACATAAGGTTCATATGATTAATTACATAAAATAAATACAGACATAATTGATTCTCATAAAATTCTAATGACATTCCCATGCACAATCAAACACAATTATCTCTGATTCCTAGTTATCTTATTTCTAGACATATTATTCCTAGACATCAGCAAAACCTTAAACCAAATGGCCCTTTAGGGGTATTGAGAGAGACCTTTGTGATGTTTGGTTTCACACTAGGTTTCTTGTTTCTCTTTGGTTGTCAGCGACATAGTTGTTTTGTAATTACTTGTTAGGTCTAATCTTACTAGATTGGAGTCTCTTCCTTTATTGAGACTTCCTTTTGGGGCTTGCTTTTTTTGATGTCCCACCCAGTATTCTTTCATTTTTTTTCCTCAAAGTTGGTTTCTTATCCTTTTTTTTTGCTGCTTTTCCCAAATAATTAGACCTCTGGCCTCTTCAACTGTATGATCAAGGGATATTATAGTTGATATAGTTTTGGTTCGAGGTTTTACTTTATTACATTGTGTTGTGAAAGTAATTATGGCATTTTTTTGGGTTTTATTTCTTCTTCTTACCCTTTTTTTCTTTGTTTAGTAAACAGTTGGTTATATTTACAAATTGATGCTCCTGTGCGATATGAGCTCATTTAATGTATAGAACATTTTCTGATTTTTGACAGGCGAGTGCCTTTGAAGGTCCAGTGTTTTCCTACACAGATGTAAAGCCTGGAACATTGATACGTGCTAAAGTTATAATTGTTGATGATTTTGGTGCTATCGTGCAATTTCCTGGTGGTCTCAAGGCTCTGTGTCCTCTTAGTCACATGTCTGAATTTGAAATTGCTAAACCTCGAAAAAAGTTTAAGGTAATTATTTTGAACTGTTCCATTCAATAAATAATATAATCAGTTATCGGTTCCAGTGCAATAAAATCCATTTTTTTGTTACATATGGCAAGAGATAAATAAAACAACTTTTCAAGAACAGTATGGTAAAGGGAATCATCTGGGAATCTGTTATTTGGTCTGCTTCTTATTGGATTTCCTCTAAAGCTTTTGGTAACAATTGTCCTTGTTTTATTGCTTCTAGTAGGAAAGTTGTTTTTTGTAACATCAATAAAATTTATTTCTTATGCAGAAAGGGTAGATTCAGTTCTTATATATTTATATAGGCTTAGAAATGACTTTTAGATGGTTTGAATTTACAACAAAGGGGAGGAACATTAAGTCTAAAGCCAAATTACAAAAACTAATCCAATTGGCACAAATATCAGTAATATCTTGTTTTTGAAAGGGTGACCCATGAAAATCTTTTTTTGTCTTTTACAAGAAATGAAACTTTTCATTGAAGTAATGAAAAGAAACCAATGTTCAAAGGATACAAACTCCACAAGGGAGTGAAAACTCATGAAAATCTTAGAAAAAGGATGGTAGTGTCTCTTATATTTTCTCTGATAATCAATGTGAATGACTGCATTATGTGTTAGTGTTACATAGGAAACTATATTGGTTCTTGTTCTGCTATGATTTCATGTAATGTTTCTTGGTTTTGAAACTTCAAATTTTGTTGCCATTGTAAATATGTAGGTTGGAGCTGAATTAATTTTCCGTGTGCTTGGTTGCAAGTCGAAGAGAATAACTGTTACACACAAGAAGGCACTTGTATGTTCCATTTAGCCCTAATATTGCGTTTATCTTACCTTACCTGTGTATATGGCTCCTTGAATCATATAAAATATAATTTCTTTTGTTGTTTATTAGTTTGTCATGGGTTTCAGATACAACATTTCAGCTACTCTGTTCTTTTTAAAATTAATTTTCTTTCCATGCTCATATATGCTCATATACAGATAGTACTACAATGAAGACTCAGACGATCTCATATTTTAACCTAGAATTATGTGTTTCCAACAAAGCAGTAGATCGTTATGCTATTTATGTAGGCTGTGTTTGTACCTTTTCCTCCCTTTGCCAATGTACCATTTTGTAAGCTGCAATGATTTTGTTGCTTCTTAAATATGGTTTGTATTTAAAATTCCCCAAGTATTTATTATCTTTCAGTCTAAGTAATATATATACATGGAAAAACCACGGTTAATGAAGTTTACCAGGCATTTTGAGGGGAAAATTAAATGATTTGCATAGGAAGAAAGAGTCTTCATGGAGAATTTAGAGAGCCTTATTTCCATTTTTTTTATGTTTCCTTTTTTTGATAATCAAGGGATTAAGGGTCTACTTCTTGTGGTTTTACTCATGATCCACCTTCATTAATTTTTCAGAGGCTTCGCCCAACTTAGGGCTAAGTAAGCTCAAGAGGCAACGGATATTTTAGTTTATTAAGCTTTCTACCTGAAGGTCCAGGAGCTTAGAATCTCTCCATATGGTCATCTCCAAACTAATTTAGTGAATTTTATTAAATGTAAAAAATCAGAGATCCATTGTTCACACAGGCTGTCTGCACTATTTCATTAAGCTTGGACAAAGTATTCTCTTTGTTATGATACTCTGCAGTCTGCACTAGTTAATTAAGCTTTAATTGTCATGTTCAACTCATTTTAGTTCCAACTACTTTGAAGTTAGGTTCTTCCCTTCAGGATTCTCATAACCTGCATGTCAGTATCTTTTTAATTATTCTGATACATGCATGCCAATTTACAGGTAAAATCAAAATTGGAGGTTCTTAGTTCATATGCTGATGCTACTGCAGGATTAGTGACACATGGCTGGATTACGAAGATTGAAAGACATGGTTGTTTTGTCAGGTTTTACAATGGTGTTCAAGGTTTTGCTCCTAGGCAAGTCTGCTGCAGCATCCATATAACTTTTGAACTTGTTATCTTTCTGTGTTTTGACTTAACTATAAGTTTCTTGTTCTTGAGATTTTGCTTATTGCAGTAACGAATACAGTCATTTCATTTTTGGCAGTGTGTAAGCAATTACACCTTACAAATATATTTGATGCAGTAATAATATTTTGACTTCAGACGTTGCCATTGTGAACTTTATCTTGTTCATTTTCTCTGTTCCAAATTTTCATTTGCAACTTACAAGATAGGAATTAAGTTACTCCCCTATTCTTTTGGTCTCAACTGACTCGTGGGAAATCCTAGGTGTATAAATTATTGTTATTTTCCCCGTTTGTTTGCTGTTTGTTCGTTTGTTTGTAGCAACTTCAATTAGAGTGCATTTGCTTGAATTTATAACGAGGATGAAAATTGCTAATGCTTGTAATAAAAAAAAAGAAAAGAAAAGAAGAAAATTGCTAATGCTATTAAATTTCTCTACATTCTCGTGTAGCAAATTCATGTATACAGTTATTTTTTGGTTCTTTATGTGGAAGTTCTGTATTGTTCGCTCATTGTATATCTAAAATTTTCCATTCTTATTCAGATTTGAACTCGGAATAGAACCTGGTTCTGATCCAAGTTCAACATATCATATTGGGCAAGTCATCAAATGTAGAATAACAAGCTCTTCTCCTTCCTCCAAGCGTATTAGCCTTAGTTTTGTAATGAAGCCTGCAAGGTTTGATTCTATTTACCTCTTATTCAGATGGGTGTGGTCATTTCATTTCTACATATCGAACTGTTGGATATAGAGCATGATTAATGCGCCTTTGAGATTTTAGAAGTCAAGTTGGTAAATAAACAAATAAGTGCAAGAAGTGATCATGTACTGTTTACTTCTGCTAATTGGAATGCTGGTTTCTATAAAGTTGCTGGTTTCTTAGCCAAAAAATAGATGTAGGTAAGTCATAAGTGTAATACAAATATCCATCGAGATGAAAAAAATAACCAGAGTTGTGAATGGGGAACTACTAGGAAATAGGGAAAATAGATTGACACCAGTTGTTAGTCATCCTGAGCAAACAAAAATTACTATTGCTTATGATTTTCTTCAATAGAAAAAAGATTTGCAGAATTTGTTATTACATGGACTTGAAGTTCTTACCCTTGTCATTATCATTGGAGAACTCAATTACAGGGTTTCTGAAGATGCAAAGGTTGAGTTGGGTTGCATTGTTTCGGGTGTGGTTGATGAAATAACCCAGACCCATGTAACATTATATATTAATAGAACCGGTTACTCAAGGGGAAGGATATCCACTGAACATTTGTCAGATCATCAGGGTATATATCTATCTTTAGCATGCATGAATGTGTATTTTTCCTTTTTTTCCTTTTATTTATTTATTTATTTTTTATAGATGTTATGTTTTACTTAATTTCCTAATCAGTGACGTTTACTTACAGCGCATGCTGCTTTGATGAAGTCTGTGTTGAAGCCTGGCTATCAATTTGAACAACTCCTTGTACTAGGTAATTTTATTTTTTCAAATTCTTTTCAACTTCAAGTTTAA

mRNA sequence

ATGGATAGTGGGATTGAGGAGGAACTCTTCGATCCACACTCTCAGATCCGAGTAGCTAATCCTCTGCTGCCCAAACGCATCAAAGAAAAGGTCCCAACTAGTGCGGGTAAAATCGCAACTCCAAAGAATATGATCCAAATCTTCCCTTGCCTTCCAACAAAGCATGCAACAAAAGGGGCCAACCAAAGGAACATTCCTTCTCAAGAGCCCGTCAAAGGTATTAACTCTACCATGGAGAACTTGCCGAACAAAAAACCTAACCTTCTTCGGCACTTTCACCTTCCACAGAAGAGAAAAGATAGACTCGCTATAGGGCGGAGGATTCAACAAAGAAGTAAAAAGACTACGGAGAATGACAAGGATGAGTTGGTAAAGAGGGAGAAGAAGGTCAAGGAGGAGATTATCTCTTTTTTCTCGACCCTTTATGGTCTGGAACTGGCGAGTGCCTTTGAAGGTCCAGTGTTTTCCTACACAGATGTAAAGCCTGGAACATTGATACGTGCTAAAGTTATAATTGTTGATGATTTTGGTGCTATCGTGCAATTTCCTGGTGGTCTCAAGGCTCTGTGTCCTCTTAGTCACATGTCTGAATTTGAAATTGCTAAACCTCGAAAAAAGTTTAAGGTTGGAGCTGAATTAATTTTCCGTGTGCTTGGTTGCAAGTCGAAGAGAATAACTGTTACACACAAGAAGGCACTTGTAAAATCAAAATTGGAGGTTCTTAGTTCATATGCTGATGCTACTGCAGGATTAGTGACACATGGCTGGATTACGAAGATTGAAAGACATGGTTGTTTTGTCAGGTTTTACAATGGTGTTCAAGGTTTTGCTCCTAGGCAAGTCTGCTGCAGCATCCATATAACTTTTGAACTTGTTATCTTTCTATTTGAACTCGGAATAGAACCTGGTTCTGATCCAAGTTCAACATATCATATTGGGCAAGTCATCAAATGTAGAATAACAAGCTCTTCTCCTTCCTCCAAGCGTATTAGCCTTAGTTTTGTAATGAAGCCTGCAAGGGTTTCTGAAGATGCAAAGGTTGAGTTGGGTTGCATTGTTTCGGGTGTGGTTGATGAAATAACCCAGACCCATGTAACATTATATATTAATAGAACCGGTTACTCAAGGGGAAGGATATCCACTGAACATTTGTCAGATCATCAGGCGCATGCTGCTTTGATGAAGTCTGTGTTGAAGCCTGGCTATCAATTTGAACAACTCCTTGTACTAGGTAATTTTATTTTTTCAAATTCTTTTCAACTTCAAGTTTAA

Coding sequence (CDS)

ATGGATAGTGGGATTGAGGAGGAACTCTTCGATCCACACTCTCAGATCCGAGTAGCTAATCCTCTGCTGCCCAAACGCATCAAAGAAAAGGTCCCAACTAGTGCGGGTAAAATCGCAACTCCAAAGAATATGATCCAAATCTTCCCTTGCCTTCCAACAAAGCATGCAACAAAAGGGGCCAACCAAAGGAACATTCCTTCTCAAGAGCCCGTCAAAGGTATTAACTCTACCATGGAGAACTTGCCGAACAAAAAACCTAACCTTCTTCGGCACTTTCACCTTCCACAGAAGAGAAAAGATAGACTCGCTATAGGGCGGAGGATTCAACAAAGAAGTAAAAAGACTACGGAGAATGACAAGGATGAGTTGGTAAAGAGGGAGAAGAAGGTCAAGGAGGAGATTATCTCTTTTTTCTCGACCCTTTATGGTCTGGAACTGGCGAGTGCCTTTGAAGGTCCAGTGTTTTCCTACACAGATGTAAAGCCTGGAACATTGATACGTGCTAAAGTTATAATTGTTGATGATTTTGGTGCTATCGTGCAATTTCCTGGTGGTCTCAAGGCTCTGTGTCCTCTTAGTCACATGTCTGAATTTGAAATTGCTAAACCTCGAAAAAAGTTTAAGGTTGGAGCTGAATTAATTTTCCGTGTGCTTGGTTGCAAGTCGAAGAGAATAACTGTTACACACAAGAAGGCACTTGTAAAATCAAAATTGGAGGTTCTTAGTTCATATGCTGATGCTACTGCAGGATTAGTGACACATGGCTGGATTACGAAGATTGAAAGACATGGTTGTTTTGTCAGGTTTTACAATGGTGTTCAAGGTTTTGCTCCTAGGCAAGTCTGCTGCAGCATCCATATAACTTTTGAACTTGTTATCTTTCTATTTGAACTCGGAATAGAACCTGGTTCTGATCCAAGTTCAACATATCATATTGGGCAAGTCATCAAATGTAGAATAACAAGCTCTTCTCCTTCCTCCAAGCGTATTAGCCTTAGTTTTGTAATGAAGCCTGCAAGGGTTTCTGAAGATGCAAAGGTTGAGTTGGGTTGCATTGTTTCGGGTGTGGTTGATGAAATAACCCAGACCCATGTAACATTATATATTAATAGAACCGGTTACTCAAGGGGAAGGATATCCACTGAACATTTGTCAGATCATCAGGCGCATGCTGCTTTGATGAAGTCTGTGTTGAAGCCTGGCTATCAATTTGAACAACTCCTTGTACTAGGTAATTTTATTTTTTCAAATTCTTTTCAACTTCAAGTTTAA

Protein sequence

MDSGIEEELFDPHSQIRVANPLLPKRIKEKVPTSAGKIATPKNMIQIFPCLPTKHATKGANQRNIPSQEPVKGINSTMENLPNKKPNLLRHFHLPQKRKDRLAIGRRIQQRSKKTTENDKDELVKREKKVKEEIISFFSTLYGLELASAFEGPVFSYTDVKPGTLIRAKVIIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHKKALVKSKLEVLSSYADATAGLVTHGWITKIERHGCFVRFYNGVQGFAPRQVCCSIHITFELVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPSSKRISLSFVMKPARVSEDAKVELGCIVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSDHQAHAALMKSVLKPGYQFEQLLVLGNFIFSNSFQLQV

Homology

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BLAST of Spg002238 vs. NCBI nr
Match: XP_008442208.1 (PREDICTED: LOW QUALITY PROTEIN: rRNA biogenesis protein RRP5 [Cucumis melo])

HSP 1 Score: 469.2 bits (1206), Expect = 3.9e-128
Identity = 236/264 (89.39%), Postives = 246/264 (93.18%), Query Frame = 0


Query: 147 ASAFEGPVFSYTDVKPGTLIRAKVIIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKK 206
           ASAFEGPVFSY+DVKPGTLIRAKVI+VDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKK
Sbjct: 472 ASAFEGPVFSYSDVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKK 531

Query: 207 FKVGAELIFRVLGCKSKRITVTHKKALVKSKLEVLSSYADATAGLVTHGWITKIERHGCF 266
           FKVGAELIFRVLGCKSKRITVTHKK LVKSKLEVLSSYADATAGLVTHGWITKIE+HGCF
Sbjct: 532 FKVGAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIEKHGCF 591

Query: 267 VRFYNGVQGFAPRQVCCSIHITFELVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPS 326
           VRFYNGVQGFAPR                FELGIEPGSDPSSTYHIGQVIKCRITSS+PS
Sbjct: 592 VRFYNGVQGFAPR----------------FELGIEPGSDPSSTYHIGQVIKCRITSSTPS 651

Query: 327 SKRISLSFVMKPARVSEDAKVELGCIVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSD 386
           SKRISLSFVMKPARVSED KV+LGCIV+GVVDEIT+THVTLYINRTGYSRGRISTEHLSD
Sbjct: 652 SKRISLSFVMKPARVSEDTKVDLGCIVTGVVDEITETHVTLYINRTGYSRGRISTEHLSD 711

Query: 387 HQAHAALMKSVLKPGYQFEQLLVL 411
           HQAHA+LMK+VLKPGYQF+QLLVL
Sbjct: 712 HQAHASLMKAVLKPGYQFDQLLVL 719

[Close]

BLAST of Spg002238 vs. NCBI nr
Match: TYK02426.1 (rRNA biogenesis protein RRP5 [Cucumis melo var. makuwa])

HSP 1 Score: 469.2 bits (1206), Expect = 3.9e-128
Identity = 236/264 (89.39%), Postives = 246/264 (93.18%), Query Frame = 0


Query: 147 ASAFEGPVFSYTDVKPGTLIRAKVIIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKK 206
           ASAFEGPVFSY+DVKPGTLIRAKVI+VDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKK
Sbjct: 392 ASAFEGPVFSYSDVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKK 451

Query: 207 FKVGAELIFRVLGCKSKRITVTHKKALVKSKLEVLSSYADATAGLVTHGWITKIERHGCF 266
           FKVGAELIFRVLGCKSKRITVTHKK LVKSKLEVLSSYADATAGLVTHGWITKIE+HGCF
Sbjct: 452 FKVGAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIEKHGCF 511

Query: 267 VRFYNGVQGFAPRQVCCSIHITFELVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPS 326
           VRFYNGVQGFAPR                FELGIEPGSDPSSTYHIGQVIKCRITSS+PS
Sbjct: 512 VRFYNGVQGFAPR----------------FELGIEPGSDPSSTYHIGQVIKCRITSSTPS 571

Query: 327 SKRISLSFVMKPARVSEDAKVELGCIVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSD 386
           SKRISLSFVMKPARVSED KV+LGCIV+GVVDEIT+THVTLYINRTGYSRGRISTEHLSD
Sbjct: 572 SKRISLSFVMKPARVSEDTKVDLGCIVTGVVDEITETHVTLYINRTGYSRGRISTEHLSD 631

Query: 387 HQAHAALMKSVLKPGYQFEQLLVL 411
           HQAHA+LMK+VLKPGYQF+QLLVL
Sbjct: 632 HQAHASLMKAVLKPGYQFDQLLVL 639

[Close]

BLAST of Spg002238 vs. NCBI nr
Match: XP_022925023.1 (rRNA biogenesis protein RRP5 [Cucurbita moschata])

HSP 1 Score: 466.8 bits (1200), Expect = 1.9e-127
Identity = 247/300 (82.33%), Postives = 259/300 (86.33%), Query Frame = 0


Query: 120 KDELVKREKKVKEEI-----ISFFSTLYGLEL----ASAFEGPVFSYTDVKPGTLIRAKV 179
           +D + K  KK KE       I  F  L GL +    ASAFEGPVFSY+DVKPGTLIRAKV
Sbjct: 447 EDAVKKTGKKFKEGSHVRVRILGFRHLEGLAIGTLKASAFEGPVFSYSDVKPGTLIRAKV 506

Query: 180 IIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK 239
           I+VD+FGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK
Sbjct: 507 IVVDNFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK 566

Query: 240 KALVKSKLEVLSSYADATAGLVTHGWITKIERHGCFVRFYNGVQGFAPRQVCCSIHITFE 299
           KALVKSKLEVLSSYADATAGLVTHGWITKIE+HGCFV+FYNGVQGFAPR           
Sbjct: 567 KALVKSKLEVLSSYADATAGLVTHGWITKIEKHGCFVKFYNGVQGFAPR----------- 626

Query: 300 LVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPSSKRISLSFVMKPARVSEDAKVELG 359
                FELGIEPGSDPSSTYHIGQVIKCRITSS+PSSKRISLSFVMKPARVSEDAKVELG
Sbjct: 627 -----FELGIEPGSDPSSTYHIGQVIKCRITSSTPSSKRISLSFVMKPARVSEDAKVELG 686

Query: 360 CIVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSDHQAHAALMKSVLKPGYQFEQLLVL 411
           CIVSGVVDEIT+THVTLYINR+ YSRGRIS EHLSDHQ HAALMKSVLKPGYQF+QLLVL
Sbjct: 687 CIVSGVVDEITETHVTLYINRSSYSRGRISVEHLSDHQGHAALMKSVLKPGYQFDQLLVL 730

[Close]

BLAST of Spg002238 vs. NCBI nr
Match: KAG6595619.1 (rRNA biogenesis protein RRP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 466.8 bits (1200), Expect = 1.9e-127
Identity = 247/300 (82.33%), Postives = 259/300 (86.33%), Query Frame = 0


Query: 120 KDELVKREKKVKEEI-----ISFFSTLYGLEL----ASAFEGPVFSYTDVKPGTLIRAKV 179
           +D + K  KK KE       I  F  L GL +    ASAFEGPVFSY+DVKPGTLIRAKV
Sbjct: 447 EDAVKKTGKKFKEGSHVRVRILGFRHLEGLAIGTLKASAFEGPVFSYSDVKPGTLIRAKV 506

Query: 180 IIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK 239
           I+VD+FGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK
Sbjct: 507 IVVDNFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK 566

Query: 240 KALVKSKLEVLSSYADATAGLVTHGWITKIERHGCFVRFYNGVQGFAPRQVCCSIHITFE 299
           KALVKSKLEVLSSYADATAGLVTHGWITKIE+HGCFV+FYNGVQGFAPR           
Sbjct: 567 KALVKSKLEVLSSYADATAGLVTHGWITKIEKHGCFVKFYNGVQGFAPR----------- 626

Query: 300 LVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPSSKRISLSFVMKPARVSEDAKVELG 359
                FELGIEPGSDPSSTYHIGQVIKCRITSS+PSSKRISLSFVMKPARVSEDAKVELG
Sbjct: 627 -----FELGIEPGSDPSSTYHIGQVIKCRITSSTPSSKRISLSFVMKPARVSEDAKVELG 686

Query: 360 CIVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSDHQAHAALMKSVLKPGYQFEQLLVL 411
           CIVSGVVDEIT+THVTLYINR+ YSRGRIS EHLSDHQ HAALMKSVLKPGYQF+QLLVL
Sbjct: 687 CIVSGVVDEITETHVTLYINRSSYSRGRISVEHLSDHQGHAALMKSVLKPGYQFDQLLVL 730

[Close]

BLAST of Spg002238 vs. NCBI nr
Match: XP_023517465.1 (rRNA biogenesis protein RRP5 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023517466.1 rRNA biogenesis protein RRP5 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 466.8 bits (1200), Expect = 1.9e-127
Identity = 247/300 (82.33%), Postives = 259/300 (86.33%), Query Frame = 0


Query: 120 KDELVKREKKVKEEI-----ISFFSTLYGLEL----ASAFEGPVFSYTDVKPGTLIRAKV 179
           +D + K  KK KE       I  F  L GL +    ASAFEGPVFSY+DVKPGTLIRAKV
Sbjct: 447 EDAVKKTGKKFKEGSHVRVRILGFRHLEGLAIGTLKASAFEGPVFSYSDVKPGTLIRAKV 506

Query: 180 IIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK 239
           I+VD+FGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK
Sbjct: 507 IVVDNFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK 566

Query: 240 KALVKSKLEVLSSYADATAGLVTHGWITKIERHGCFVRFYNGVQGFAPRQVCCSIHITFE 299
           KALVKSKLEVLSSYADATAGLVTHGWITKIE+HGCFV+FYNGVQGFAPR           
Sbjct: 567 KALVKSKLEVLSSYADATAGLVTHGWITKIEKHGCFVKFYNGVQGFAPR----------- 626

Query: 300 LVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPSSKRISLSFVMKPARVSEDAKVELG 359
                FELGIEPGSDPSSTYHIGQVIKCRITSS+PSSKRISLSFVMKPARVSEDAKVELG
Sbjct: 627 -----FELGIEPGSDPSSTYHIGQVIKCRITSSTPSSKRISLSFVMKPARVSEDAKVELG 686

Query: 360 CIVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSDHQAHAALMKSVLKPGYQFEQLLVL 411
           CIVSGVVDEIT+THVTLYINR+ YSRGRIS EHLSDHQ HAALMKSVLKPGYQF+QLLVL
Sbjct: 687 CIVSGVVDEITETHVTLYINRSSYSRGRISVEHLSDHQGHAALMKSVLKPGYQFDQLLVL 730

[Close]

BLAST of Spg002238 vs. ExPASy Swiss-Prot
Match: F4J8K6 (rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana OX=3702 GN=RRP5 PE=2 SV=2)

HSP 1 Score: 350.1 bits (897), Expect = 3.4e-95
Identity = 181/314 (57.64%), Postives = 225/314 (71.66%), Query Frame = 0


Query: 121 DELVKREKKVKE-----EIISFFSTLYGLELA----SAFEGPVFSYTDVKPGTLIRAKVI 180
           DE+ K EKK KE       +     + GL +     SAFEGPVF+++DVKPG + +AKVI
Sbjct: 439 DEVTKLEKKFKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVI 498

Query: 181 IVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHKK 240
            VD FGAIVQF GGLKA+CPL HMSEFE+ KPRKKFKVGAEL+FRVLGCKSKRITVT+KK
Sbjct: 499 SVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVLGCKSKRITVTYKK 558

Query: 241 ALVKSKLEVLSSYADATAGLVTHGWITKIERHGCFVRFYNGVQGFAPRQVCCSIHITFEL 300
            LVKSKL +LSSY DAT GLVTHGWITKIE+HGCFVRFYNGVQGF PR            
Sbjct: 559 TLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPR------------ 618

Query: 301 VIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPSSKRISLSFVMKPARVSEDAKVELGC 360
               FELG+EPGSDP S +H+G+V+KCR+TS+   ++RI+LSF++KP+ VSED  ++LG 
Sbjct: 619 ----FELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSEDDSIKLGS 678

Query: 361 IVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSDHQAHAALMKSVLKPGYQFEQLLVL- 420
           IVSG++D IT   V + +      +G IS EHL+DH   A L+ S+L+PGY+ ++LLVL 
Sbjct: 679 IVSGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLD 736

Query: 421 ---GNFIFSNSFQL 422
               N   S+ + L
Sbjct: 739 IEGNNMALSSKYSL 736

[Close]

BLAST of Spg002238 vs. ExPASy Swiss-Prot
Match: Q14690 (Protein RRP5 homolog OS=Homo sapiens OX=9606 GN=PDCD11 PE=1 SV=3)

HSP 1 Score: 138.7 bits (348), Expect = 1.6e-31
Identity = 86/275 (31.27%), Postives = 144/275 (52.36%), Query Frame = 0


Query: 148 SAFEGPVFSYTDVKPGTLIRAKVIIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKF 207
           S  E     Y D++PG +++  V+ +  +G +V+    ++ L P  H+++  +  P KK+
Sbjct: 438 SIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKY 497

Query: 208 KVGAELIFRVLGC--KSKRITVTHKKALVKSKLEVLSSYADATAGLVTHGWITKIERHGC 267
            +G E+  RVL C  ++K++ +T KK L++SKL V++ YADA  GL THG+I +++ +GC
Sbjct: 498 HIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGC 557

Query: 268 FVRFYNGVQGFAPRQVCCSIHITFELVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSP 327
            V+FYN VQG  P+                 EL  E   DP   ++ GQV+K  + +  P
Sbjct: 558 IVKFYNNVQGLVPKH----------------ELSTEYIPDPERVFYTGQVVKVVVLNCEP 617

Query: 328 SSKRISLSFVM--------KPARVSE--DAKVELGCIVSGVVDEITQTHVTLYINRTGYS 387
           S +R+ LSF +        +PA  S+     + +G +V   V E T+  + + +      
Sbjct: 618 SKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI- 677

Query: 388 RGRISTEHLSDHQAHAALMKSVLKPGYQFEQLLVL 411
           R  + T HLSDH A+  L+   L+ G    ++L L
Sbjct: 678 RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCL 695

[Close]

BLAST of Spg002238 vs. ExPASy Swiss-Prot
Match: Q6NS46 (Protein RRP5 homolog OS=Mus musculus OX=10090 GN=Pdcd11 PE=1 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 6.0e-31
Identity = 89/278 (32.01%), Postives = 140/278 (50.36%), Query Frame = 0


Query: 148 SAFEGPVFSYTDVKPGTLIRAKVIIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKF 207
           S    P   Y D+K GT+++  V+ +  FG +V+    +K L P  H+++  +  P KK+
Sbjct: 438 SIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKY 497

Query: 208 KVGAELIFRVLGC--KSKRITVTHKKALVKSKLEVLSSYADATAGLVTHGWITKIERHGC 267
             G E+  RVL C  ++K++ +T KK LV SKL +++ Y  A  GL THG I +++ +GC
Sbjct: 498 SPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHGVIIRVKDYGC 557

Query: 268 FVRFYNGVQGFAPRQVCCSIHITFELVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSP 327
            V+FYN VQG  P+    + HI                 DP + ++ GQV+K  + S  P
Sbjct: 558 IVKFYNDVQGLVPKHELSTQHI----------------PDPETVFYTGQVVKVAVLSCEP 617

Query: 328 SSKRISLSFVMKPARVSEDAKVE----------LGCIVSGVVDEITQTHVTLYI---NRT 387
           S +R+ LSF +      +D  VE          +G +V   V E T+T + + I   N  
Sbjct: 618 SKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHNTP 677

Query: 388 GYSRGRISTEHLSDHQAHAALMKSVLKPGYQFEQLLVL 411
            +    + T HLSDH A+  L+   L+ G    ++L L
Sbjct: 678 AF----LPTPHLSDHAANGPLLHHWLQTGDTLHRVLCL 695

[Close]

BLAST of Spg002238 vs. ExPASy Swiss-Prot
Match: A7MB10 (Protein RRP5 homolog OS=Bos taurus OX=9913 GN=PDCD11 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.8e-31
Identity = 109/328 (33.23%), Postives = 158/328 (48.17%), Query Frame = 0


Query: 97  KRKD-RLAIGRRIQQRSKKTTENDKDELVKREKKVKEEIISF--FSTLYGLEL-ASAFEG 156
           K KD  LA  RR    + K T   K E  K     K  II +     L  L L  S  E 
Sbjct: 385 KLKDGTLAYARRNHLSNSKKT--FKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEA 444

Query: 157 PVFSYTDVKPGTLIRAKVIIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAE 216
               Y D+KPG L++ KV+ +   G +V+    ++ L P  H+++  I  P KK+ VG E
Sbjct: 445 QFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDE 504

Query: 217 LIFRVLGC--KSKRITVTHKKALVKSKLEVLSSYADATAGLVTHGWITKIERHGCFVRFY 276
           +  RVL C  K+K++ +T KK LV+SKL  ++ Y DA  GL THG+I +++ +GC V+FY
Sbjct: 505 VKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFY 564

Query: 277 NGVQGFAPRQVCCSIHITFELVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPSSKRI 336
           N VQG  PR                 EL  E   DP S ++ GQV+K  + +  PS +R+
Sbjct: 565 NDVQGLVPRH----------------ELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERM 624

Query: 337 SLSF--VMKPARVSEDAK------VELGCIVSGVVDEITQTHVTLYINRTGYSRGRISTE 396
            LSF  +  P +  E         V  G +    V E T+  + + +       G + T 
Sbjct: 625 LLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIP-GFLPTA 684

Query: 397 HLSDHQAHAALMKSVLKPGYQFEQLLVL 411
           HLSDH  +  L+   L+ G    ++L L
Sbjct: 685 HLSDHVTNGPLLYHWLQTGDTLHRVLCL 693

[Close]

BLAST of Spg002238 vs. ExPASy Swiss-Prot
Match: Q05022 (rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRP5 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-06
Identity = 61/244 (25.00%), Postives = 104/244 (42.62%), Query Frame = 0


Query: 182 FPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSK-RITVTHKKALVK---SK 241
           F G  KA  P  H+S+  +  P +KFK+G+++  RV+   S+  + VT KK+LV    ++
Sbjct: 531 FNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNE 590

Query: 242 LEVLSSYADA----TAGLVTHGWITKIERHGCFVRFYNGVQGFAPRQVCCSIHITFELVI 301
           L ++S+Y +A         T   I   + +GC + F+ G+ GF P      + +      
Sbjct: 591 LPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFV------ 650

Query: 302 FLFELGIEPGSDPSSTYHIGQVIKCRITSSSPSSKRISLSFVMKPARVSEDAK-----VE 361
                       P     +GQ +  ++       +RI  +  +   + ++        V 
Sbjct: 651 ----------KRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKDTIENIVP 710

Query: 362 LGCIVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSD---HQAHAALMKSVLKPGYQFE 410
              I++  V E T+  V + I   G  RG I   HLSD    Q  A L K  L+ G +  
Sbjct: 711 GRTIITVHVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQLKK--LRIGTELT 755

[Close]

BLAST of Spg002238 vs. ExPASy TrEMBL
Match: A0A5D3BW30 (rRNA biogenesis protein RRP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00280 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.9e-128
Identity = 236/264 (89.39%), Postives = 246/264 (93.18%), Query Frame = 0


Query: 147 ASAFEGPVFSYTDVKPGTLIRAKVIIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKK 206
           ASAFEGPVFSY+DVKPGTLIRAKVI+VDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKK
Sbjct: 392 ASAFEGPVFSYSDVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKK 451

Query: 207 FKVGAELIFRVLGCKSKRITVTHKKALVKSKLEVLSSYADATAGLVTHGWITKIERHGCF 266
           FKVGAELIFRVLGCKSKRITVTHKK LVKSKLEVLSSYADATAGLVTHGWITKIE+HGCF
Sbjct: 452 FKVGAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIEKHGCF 511

Query: 267 VRFYNGVQGFAPRQVCCSIHITFELVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPS 326
           VRFYNGVQGFAPR                FELGIEPGSDPSSTYHIGQVIKCRITSS+PS
Sbjct: 512 VRFYNGVQGFAPR----------------FELGIEPGSDPSSTYHIGQVIKCRITSSTPS 571

Query: 327 SKRISLSFVMKPARVSEDAKVELGCIVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSD 386
           SKRISLSFVMKPARVSED KV+LGCIV+GVVDEIT+THVTLYINRTGYSRGRISTEHLSD
Sbjct: 572 SKRISLSFVMKPARVSEDTKVDLGCIVTGVVDEITETHVTLYINRTGYSRGRISTEHLSD 631

Query: 387 HQAHAALMKSVLKPGYQFEQLLVL 411
           HQAHA+LMK+VLKPGYQF+QLLVL
Sbjct: 632 HQAHASLMKAVLKPGYQFDQLLVL 639

[Close]

BLAST of Spg002238 vs. ExPASy TrEMBL
Match: A0A1S3B5U4 (LOW QUALITY PROTEIN: rRNA biogenesis protein RRP5 OS=Cucumis melo OX=3656 GN=LOC103486130 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.9e-128
Identity = 236/264 (89.39%), Postives = 246/264 (93.18%), Query Frame = 0


Query: 147 ASAFEGPVFSYTDVKPGTLIRAKVIIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKK 206
           ASAFEGPVFSY+DVKPGTLIRAKVI+VDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKK
Sbjct: 472 ASAFEGPVFSYSDVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKK 531

Query: 207 FKVGAELIFRVLGCKSKRITVTHKKALVKSKLEVLSSYADATAGLVTHGWITKIERHGCF 266
           FKVGAELIFRVLGCKSKRITVTHKK LVKSKLEVLSSYADATAGLVTHGWITKIE+HGCF
Sbjct: 532 FKVGAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIEKHGCF 591

Query: 267 VRFYNGVQGFAPRQVCCSIHITFELVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPS 326
           VRFYNGVQGFAPR                FELGIEPGSDPSSTYHIGQVIKCRITSS+PS
Sbjct: 592 VRFYNGVQGFAPR----------------FELGIEPGSDPSSTYHIGQVIKCRITSSTPS 651

Query: 327 SKRISLSFVMKPARVSEDAKVELGCIVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSD 386
           SKRISLSFVMKPARVSED KV+LGCIV+GVVDEIT+THVTLYINRTGYSRGRISTEHLSD
Sbjct: 652 SKRISLSFVMKPARVSEDTKVDLGCIVTGVVDEITETHVTLYINRTGYSRGRISTEHLSD 711

Query: 387 HQAHAALMKSVLKPGYQFEQLLVL 411
           HQAHA+LMK+VLKPGYQF+QLLVL
Sbjct: 712 HQAHASLMKAVLKPGYQFDQLLVL 719

[Close]

BLAST of Spg002238 vs. ExPASy TrEMBL
Match: A0A6J1EE30 (rRNA biogenesis protein RRP5 OS=Cucurbita moschata OX=3662 GN=LOC111432393 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 9.3e-128
Identity = 247/300 (82.33%), Postives = 259/300 (86.33%), Query Frame = 0


Query: 120 KDELVKREKKVKEEI-----ISFFSTLYGLEL----ASAFEGPVFSYTDVKPGTLIRAKV 179
           +D + K  KK KE       I  F  L GL +    ASAFEGPVFSY+DVKPGTLIRAKV
Sbjct: 447 EDAVKKTGKKFKEGSHVRVRILGFRHLEGLAIGTLKASAFEGPVFSYSDVKPGTLIRAKV 506

Query: 180 IIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK 239
           I+VD+FGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK
Sbjct: 507 IVVDNFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK 566

Query: 240 KALVKSKLEVLSSYADATAGLVTHGWITKIERHGCFVRFYNGVQGFAPRQVCCSIHITFE 299
           KALVKSKLEVLSSYADATAGLVTHGWITKIE+HGCFV+FYNGVQGFAPR           
Sbjct: 567 KALVKSKLEVLSSYADATAGLVTHGWITKIEKHGCFVKFYNGVQGFAPR----------- 626

Query: 300 LVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPSSKRISLSFVMKPARVSEDAKVELG 359
                FELGIEPGSDPSSTYHIGQVIKCRITSS+PSSKRISLSFVMKPARVSEDAKVELG
Sbjct: 627 -----FELGIEPGSDPSSTYHIGQVIKCRITSSTPSSKRISLSFVMKPARVSEDAKVELG 686

Query: 360 CIVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSDHQAHAALMKSVLKPGYQFEQLLVL 411
           CIVSGVVDEIT+THVTLYINR+ YSRGRIS EHLSDHQ HAALMKSVLKPGYQF+QLLVL
Sbjct: 687 CIVSGVVDEITETHVTLYINRSSYSRGRISVEHLSDHQGHAALMKSVLKPGYQFDQLLVL 730

[Close]

BLAST of Spg002238 vs. ExPASy TrEMBL
Match: A0A6J1HM63 (rRNA biogenesis protein RRP5 OS=Cucurbita maxima OX=3661 GN=LOC111465903 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 7.9e-127
Identity = 246/300 (82.00%), Postives = 258/300 (86.00%), Query Frame = 0


Query: 120 KDELVKREKKVKEEI-----ISFFSTLYGLEL----ASAFEGPVFSYTDVKPGTLIRAKV 179
           +D + K  KK KE       I  F  L GL +    ASAF GPVFSY+DVKPGTLIRAKV
Sbjct: 447 EDAVKKTGKKFKEGSHVRVRILGFRHLEGLAIGTLKASAFLGPVFSYSDVKPGTLIRAKV 506

Query: 180 IIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK 239
           I+VD+FGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK
Sbjct: 507 IVVDNFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK 566

Query: 240 KALVKSKLEVLSSYADATAGLVTHGWITKIERHGCFVRFYNGVQGFAPRQVCCSIHITFE 299
           KALVKSKLEVLSSYADATAGLVTHGWITKIE+HGCFV+FYNGVQGFAPR           
Sbjct: 567 KALVKSKLEVLSSYADATAGLVTHGWITKIEKHGCFVKFYNGVQGFAPR----------- 626

Query: 300 LVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPSSKRISLSFVMKPARVSEDAKVELG 359
                FELGIEPGSDPSSTYHIGQVIKCRITSS+PSSKRISLSFVMKPARVSEDAKVELG
Sbjct: 627 -----FELGIEPGSDPSSTYHIGQVIKCRITSSTPSSKRISLSFVMKPARVSEDAKVELG 686

Query: 360 CIVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSDHQAHAALMKSVLKPGYQFEQLLVL 411
           CIVSGVVDEIT+THVTLYINR+ YSRGRIS EHLSDHQ HAALMKSVLKPGYQF+QLLVL
Sbjct: 687 CIVSGVVDEITETHVTLYINRSSYSRGRISVEHLSDHQGHAALMKSVLKPGYQFDQLLVL 730

[Close]

BLAST of Spg002238 vs. ExPASy TrEMBL
Match: A0A0A0L3Z5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G553660 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 3.9e-126
Identity = 246/300 (82.00%), Postives = 259/300 (86.33%), Query Frame = 0


Query: 121 DELVKR-EKKVKEEI-----ISFFSTLYGLEL----ASAFEGPVFSYTDVKPGTLIRAKV 180
           +E+VK+  KK KE       I  F  L GL +    ASAFEGPVFSY+DVKPGTLIRAKV
Sbjct: 437 EEVVKKIGKKFKEGSRVRVRILGFRHLEGLAIGTLKASAFEGPVFSYSDVKPGTLIRAKV 496

Query: 181 IIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK 240
           I+VDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK
Sbjct: 497 IVVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVLGCKSKRITVTHK 556

Query: 241 KALVKSKLEVLSSYADATAGLVTHGWITKIERHGCFVRFYNGVQGFAPRQVCCSIHITFE 300
           K LVKSKLEVLSSYADATAGLVTHGWITKIE+HGCFVRFYNGVQGFAPR           
Sbjct: 557 KTLVKSKLEVLSSYADATAGLVTHGWITKIEKHGCFVRFYNGVQGFAPR----------- 616

Query: 301 LVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPSSKRISLSFVMKPARVSEDAKVELG 360
                FELGIEPGSDPSSTYHIGQVIKCRITSS+ SSKRISLSFVMKPARVSED KVELG
Sbjct: 617 -----FELGIEPGSDPSSTYHIGQVIKCRITSSTHSSKRISLSFVMKPARVSEDTKVELG 676

Query: 361 CIVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSDHQAHAALMKSVLKPGYQFEQLLVL 411
           CIV+GVVDEIT+THVTLYINRT YSRGRISTEHLSDHQAHA+ +KSVLKPGYQF+QLLVL
Sbjct: 677 CIVTGVVDEITETHVTLYINRTDYSRGRISTEHLSDHQAHASSIKSVLKPGYQFDQLLVL 720

[Close]

BLAST of Spg002238 vs. TAIR 10
Match: AT3G11964.1 (RNA binding;RNA binding )

HSP 1 Score: 323.9 bits (829), Expect = 1.9e-88
Identity = 163/278 (58.63%), Postives = 201/278 (72.30%), Query Frame = 0


Query: 148 SAFEGPVFSYTDVKPGTLIRAKVIIVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKF 207
           SAFEGPVF+++DVKPG + +AKVI VD FGAIVQF GGLKA+CPL HMSEFE+ KPRKKF
Sbjct: 460 SAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKF 519

Query: 208 KVGAELIFRVLGCKSKRITVTHKKALVKSKLEVLSSYADATAGLVTHGWITKIERHGCFV 267
           KVGAEL+FRVLGCKSKRITVT+KK LVKSKL +LSSY DAT GLVTHGWITKIE+HGCFV
Sbjct: 520 KVGAELVFRVLGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFV 579

Query: 268 RFYNGVQGFAPRQVCCSIHITFELVIFLFELGIEPGSDPSSTYHIGQVIKCRITSSSPSS 327
           RFYNGVQGF PR                FELG+EPGSDP S +H+G+V+KCR+TS+   +
Sbjct: 580 RFYNGVQGFVPR----------------FELGLEPGSDPDSVFHVGEVVKCRVTSAVHGT 639

Query: 328 KRISLSFVMKPARVSEDAKVELGCIVSGVVDEITQTHVTLYINRTGYSRGRISTEHLSDH 387
           +RI+L           +  ++LG IVSG++D IT   V + +      +G IS EHL+DH
Sbjct: 640 QRITL-----------NDSIKLGSIVSGIIDTITSQAVIVRVKSKSVVKGTISAEHLADH 699

Query: 388 QAHAALMKSVLKPGYQFEQLLVL----GNFIFSNSFQL 422
              A L+ S+L+PGY+ ++LLVL     N   S+ + L
Sbjct: 700 HEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSL 710

The following BLAST results are available for this feature:

BLAST of Spg002238 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442208.1	3.9e-128	89.39	PREDICTED: LOW QUALITY PROTEIN: rRNA biogenesis protein RRP5 [Cucumis melo]	[more]
TYK02426.1	3.9e-128	89.39	rRNA biogenesis protein RRP5 [Cucumis melo var. makuwa]	[more]
XP_022925023.1	1.9e-127	82.33	rRNA biogenesis protein RRP5 [Cucurbita moschata]	[more]
KAG6595619.1	1.9e-127	82.33	rRNA biogenesis protein RRP5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023517465.1	1.9e-127	82.33	rRNA biogenesis protein RRP5 isoform X1 [Cucurbita pepo subsp. pepo] >XP_0235174...	[more]

BLAST of Spg002238 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4J8K6	3.4e-95	57.64	rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana OX=3702 GN=RRP5 PE=2 SV=2	[more]
Q14690	1.6e-31	31.27	Protein RRP5 homolog OS=Homo sapiens OX=9606 GN=PDCD11 PE=1 SV=3	[more]
Q6NS46	6.0e-31	32.01	Protein RRP5 homolog OS=Mus musculus OX=10090 GN=Pdcd11 PE=1 SV=2	[more]
A7MB10	7.8e-31	33.23	Protein RRP5 homolog OS=Bos taurus OX=9913 GN=PDCD11 PE=2 SV=1	[more]
Q05022	1.0e-06	25.00	rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]

BLAST of Spg002238 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BW30	1.9e-128	89.39	rRNA biogenesis protein RRP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3B5U4	1.9e-128	89.39	LOW QUALITY PROTEIN: rRNA biogenesis protein RRP5 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1EE30	9.3e-128	82.33	rRNA biogenesis protein RRP5 OS=Cucurbita moschata OX=3662 GN=LOC111432393 PE=4 ...	[more]
A0A6J1HM63	7.9e-127	82.00	rRNA biogenesis protein RRP5 OS=Cucurbita maxima OX=3661 GN=LOC111465903 PE=4 SV...	[more]
A0A0A0L3Z5	3.9e-126	82.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G553660 PE=4 SV=1	[more]

BLAST of Spg002238 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11964.1	1.9e-88	58.63	RNA binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 113..133
None	No IPR available	GENE3D	2.40.50.140		coord: 245..335 e-value: 1.6E-14 score: 55.7
None	No IPR available	GENE3D	2.40.50.140		coord: 147..233 e-value: 7.2E-15 score: 56.6
None	No IPR available	PANTHER	PTHR23270:SF12	BNAANNG09370D PROTEIN	coord: 153..410
None	No IPR available	PANTHER	PTHR23270	PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5	coord: 153..410
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 161..230 e-value: 4.6E-15 score: 66.0 coord: 248..335 e-value: 4.5E-8 score: 42.8
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 161..224 e-value: 7.3E-8 score: 32.6 coord: 250..333 e-value: 2.4E-4 score: 21.4
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 163..230 score: 14.126505
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 250..335 score: 11.404175
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 145..244
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 240..334

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002238.1	Spg002238.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009553	embryo sac development
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding