Spg002112 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002112
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein FAR1-RELATED SEQUENCE 4-like
Location	scaffold2: 27484940 .. 27487352 (-)
RNA-Seq Expression	Spg002112
Synteny	Spg002112

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGTGTGTGGGTTTGTTATGGTGGTCTGTGGAATGAGAGGGAAAATGAATATGAGGGTGGAGAGTTGACGGGTTTCGACATAGACATTGGTACTGCATACAGTGACTTCTTAAGTCGATTATATAGATTAACCAGTATAAGTTCAGAGGAATTTGACCTTATAATAAGATGTGTAGTCCAGTTGGTGTCTAGGGCCCCTGCGTTTGTTATTAGGAACGATGAAAACCCTAACACCTTCTTGACGTGGATTAAGGTCTCTGATGTACCCATATACATATCCACAATCCCAAAGTGTCCTAGTAACCAAGCCTCACGACCATTTCCCATCCCATGCATGCACCATGCCAAATAAGGTGGAGCCGAATTTATCATCGACATCGGTCCCAAACAATATACCATCGGCATCTACATCCTTCCCATGCGATGAATCCAAAAATATTCCTGTGTATAACTTGGGGGATGATGAAGACCATGGTAGTGAACTTTATGGTGGCCAAGATTGGGGGGAATACGAAGATTATGAGGAGTACGGAGATGATGAGGACATAGACACAGAGGTTGATGTAGCTGTGGGAGACGACGATGAGGAAGAGATTCACAAACAGTACACTGAGGTTCCTTCTGTGCCTGAACAGGTGGCGACATGCTCTTCCGTTCCGAATACTTCATCCAAGGCAATCATCATGACAAGTCAGTCTTCATCTTCTGAAGATGTAGAAGTTGGAGAAGTATTCATGTGTAAAAGAGACTTGTACATGAGGATGTATGTGATTGCAATGAGAAGAAACTTTCAGTTTAGGGTAAAAAAATCAAAGAAGAACATATGAGTAGCTGAGTGTGTAATTGAAGAATGCAAATGGAGGGTTCGAGCTATGACTGTTACTAAAGGGTGTGAAATATTTAAGATCACGAAGTACTGTAATATCCATACTTGTGTACGTGAAATGTTAACCCATGATCATAGGCAGGCCATGAGTTGGGTTATTGGAAATTTGATCAAGTCGAGGTTCCAAGACGTCGGTCGTACTTATAGGCCAAAGGATATTGTGAACGATATTAGACAAGATTTTGGTGTGAATTTAAGCTACGACAAGGCTTGGCGGGCTAGAGAAGAAGCTTTTATTCTTGCTAGAGGATCTCCCGAAGAATCTTACAAATTGTTACCAAGATTTGGTGAAGCATTGAAAATCGAAAATCCCGGTACAGTGTTCGAATTAGAACTTGAAGACGATGGACATTTAAAGCATGTGTTTATGGCACTAGGTGCTTCTATTGGAGGATTCAAGAGCTCTATTCGTCCAGTTCTAGTGGTTGATGGAATACACCTACGGGGAAAATTCTGTGGGAAGCTCCTTCTTGCAACCGGTGTAGATGGTAACAACCAGTTATATCCTGTAGGGTGGGCCTTGGCCGGGGGAGAAACTGATCAGTCATGGACGTACTTTTTTCGACAGGTGGAACGTGCAGTTGGACAAGTTCCTAGTCTGGTCATTGTGTCTGACAGACATGCTAGCATTGGTAAGACAGTCAAAACTGTATTTCCTAATGCATTTCACTGCGTGTGTATCCGACGCTTAGGGGAGAACCTGAAGACGCATTTTAAGACCGGGAACTTCATGAAACTATTTGACGGAGCTGCAAGGGCATTTCGCGTGGTTGAATTCAATGAGTACTGGCAGCAACTCCCAGAAAACGTCAGGACATACCTACAAGGGGTCGGAGTTGAGAGGTGGGCTCGAGCATACCAGTGTGGTCGTCGGTATAACCAAATGACCACCAATCTTGCAGAGTGCACTAACTCAGTGTTGAAAGATGCACGAGAGCTCCCAATCACCGCATTAATGAATCATATCAGAGGGTGGCTCCAAGCAAAATACTACAAACGCAGGAATAAGCACTCCAGTAACCCGAGCCAGTGGTCGAAGTTTGCAACAGAAATGTTGGAAAAAGCAGAGGAGAAGTCACAGAGGCACGTGGTCAAACCTATTGCTCGATAGGAGTTTGATTTCGAGGACGGACATTTGGGTGGACGTGTCAACCTTCACACTAGAACATGCACCTGTCGTGAATTTGAGTATTACGAACTTCCATGCTCTCATGCGATCGCTGCATGCACTTATCGACATATAGACCATCATACACTTTGTTCCAGAGTCTACCATGTGGACTCTTTGATAGATGCATATGCACAGCCCATACAACCCCTTGGGCATGAGTCGGAGTGGAAGAGGTCACCTCAATTTTTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGCCTAGAGTTGGTCGTCGTCAGACGTTGAGAATTTCGTCTATGGGAGAAGTGCGGCATGTTCGGAAATGCAACCGGTGCGGGAATAGAGGTCATAACAGAAAAACATGCAGACAACCAGTGAATAATTCTTGA

mRNA sequence

ATGCCTCGTGTGTGGGTTTGTTATGGTGGTCTGTGGAATGAGAGGGAAAATGAATATGAGGGTGGAGAGTTGACGGGTTTCGACATAGACATTGGTACTGCATACAGTGACTTCTTAAGTCGATTATATAGATTAACCAGTATAAGTTCAGAGGAATTTGACCTTATAATAAGATGTGTAGTCCAGTTGGTGTCTAGGGCCCCTGCGTTTGTTATTAGGAACGATGAAAACCCTAACACCTTCTTGACGTGGATTAAGGTGGAGCCGAATTTATCATCGACATCGGTCCCAAACAATATACCATCGGCATCTACATCCTTCCCATGCGATGAATCCAAAAATATTCCTGTGTATAACTTGGGGGATGATGAAGACCATGGTAGTGAACTTTATGGTGGCCAAGATTGGGGGGAATACGAAGATTATGAGGAGTACGGAGATGATGAGGACATAGACACAGAGGTTGATGTAGCTGTGGGAGACGACGATGAGGAAGAGATTCACAAACAGTACACTGAGGTTCCTTCTGTGCCTGAACAGGAGTTTGATTTCGAGGACGGACATTTGGGTGGACGTGTCAACCTTCACACTAGAACATGCACCTGTCGTGAATTTGAGTATTACGAACTTCCATGCTCTCATGCGATCGCTGCATGCACTTATCGACATATAGACCATCATACACTTTGTTCCAGAGTCTACCATGTGGACTCTTTGATAGATGCATATGCACAGCCCATACAACCCCTTGGGCATGAGTCGGAGTGGAAGAGGTCACCTCAATTTTTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGCCTAGAGTTGGTCGTCGTCAGACGTTGAGAATTTCGTCTATGGGAGAAGTGCGGCATGTTCGGAAATGCAACCGGTGCGGGAATAGAGGTCATAACAGAAAAACATGCAGACAACCAGTGAATAATTCTTGA

Coding sequence (CDS)

ATGCCTCGTGTGTGGGTTTGTTATGGTGGTCTGTGGAATGAGAGGGAAAATGAATATGAGGGTGGAGAGTTGACGGGTTTCGACATAGACATTGGTACTGCATACAGTGACTTCTTAAGTCGATTATATAGATTAACCAGTATAAGTTCAGAGGAATTTGACCTTATAATAAGATGTGTAGTCCAGTTGGTGTCTAGGGCCCCTGCGTTTGTTATTAGGAACGATGAAAACCCTAACACCTTCTTGACGTGGATTAAGGTGGAGCCGAATTTATCATCGACATCGGTCCCAAACAATATACCATCGGCATCTACATCCTTCCCATGCGATGAATCCAAAAATATTCCTGTGTATAACTTGGGGGATGATGAAGACCATGGTAGTGAACTTTATGGTGGCCAAGATTGGGGGGAATACGAAGATTATGAGGAGTACGGAGATGATGAGGACATAGACACAGAGGTTGATGTAGCTGTGGGAGACGACGATGAGGAAGAGATTCACAAACAGTACACTGAGGTTCCTTCTGTGCCTGAACAGGAGTTTGATTTCGAGGACGGACATTTGGGTGGACGTGTCAACCTTCACACTAGAACATGCACCTGTCGTGAATTTGAGTATTACGAACTTCCATGCTCTCATGCGATCGCTGCATGCACTTATCGACATATAGACCATCATACACTTTGTTCCAGAGTCTACCATGTGGACTCTTTGATAGATGCATATGCACAGCCCATACAACCCCTTGGGCATGAGTCGGAGTGGAAGAGGTCACCTCAATTTTTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGCCTAGAGTTGGTCGTCGTCAGACGTTGAGAATTTCGTCTATGGGAGAAGTGCGGCATGTTCGGAAATGCAACCGGTGCGGGAATAGAGGTCATAACAGAAAAACATGCAGACAACCAGTGAATAATTCTTGA

Protein sequence

MPRVWVCYGGLWNERENEYEGGELTGFDIDIGTAYSDFLSRLYRLTSISSEEFDLIIRCVVQLVSRAPAFVIRNDENPNTFLTWIKVEPNLSSTSVPNNIPSASTSFPCDESKNIPVYNLGDDEDHGSELYGGQDWGEYEDYEEYGDDEDIDTEVDVAVGDDDEEEIHKQYTEVPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRVPRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVNNS

Homology

[Close]

BLAST of Spg002112 vs. NCBI nr
Match: XP_038895917.1 (uncharacterized protein LOC120084090 [Benincasa hispida])

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-38
Identity = 77/144 (53.47%), Postives = 103/144 (71.53%), Query Frame = 0


Query: 173 EVPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSR 232
           EV  + + EF+  DG L GR N+HTR CTC +F+YYE+PCSH IAAC  ++ID  +LCS 
Sbjct: 29  EVRPIDQHEFEMIDGGLRGRANIHTRICTCLKFDYYEIPCSHVIAACRVQNIDPISLCSW 88

Query: 233 VYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRVPRVGRRQTLRISSMGEVRH 292
           VY ++S++ AYA+PI+  GH S WK+S  F +VE LPP+RVPR+GR +T R  S  E R 
Sbjct: 89  VYSIESVLAAYAEPIRLAGHFSGWKQSSTFINVETLPPKRVPRLGRPRTTRFPSANEFRQ 148

Query: 293 VRKCNRCGNRGHNRKTCRQPVNNS 317
           V +C+RCG +GHN+KTC Q  N +
Sbjct: 149 VHRCSRCGQKGHNKKTCNQSFNTA 172

[Close]

BLAST of Spg002112 vs. NCBI nr
Match: XP_022145141.1 (uncharacterized protein LOC111014656 [Momordica charantia])

HSP 1 Score: 165.6 bits (418), Expect = 6.8e-37
Identity = 77/141 (54.61%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 174 VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRV 233
           V ++ +  F+  DG+L   V+L T+TCT REF+Y+++PCSHAIA  + R I+ +TLC   
Sbjct: 70  VMNIDQFNFEVRDGNLNEDVDLQTQTCTYREFDYFKVPCSHAIAVASSRSINPYTLCDEA 129

Query: 234 YHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRVPRVGRRQTLRISSMGEVRHV 293
           Y V+S + AYA+PI P+G  S WK SP F +++V PP++V RVGRRQT+RI S GEVR  
Sbjct: 130 YTVNSWMLAYAEPIFPVGSSSTWKSSPGFVNIDVQPPKKVVRVGRRQTVRIPSTGEVRPP 189

Query: 294 RKCNRCGNRGHNRKTCRQPVN 315
           RKC+RCG  GHNRKTCR+P+N
Sbjct: 190 RKCSRCGTSGHNRKTCREPLN 210

[Close]

BLAST of Spg002112 vs. NCBI nr
Match: XP_022154803.1 (uncharacterized protein LOC111021969 [Momordica charantia])

HSP 1 Score: 165.2 bits (417), Expect = 8.9e-37
Identity = 77/147 (52.38%), Postives = 98/147 (66.67%), Query Frame = 0


Query: 170 QYTEVPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTL 229
           +Y  V  +   EF+  DG    RVN++++TCTC++F YYE+PCSHAIA    R+I  HTL
Sbjct: 695 RYHHVRPIDRFEFEVHDGATKVRVNINSKTCTCKQFYYYEIPCSHAIAGAVLRNISVHTL 754

Query: 230 CSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRVPRVGRRQTLRISSMGE 289
           CS  Y +D+LI AY +P+ PLG E +W     +    + PPR VPRVGR QT RI S+GE
Sbjct: 755 CSDRYRIDTLIQAYVEPVYPLGDEEDWILPYDYVPTTIQPPRFVPRVGRCQTARIPSVGE 814

Query: 290 VRHVRKCNRCGNRGHNRKTCRQPVNNS 317
           VR V KC RCGN GHN KTCRQP+  +
Sbjct: 815 VRQVHKCGRCGNVGHNCKTCRQPLRTT 841

[Close]

BLAST of Spg002112 vs. NCBI nr
Match: XP_022154803.1 (uncharacterized protein LOC111021969 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-03
Identity = 24/75 (32.00%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 10 GLWNERENEYEGGELTGFDIDIGTAYSDFLSRLYRLTSISSEEFDLIIRCVVQLVSR--A 69
          G WNE    YEGG + G ++D G  Y D +S ++R+T I+ + F+++++C+ +   +   
Sbjct: 17 GQWNEAGTVYEGGVMGGLNVDEGITYRDLVSAIFRMTRINPDIFNIVLQCIYKFEFQYGV 76

Query: 70 PAFVIRNDENPNTFL 83
          P F I +D +   +L
Sbjct: 77 PNFYIFDDTSLGFYL 91

HSP 2 Score: 164.9 bits (416), Expect = 1.2e-36
Identity = 76/141 (53.90%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 174 VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRV 233
           V ++ +  F+  DG+L G V+  ++TCTCREF+Y+++ CSHAIAA + R I+ +TLC   
Sbjct: 14  VMNIDQFNFEVRDGNLNGDVDFQSQTCTCREFDYFKVSCSHAIAAASSRSINPYTLCDEA 73

Query: 234 YHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRVPRVGRRQTLRISSMGEVRHV 293
           Y V+S + AYA+PI P+G  S WK SP F +++V PP++V RVGRRQT+RI S GEVR  
Sbjct: 74  YTVNSWMLAYAEPIFPVGSSSTWKSSPGFVNIDVQPPKKVVRVGRRQTVRILSTGEVRPP 133

Query: 294 RKCNRCGNRGHNRKTCRQPVN 315
            KC+RCG  GHNRKTCR+P+N
Sbjct: 134 CKCSRCGTSGHNRKTCREPLN 154

[Close]

BLAST of Spg002112 vs. NCBI nr
Match: XP_022156122.1 (uncharacterized protein LOC111023087 [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-36
Identity = 76/141 (53.90%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 174 VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRV 233
           V ++ +  F+  DG+L G V+L ++TCTCREF+Y+++ CS AIAA + R I+ +TLC  V
Sbjct: 288 VMNIDQFNFEVRDGNLNGDVDLQSQTCTCREFDYFKVSCSDAIAAASSRSINPYTLCDEV 347

Query: 234 YHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRVPRVGRRQTLRISSMGEVRHV 293
           Y V+S + AYA+PI P+G  S WK SP F +++V PP++V RVGRRQT++I S GEVR  
Sbjct: 348 YTVNSWMLAYAEPIFPVGSSSTWKSSPGFVNIDVQPPKKVVRVGRRQTVKIPSTGEVRPP 407

Query: 294 RKCNRCGNRGHNRKTCRQPVN 315
           R C+RCG  GHNRKTCR+P+N
Sbjct: 408 RNCSRCGTSGHNRKTCREPLN 428

[Close]

BLAST of Spg002112 vs. ExPASy TrEMBL
Match: A0A6J1CVG8 (uncharacterized protein LOC111014656 OS=Momordica charantia OX=3673 GN=LOC111014656 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.3e-37
Identity = 77/141 (54.61%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 174 VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRV 233
           V ++ +  F+  DG+L   V+L T+TCT REF+Y+++PCSHAIA  + R I+ +TLC   
Sbjct: 70  VMNIDQFNFEVRDGNLNEDVDLQTQTCTYREFDYFKVPCSHAIAVASSRSINPYTLCDEA 129

Query: 234 YHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRVPRVGRRQTLRISSMGEVRHV 293
           Y V+S + AYA+PI P+G  S WK SP F +++V PP++V RVGRRQT+RI S GEVR  
Sbjct: 130 YTVNSWMLAYAEPIFPVGSSSTWKSSPGFVNIDVQPPKKVVRVGRRQTVRIPSTGEVRPP 189

Query: 294 RKCNRCGNRGHNRKTCRQPVN 315
           RKC+RCG  GHNRKTCR+P+N
Sbjct: 190 RKCSRCGTSGHNRKTCREPLN 210

[Close]

BLAST of Spg002112 vs. ExPASy TrEMBL
Match: A0A6J1DLB0 (uncharacterized protein LOC111021969 OS=Momordica charantia OX=3673 GN=LOC111021969 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.3e-37
Identity = 77/147 (52.38%), Postives = 98/147 (66.67%), Query Frame = 0


Query: 170 QYTEVPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTL 229
           +Y  V  +   EF+  DG    RVN++++TCTC++F YYE+PCSHAIA    R+I  HTL
Sbjct: 695 RYHHVRPIDRFEFEVHDGATKVRVNINSKTCTCKQFYYYEIPCSHAIAGAVLRNISVHTL 754

Query: 230 CSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRVPRVGRRQTLRISSMGE 289
           CS  Y +D+LI AY +P+ PLG E +W     +    + PPR VPRVGR QT RI S+GE
Sbjct: 755 CSDRYRIDTLIQAYVEPVYPLGDEEDWILPYDYVPTTIQPPRFVPRVGRCQTARIPSVGE 814

Query: 290 VRHVRKCNRCGNRGHNRKTCRQPVNNS 317
           VR V KC RCGN GHN KTCRQP+  +
Sbjct: 815 VRQVHKCGRCGNVGHNCKTCRQPLRTT 841

[Close]

BLAST of Spg002112 vs. ExPASy TrEMBL
Match: A0A6J1DLB0 (uncharacterized protein LOC111021969 OS=Momordica charantia OX=3673 GN=LOC111021969 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.2e-04
Identity = 24/75 (32.00%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 10 GLWNERENEYEGGELTGFDIDIGTAYSDFLSRLYRLTSISSEEFDLIIRCVVQLVSR--A 69
          G WNE    YEGG + G ++D G  Y D +S ++R+T I+ + F+++++C+ +   +   
Sbjct: 17 GQWNEAGTVYEGGVMGGLNVDEGITYRDLVSAIFRMTRINPDIFNIVLQCIYKFEFQYGV 76

Query: 70 PAFVIRNDENPNTFL 83
          P F I +D +   +L
Sbjct: 77 PNFYIFDDTSLGFYL 91

HSP 2 Score: 164.9 bits (416), Expect = 5.6e-37
Identity = 76/141 (53.90%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 174 VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRV 233
           V ++ +  F+  DG+L G V+  ++TCTCREF+Y+++ CSHAIAA + R I+ +TLC   
Sbjct: 14  VMNIDQFNFEVRDGNLNGDVDFQSQTCTCREFDYFKVSCSHAIAAASSRSINPYTLCDEA 73

Query: 234 YHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRVPRVGRRQTLRISSMGEVRHV 293
           Y V+S + AYA+PI P+G  S WK SP F +++V PP++V RVGRRQT+RI S GEVR  
Sbjct: 74  YTVNSWMLAYAEPIFPVGSSSTWKSSPGFVNIDVQPPKKVVRVGRRQTVRILSTGEVRPP 133

Query: 294 RKCNRCGNRGHNRKTCRQPVN 315
            KC+RCG  GHNRKTCR+P+N
Sbjct: 134 CKCSRCGTSGHNRKTCREPLN 154

[Close]

BLAST of Spg002112 vs. ExPASy TrEMBL
Match: A0A6J1DR67 (uncharacterized protein LOC111023087 OS=Momordica charantia OX=3673 GN=LOC111023087 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 5.6e-37
Identity = 76/141 (53.90%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 174 VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRV 233
           V ++ +  F+  DG+L G V+L ++TCTCREF+Y+++ CS AIAA + R I+ +TLC  V
Sbjct: 288 VMNIDQFNFEVRDGNLNGDVDLQSQTCTCREFDYFKVSCSDAIAAASSRSINPYTLCDEV 347

Query: 234 YHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRVPRVGRRQTLRISSMGEVRHV 293
           Y V+S + AYA+PI P+G  S WK SP F +++V PP++V RVGRRQT++I S GEVR  
Sbjct: 348 YTVNSWMLAYAEPIFPVGSSSTWKSSPGFVNIDVQPPKKVVRVGRRQTVKIPSTGEVRPP 407

Query: 294 RKCNRCGNRGHNRKTCRQPVN 315
           R C+RCG  GHNRKTCR+P+N
Sbjct: 408 RNCSRCGTSGHNRKTCREPLN 428

[Close]

BLAST of Spg002112 vs. ExPASy TrEMBL
Match: A0A6J1CQH9 (protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111013823 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 7.4e-37
Identity = 74/143 (51.75%), Postives = 99/143 (69.23%), Query Frame = 0


Query: 174 VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRV 233
           V ++ +      DG+L G V+ ++RTC+CREF+Y+++PCSHAIA    R+I+ +TLC   
Sbjct: 246 VVNIDQFHVQVRDGNLDGIVDFNSRTCSCREFDYFKIPCSHAIARAMMRNINPYTLCDEX 305

Query: 234 YHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRVPRVGRRQTLRISSMGEVRHV 293
           Y  +S + AYA+PI P+GH S W  SP F D  V  P  VPRVGRR+T+RI+S GEVR  
Sbjct: 306 YTTNSXVMAYAEPIFPIGHVSTWNNSPDFVDTPVEAPDMVPRVGRRRTVRIASTGEVRQT 365

Query: 294 RKCNRCGNRGHNRKTCRQPVNNS 317
           RKC RCG  GHNRKTC +P+N +
Sbjct: 366 RKCGRCGTSGHNRKTCNEPINTA 388

[Close]

BLAST of Spg002112 vs. TAIR 10
Match: AT1G49920.1 (MuDR family transposase )

HSP 1 Score: 47.4 bits (111), Expect = 2.5e-05
Identity = 26/80 (32.50%), Postives = 36/80 (45.00%), Query Frame = 0


Query: 191 GRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPL 250
           G V L+  TCTC EF+  + PC HA+A C    I+        Y V+     Y+    P+
Sbjct: 650 GIVQLNDTTCTCGEFQKNKFPCLHALAVCDELKINPLQYVDDCYTVERYHKTYSAKFSPV 709

Query: 251 GHESEWKRSPQFFDVEVLPP 271
              S W   P+ + V  L P
Sbjct: 710 PELSAW---PEAYGVPTLIP 726

[Close]

BLAST of Spg002112 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 45.8 bits (107), Expect = 7.3e-05
Identity = 21/64 (32.81%), Postives = 30/64 (46.88%), Query Frame = 0


Query: 193 VNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGH 252
           V L+  TCTCR+F+ Y+ PC HA+A      I+        Y V+     YA    P+  
Sbjct: 636 VQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPD 695

Query: 253 ESEW 257
            + W
Sbjct: 696 VAAW 699

The following BLAST results are available for this feature:

BLAST of Spg002112 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895917.1	1.6e-38	53.47	uncharacterized protein LOC120084090 [Benincasa hispida]	[more]
XP_022145141.1	6.8e-37	54.61	uncharacterized protein LOC111014656 [Momordica charantia]	[more]
XP_022154803.1	8.9e-37	52.38	uncharacterized protein LOC111021969 [Momordica charantia]	[more]
XP_022154803.1	1.7e-03	32.00	uncharacterized protein LOC111021969 [Momordica charantia]	[more]
XP_022156122.1	1.2e-36	53.90	uncharacterized protein LOC111023087 [Momordica charantia]	[more]

BLAST of Spg002112 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg002112 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVG8	3.3e-37	54.61	uncharacterized protein LOC111014656 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1DLB0	4.3e-37	52.38	uncharacterized protein LOC111021969 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1DLB0	8.2e-04	32.00	uncharacterized protein LOC111021969 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1DR67	5.6e-37	53.90	uncharacterized protein LOC111023087 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CQH9	7.4e-37	51.75	protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Spg002112 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49920.1	2.5e-05	32.50	MuDR family transposase	[more]
AT1G64260.1	7.3e-05	32.81	MuDR family transposase	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 198..225 e-value: 1.5E-9 score: 47.8
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 193..221 e-value: 5.4E-9 score: 35.5
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 191..223 score: 9.82901
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 294..311 score: 8.927475

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002112.1	Spg002112.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding