Spg002165 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg002165
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold1: 30711870 .. 30714348 (+)
RNA-Seq ExpressionSpg002165
SyntenySpg002165
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACCCTGTCACCCAAATCGGGCACCAGAGGACCCGTTAGAGTCCCAGTTCCTTCGTGACTTCAAGTGTTACGACCCTCCCTCTTTTGATGGGCGATCTGAGAACCCGTTGGCAGCCGAGCGCTGGATAGGCAACCTCGAAGCTATGTATGATTACATGAATTGTGATGATCATTTGAAAGTTTGAGGTGCAGTTTTCATGCTTAGGGATGAAGCCTGCAATTGGTGGAAATCAATATCAGCCGCTGAGGATCACGCTAACGTACCGATTTCGTGGGAGAGGTTTAAAGATCTCCTCTTTGACTACTACTTCCCTGGACAGTCAAAGATGACAAGGAGACTGAGTTTTTGCATTTAACTCAGGGGACCATATCTGTGATCCAGTACGAGCGGAAATCACTGAGCTCGCGCGTCTCTGCTGTCGATCGCTCTCCCTCTCTTCGCGCGAGTTCCTTCCTTTCTGTCGGTGTGTGGCCGTGAGAACCCATCCTCACCGCAGCCATCAGAGTGCGCCGCCGCCGCCCGAGATCTCCCTCTCCCTCGAGCGTCCCCTCTCGGTTCAGGTGTGTTTCAAGATTCGGATCTCTCTGTCTCCGCGTTCTTCAGCCTTAAAATCGTGGGTAAGCTCTTGTTCCTATCATTCTTAGATGAGATAAGACCGATCTAACTCCCTTCGCTCTTTTTCAGTCGAATTCGTGCGCGTCCAACAACCTGAACCTCAGTTTCTCGCGTTTTCGTCTCTGTCCAGCGAGTATTTTGGCCTCGGATCCCTTCATCCGGTAAGCTTATGCCTTACCCATTGTCAATGGGTGCCTAGATTTAAATACCCATTGCCTTAGGTGCTGGAATCTTATTGTTAGCGATGTTTTTCTATTCTGCAGCGCTGCCTAAGTGTTTGATTGGGTTCGATACACTTCAAACTCGAGTACCCACTGCCCAAGGAGCGTTCTAACACGCTGTTCGAGGTTAGACTAACCCGTCTAGCGTGGAAACGGGTCCGTTTGGTAAGTTTCTTCGCCGCCCCTAGCTTGTTAGTCTCAAGTTAATTGGCTATTAGATGATCTAGCTTTAGAAAAGCATGCTTAAATCAAGCCCATTAATTGTTTAGGCCTTGTTAGCATTCCCCGACCTCCTTGGAGTCCTTAGAATGAAAATAAAAGGGTTTTGCTTGCTGGTCGTGGTTTAAAAAGCGTGCTAAGTTATCACCTATCAATTGTCTAGACTCGAGTAGCGTTGCCCAATCTCTAGGAGCCCTTAGAATCCCTAAATGTACCTTTGTACTTGCTGTCCAGCGGCTGAAAAGCCTTAGTAAAGGTCGTTCAGCATATGCCCATGGCCCGTAGTGCCTTAGACATGGTTGCCCATGGTCTAAAGCTTTTGGGTTTTCATTTTGGGGAATGTTTGAAGACTGTTTAACAAGGAAATAGGCCTAGTAAGTGGGATTTGGCTTTTCAAGCTTATCTTAAGGTCTTTAGGTAAATTCTAACCCCTTTTAGCTGCCTTTGTAATTTAGGAGCTCATCTTGGCTGCTTTAGGCTTGTTGAGGTTGCCTTGGAAGCGCTATAGGTAAGTAGTTTCTACTTACTGAGCTTGTTTGATTGCCTGAAGTATGTTTGTTTGTTATCCGCTTTACTTATATATGTGCTAAGTATGAATTGCTATGTATACACTGTTGTATTGTGAACATTGAAATGGTTGTGTTAATCTTGAATTGTGTTTATTGCATTGCTTGAGACGTGTACGCTTAAGAAGTATAAGCATGATAGGTACTTGTCTTAGGCTTAGTGACTGTGGAGTCGAGCATGATGAGTCCGATTGGCATGTTGCATGGGGGATGTGTAGCATGAGTCGGGTGTGAGACACAACACATGGTGCGTAATTCATGTGTAGTGGAGCGTGACGCAGAAATCACGTGGGTGTGAGTGCGGAGCGTGACGCGGAAATCACGTGGGTGTGAGTGCGGAGCGTGATGCGGAAATCACGTAAGAGTGGCGCAACACATGGCGCGGAATTCATGTGGGGTAGGTGCGGAGCATGACGCGGAAATCATGTAAGTAGCGCAGCACATGGCGCGGAATTCATGTGTAGCGGAGCATGACGCGGAAATCATGTAGTTAGTGGAGCATGACGCGGAAATCATGTAGTTGCGGAGCATGACACGGAAATCATGTGGAGTCTAATGCGTGCGTGCATAGCGTGTGGTGCATTTGCATGAGTTTGATGTTTTTAAGCATGTGGTTAGTTTTTAGCTTGAAAACATGTTTCTTATTGTGGTTGTGTAACCTGTTGGATGCGTGTGCTGAGCATGTTGCGTGTATTGGTCGTTTGTTTGTGGTTTGGTAAGTGTGAGCTGCTTACCAGTACCACGGTTGTACTGATACCCTCTTCCCCATCTTCCCCCCAACATTTTAGATGTTGTAGGTTTGGATGACGAGCTGGATCCTGGTGAGGAAGAGGAGCACTACGAGGAGGAACCTTAG

mRNA sequence

CAACCCTGTCACCCAAATCGGGCACCAGAGGACCCGTTAGAGTCCCAGTTCCTTCGTGACTTCAAGTGTTACGACCCTCCCTCTTTTGATGGGCGATCTGAGAACCCGTTGGCAGCCGAGCGCTGGATAGGCAACCTCGAAGCTATGGATGAAGCCTGCAATTGGTGGAAATCAATATCAGCCGCTGAGGATCACGCTAACGTACCGATTTCGTGGGAGAGGTTTAAAGATCTCCTCTTTGACTACTACTTCCCTGGACAGTCAAAGATGACAAGGAGACTGATCGAATTCGTGCGCGTCCAACAACCTGAACCTCAGTTTCTCGCGTTTTCGTCTCTGTCCAGCGAGTATTTTGGCCTCGGATCCCTTCATCCGGAGCTCATCTTGGCTGCTTTAGGCTTGTTGAGGTTGCCTTGGAAGCGCTATAGACGTGTACGCTTAAGAAGTATAAGCATGATAGGTACTTGTCTTAGGCTTAGTGACTGTGGAGTCGAGCATGATGAGTCCGATTGGCATGTGCGGAGCATGACGCGGAAATCATTTGCGGAGCATGACACGGAAATCATGTGGAGTCTAATGCGTGCGTGCATAGCGTGTGGTTTGGATGACGAGCTGGATCCTGGTGAGGAAGAGGAGCACTACGAGGAGGAACCTTAG

Coding sequence (CDS)

CAACCCTGTCACCCAAATCGGGCACCAGAGGACCCGTTAGAGTCCCAGTTCCTTCGTGACTTCAAGTGTTACGACCCTCCCTCTTTTGATGGGCGATCTGAGAACCCGTTGGCAGCCGAGCGCTGGATAGGCAACCTCGAAGCTATGGATGAAGCCTGCAATTGGTGGAAATCAATATCAGCCGCTGAGGATCACGCTAACGTACCGATTTCGTGGGAGAGGTTTAAAGATCTCCTCTTTGACTACTACTTCCCTGGACAGTCAAAGATGACAAGGAGACTGATCGAATTCGTGCGCGTCCAACAACCTGAACCTCAGTTTCTCGCGTTTTCGTCTCTGTCCAGCGAGTATTTTGGCCTCGGATCCCTTCATCCGGAGCTCATCTTGGCTGCTTTAGGCTTGTTGAGGTTGCCTTGGAAGCGCTATAGACGTGTACGCTTAAGAAGTATAAGCATGATAGGTACTTGTCTTAGGCTTAGTGACTGTGGAGTCGAGCATGATGAGTCCGATTGGCATGTGCGGAGCATGACGCGGAAATCATTTGCGGAGCATGACACGGAAATCATGTGGAGTCTAATGCGTGCGTGCATAGCGTGTGGTTTGGATGACGAGCTGGATCCTGGTGAGGAAGAGGAGCACTACGAGGAGGAACCTTAG

Protein sequence

QPCHPNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAMDEACNWWKSISAAEDHANVPISWERFKDLLFDYYFPGQSKMTRRLIEFVRVQQPEPQFLAFSSLSSEYFGLGSLHPELILAALGLLRLPWKRYRRVRLRSISMIGTCLRLSDCGVEHDESDWHVRSMTRKSFAEHDTEIMWSLMRACIACGLDDELDPGEEEEHYEEEP
Homology
[Close]
BLAST of Spg002165 vs. NCBI nr
Match: XP_022156328.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 3.3e-22
Identity = 61/140 (43.57%), Postives = 81/140 (57.86%), Query Frame = 0 

Query: 5   PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------- 64
           P RA     E QF+RDFKC+ PP F+G SE P AAE W+  LEA+               
Sbjct: 79  PRRAQIPQDEVQFIRDFKCFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGA 138

Query: 65  -----DEACNWWKSISAAEDHANVPISWERFKDLLFDYYFPGQSKMTRRLIEFVR----- 118
                 EA NWW+S++AAEDHANVP++W RFKDLL++YYFP  ++  +R +EF+R     
Sbjct: 139 VFMLRGEAVNWWESVAAAEDHANVPVTWARFKDLLYEYYFPVIARNEKR-VEFLRLTQGS 198

[Close]
BLAST of Spg002165 vs. NCBI nr
Match: XP_022158645.1 (uncharacterized protein LOC111025102 [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-20
Identity = 60/140 (42.86%), Postives = 77/140 (55.00%), Query Frame = 0 

Query: 5   PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------- 64
           P RA     E QF+RDFK + PP F+G SE P AAE W+  LEA+               
Sbjct: 30  PRRAQIQQEEVQFIRDFKRFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDEFKVRGA 89

Query: 65  -----DEACNWWKSISAAEDHANVPISWERFKDLLFDYYFPGQSKMTRRLIEFVR----- 118
                 EA NWW+S++AAEDHANVP++W RFKDLL++YYFP   +  +R  EF+R     
Sbjct: 90  VFMLWGEAVNWWESVAAAEDHANVPVTWARFKDLLYEYYFPVTVRNEKR-AEFLRLTQGS 149

[Close]
BLAST of Spg002165 vs. NCBI nr
Match: XP_022155925.1 (uncharacterized protein LOC111022925 [Momordica charantia])

HSP 1 Score: 109.0 bits (271), Expect = 5.2e-20
Identity = 68/185 (36.76%), Postives = 91/185 (49.19%), Query Frame = 0 

Query: 5   PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------- 64
           P+R      E QF+RDFK + PP F+G SE P AAE W+  LEA+               
Sbjct: 60  PSRGQISQEEVQFIRDFKRFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGA 119

Query: 65  -----DEACNWWKSISAAEDHANVPISWERFKDLLFDYYFPGQSKMTRRLIEFVR----- 124
                 EA NWW+S++AAEDHANVP++W RFKDLL++YYFP   +  +R  EF+R     
Sbjct: 120 VFMLQGEAVNWWESVAAAEDHANVPVTWARFKDLLYEYYFPVTVRNEKR-AEFLRLTQES 179

Query: 125 --VQQPEPQFLAFSSLSSEYFGLGSLHPELILAAL-----GLLRLPWKRYRRVRLRSISM 158
             V Q E +F   S    +Y     L  +  +  L     GLL L         +R   +
Sbjct: 180 LIVAQYERKFTELSRFGMQYIPTEQLKIDKFIDGLRREIKGLLVLKEPTTYAAAVRCALV 239

[Close]
BLAST of Spg002165 vs. NCBI nr
Match: XP_022155341.1 (uncharacterized protein LOC111022474 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 8.9e-20
Identity = 59/140 (42.14%), Postives = 76/140 (54.29%), Query Frame = 0 

Query: 5   PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------- 64
           P RA     E QF+RDFK + PP F+G SE P A E W+  LEA+               
Sbjct: 79  PRRAQIQQEEVQFIRDFKRFGPPVFNGVSERPTATEEWVRELEALYVYLGCSDEFKVRGA 138

Query: 65  -----DEACNWWKSISAAEDHANVPISWERFKDLLFDYYFPGQSKMTRRLIEFVR----- 118
                 EA NWW+S++AAEDHANVP++W RFKDLL++YYFP   +  +R  EF+R     
Sbjct: 139 MFMLRGEAVNWWESVAAAEDHANVPVTWARFKDLLYEYYFPVTVRNEKR-AEFLRLTQGS 198

[Close]
BLAST of Spg002165 vs. NCBI nr
Match: XP_022158637.1 (uncharacterized protein LOC111025088 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 4.4e-19
Identity = 56/120 (46.67%), Postives = 69/120 (57.50%), Query Frame = 0 

Query: 4   HPNRAPEDP-LESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM------------- 63
           HP R    P  E+QF++DFK Y PP+FDG SE   AAE W+  LEA+             
Sbjct: 38  HPPRHFHTPQSEAQFIKDFKRYGPPTFDGGSERATAAEWWVRELEALYAYLGCEDQFKVK 97

Query: 64  -------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYFPGQSKMTRRLIEFVRVQQ 103
                   EA NWW SI+ AEDHANVP+ W RFKDLL+DYY+P   K T+   EF+ + Q
Sbjct: 98  GVVFMLRGEALNWWDSIAVAEDHANVPVPWARFKDLLYDYYYPETVKDTKE-AEFLHLAQ 156

[Close]
BLAST of Spg002165 vs. ExPASy TrEMBL
Match: A0A6J1DQB9 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 61/140 (43.57%), Postives = 81/140 (57.86%), Query Frame = 0 

Query: 5   PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------- 64
           P RA     E QF+RDFKC+ PP F+G SE P AAE W+  LEA+               
Sbjct: 79  PRRAQIPQDEVQFIRDFKCFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGA 138

Query: 65  -----DEACNWWKSISAAEDHANVPISWERFKDLLFDYYFPGQSKMTRRLIEFVR----- 118
                 EA NWW+S++AAEDHANVP++W RFKDLL++YYFP  ++  +R +EF+R     
Sbjct: 139 VFMLRGEAVNWWESVAAAEDHANVPVTWARFKDLLYEYYFPVIARNEKR-VEFLRLTQGS 198

[Close]
BLAST of Spg002165 vs. ExPASy TrEMBL
Match: A0A6J1DWE6 (uncharacterized protein LOC111025102 OS=Momordica charantia OX=3673 GN=LOC111025102 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 60/140 (42.86%), Postives = 77/140 (55.00%), Query Frame = 0 

Query: 5   PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------- 64
           P RA     E QF+RDFK + PP F+G SE P AAE W+  LEA+               
Sbjct: 30  PRRAQIQQEEVQFIRDFKRFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDEFKVRGA 89

Query: 65  -----DEACNWWKSISAAEDHANVPISWERFKDLLFDYYFPGQSKMTRRLIEFVR----- 118
                 EA NWW+S++AAEDHANVP++W RFKDLL++YYFP   +  +R  EF+R     
Sbjct: 90  VFMLWGEAVNWWESVAAAEDHANVPVTWARFKDLLYEYYFPVTVRNEKR-AEFLRLTQGS 149

[Close]
BLAST of Spg002165 vs. ExPASy TrEMBL
Match: A0A6J1DNV8 (uncharacterized protein LOC111022925 OS=Momordica charantia OX=3673 GN=LOC111022925 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-20
Identity = 68/185 (36.76%), Postives = 91/185 (49.19%), Query Frame = 0 

Query: 5   PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------- 64
           P+R      E QF+RDFK + PP F+G SE P AAE W+  LEA+               
Sbjct: 60  PSRGQISQEEVQFIRDFKRFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGA 119

Query: 65  -----DEACNWWKSISAAEDHANVPISWERFKDLLFDYYFPGQSKMTRRLIEFVR----- 124
                 EA NWW+S++AAEDHANVP++W RFKDLL++YYFP   +  +R  EF+R     
Sbjct: 120 VFMLQGEAVNWWESVAAAEDHANVPVTWARFKDLLYEYYFPVTVRNEKR-AEFLRLTQES 179

Query: 125 --VQQPEPQFLAFSSLSSEYFGLGSLHPELILAAL-----GLLRLPWKRYRRVRLRSISM 158
             V Q E +F   S    +Y     L  +  +  L     GLL L         +R   +
Sbjct: 180 LIVAQYERKFTELSRFGMQYIPTEQLKIDKFIDGLRREIKGLLVLKEPTTYAAAVRCALV 239

[Close]
BLAST of Spg002165 vs. ExPASy TrEMBL
Match: A0A6J1DRF5 (uncharacterized protein LOC111022474 OS=Momordica charantia OX=3673 GN=LOC111022474 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.3e-20
Identity = 59/140 (42.14%), Postives = 76/140 (54.29%), Query Frame = 0 

Query: 5   PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------- 64
           P RA     E QF+RDFK + PP F+G SE P A E W+  LEA+               
Sbjct: 79  PRRAQIQQEEVQFIRDFKRFGPPVFNGVSERPTATEEWVRELEALYVYLGCSDEFKVRGA 138

Query: 65  -----DEACNWWKSISAAEDHANVPISWERFKDLLFDYYFPGQSKMTRRLIEFVR----- 118
                 EA NWW+S++AAEDHANVP++W RFKDLL++YYFP   +  +R  EF+R     
Sbjct: 139 MFMLRGEAVNWWESVAAAEDHANVPVTWARFKDLLYEYYFPVTVRNEKR-AEFLRLTQGS 198

[Close]
BLAST of Spg002165 vs. ExPASy TrEMBL
Match: A0A6J1DXQ7 (uncharacterized protein LOC111025088 OS=Momordica charantia OX=3673 GN=LOC111025088 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-19
Identity = 56/120 (46.67%), Postives = 69/120 (57.50%), Query Frame = 0 

Query: 4   HPNRAPEDP-LESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM------------- 63
           HP R    P  E+QF++DFK Y PP+FDG SE   AAE W+  LEA+             
Sbjct: 38  HPPRHFHTPQSEAQFIKDFKRYGPPTFDGGSERATAAEWWVRELEALYAYLGCEDQFKVK 97

Query: 64  -------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYFPGQSKMTRRLIEFVRVQQ 103
                   EA NWW SI+ AEDHANVP+ W RFKDLL+DYY+P   K T+   EF+ + Q
Sbjct: 98  GVVFMLRGEALNWWDSIAVAEDHANVPVPWARFKDLLYDYYYPETVKDTKE-AEFLHLAQ 156

The following BLAST results are available for this feature:
BLAST of Spg002165 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156328.13.3e-2243.57LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia][more]
XP_022158645.12.3e-2042.86uncharacterized protein LOC111025102 [Momordica charantia][more]
XP_022155925.15.2e-2036.76uncharacterized protein LOC111022925 [Momordica charantia][more]
XP_022155341.18.9e-2042.14uncharacterized protein LOC111022474 [Momordica charantia][more]
XP_022158637.14.4e-1946.67uncharacterized protein LOC111025088 [Momordica charantia][more]
BLAST of Spg002165 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg002165 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DQB91.6e-2243.57Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1[more]
A0A6J1DWE61.1e-2042.86uncharacterized protein LOC111025102 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DNV82.5e-2036.76uncharacterized protein LOC111022925 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DRF54.3e-2042.14uncharacterized protein LOC111022474 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DXQ72.1e-1946.67uncharacterized protein LOC111025088 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
BLAST of Spg002165 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg002165.1Spg002165.1mRNA