Spg002085 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002085
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold2: 27092679 .. 27095918 (+)
RNA-Seq Expression	Spg002085
Synteny	Spg002085

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAGTCTTACATGGGTTCTACTGCTCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGGACTATGGAAGAAATAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGAGTCAGGTTGAGAAGAAACATATCGCTGGATCAAGTCAAACCCAAGTCATAAAAAATCACGACAAAGGAAAGACTATAGTGCAAGATGATCAACCACAATGTTCTGCTTCGATCGCTTCATTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCGATCGGGTATCAACCACCGAAATTTCAGCAGTTTGATGGAAAGGGCAATCCTAAACAACATATCGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGCAATTCATTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTAAGTCAATAGACAAATGGAAGGTACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGACGAACTGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTTCGTTGAGATGTGCATTCAAGGCATGCACTGAGAACTCCTCTACATCCTTAAAGGTATAAAGCCTCGCACCTTTGAAGAACTAGCAACTCACACCCACGATATGGAGCTGAGTATTGCTAGTCGAGAAAACCAGGACCTTCTACTTCCTAACTTGAAGATAGAAGGAAAGGATGCTGAAATGACTACAGAGGAATCTATGGTCGTAAACACAATTCTTCTCAAGTCATCTTCAAAAGAAAAGCGACAAGAAAATGGAACACGTCGCTTAACTTTAAAGGAAAGACAGAAGAAAATCTATCATTTTCCTAATTCTGACATCCCTGACATGTTGGAAGCGCAACTGATAGAACTTCCTAAGTGTAAACGACTGAAGGAAATGGATAAAGTCGATGATCCCAACTATTGCAAGTATCATCGAGTTATCAGTCATCCAGTGGAGAAATGCTTTGTCTTAAAAGAGCTAATCCTAAGACTAGCTAAAGAGGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCAGACTACAGTCAAAGGAAAGAGCAAACATCAAAGAAAGAAGGATCCTATGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAATGGTGAACAGAGGACTTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCATCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAAAAGAAGAAAATCAATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCTACATCGAAGAAAAGTCGACCTTCAACATCTATTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCAATGAAGTAAACAGCAGCGAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAGTCAAATCTCATTATCTTGACCAGTCCTATAAATGAAGGATCCGATCAAGACAATGATGAAGATAAAAGCTTTTAAAATGTAAAAACTCCTTATCGTAAGAGTCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAATCCTGAACTACGTTATGACTTGATCCCTATTCCTCAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTGCAAATAAAAAAAGAAGGTGCAACAAATATTGAAGCATGACAATACAAATTGAAGACTTCACTACTGGGGGCAACACGACAAATTGAAGTTGTACACCGTTATAAATGTGAAGCTACGAGTTGGATGAATAAAAGAAGACTTCATTCCTCCAAATTCAATGTCTCGCTAGCCTCAAGTTTGGTGTTTTCACTCACCCTAAGTTCGTTGTTCCCTCTTCTTCAAGTTCGAAGGTTCTCACGTGCTTTTCTGGAGTTCCTTCTCTCCGAGTTTGAAGGTTCTCACGCGCTTCGATGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCCATATGCTTCGCTGTAGTTCCTTATCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGTAGTTCCTTCTCTCCAAGTTCGAGGGTTCTTACGTTGTATGCTACTACGTTGTTCCTTCTCCAAGATTGAAGGTTCTCCGTTGCATGCTCCTGCGTTGCTCCTTCTCCAAGTTCGAAGGTTTGCACGTGTTGTTATGCTGCGTCGCTGTTGCTTCCTTCACCAAGTTCAAAGGTTCCCACGTTGTGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCAAGTGTTACGTTGTTTCGCTGTTGCTTCTTTCTCCAAGTTCGAAGGTTCACTCGCTGTATGCTGCTTCGCTGCTATTTCTTCTCCAAGTTCGAAGGTTCGTATGTTGTACACTACTTCGTTGTTGTTTCCTCAAAAAGTTGGAAGGTTCCTGTGGCGCTGTTTCGCTGTTCATTCTCCAAGTTCGAAGGTTCTGACGCTACGCTGCTTCCTTTTCTGCATTCGAAGGTTTTCATGCTAAGCTGCTTTGTTGTTCCTACTCCAAGTTCAAAGGTTCTGCTTTGTTGTAGACGTTGCAGTAGTAAAGGAGTCTAA

mRNA sequence

ATGAACAAGTCTTACATGGGTTCTACTGCTCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGGACTATGGAAGAAATAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGAGTCAGGTTGAGAAGAAACATATCGCTGGATCAAGTCAAACCCAAAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAATGGTGAACAGAGGACTTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCATCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAAAAGAAGAAAATCAATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCTACATCGAAGAAAAGTCGACCTTCAACATCTATTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCAATGAAGTAAACAGCAGCGAGAAGCTTCATAGTAGCATCCTGTTCTCACGCGCTTCGATGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCCATATGCTTCGCTGTAGTTCCTTATCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGTAGTTCCTTCTCTCCAAGTTCGAGGGTTCTTACGTTGTATGCTACTACGTTGTTCCTTCTCCAAGATTGAAGGTTCTCCGTTGCATGCTCCTGCGTTGCTCCTTCTCCAAGTTCGAAGGTTTGCACGTGTTGTTATGCTGCGTCGCTGTTGCTTCCTTCACCAAGTTCAAAGGTTCCCACGTTGTGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCAAGTGTTACGTTGTTTCGCTGTTGCTTCTTTCTCCAAGTTCGAAGGTTCACTCGCTTTGGAAGGTTCCTGTGGCGCTGTTTCGCTGTTCATTCTCCAAGTTCGAAGGTTCTGACGCTACGCTGCTTCCTTTTCTGCATTCGAAGGTTTTCATGCTAAGCTGCTTTGTTGTTCCTACTCCAAGTTCAAAGGTTCTGCTTTGTTGTAGACGTTGCAGTAGTAAAGGAGTCTAA

Coding sequence (CDS)

ATGAACAAGTCTTACATGGGTTCTACTGCTCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGGACTATGGAAGAAATAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGAGTCAGGTTGAGAAGAAACATATCGCTGGATCAAGTCAAACCCAAAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAATGGTGAACAGAGGACTTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCATCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAAAAGAAGAAAATCAATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCTACATCGAAGAAAAGTCGACCTTCAACATCTATTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCAATGAAGTAAACAGCAGCGAGAAGCTTCATAGTAGCATCCTGTTCTCACGCGCTTCGATGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCCATATGCTTCGCTGTAGTTCCTTATCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGTAGTTCCTTCTCTCCAAGTTCGAGGGTTCTTACGTTGTATGCTACTACGTTGTTCCTTCTCCAAGATTGAAGGTTCTCCGTTGCATGCTCCTGCGTTGCTCCTTCTCCAAGTTCGAAGGTTTGCACGTGTTGTTATGCTGCGTCGCTGTTGCTTCCTTCACCAAGTTCAAAGGTTCCCACGTTGTGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCAAGTGTTACGTTGTTTCGCTGTTGCTTCTTTCTCCAAGTTCGAAGGTTCACTCGCTTTGGAAGGTTCCTGTGGCGCTGTTTCGCTGTTCATTCTCCAAGTTCGAAGGTTCTGACGCTACGCTGCTTCCTTTTCTGCATTCGAAGGTTTTCATGCTAAGCTGCTTTGTTGTTCCTACTCCAAGTTCAAAGGTTCTGCTTTGTTGTAGACGTTGCAGTAGTAAAGGAGTCTAA

Protein sequence

MNKSYMGSTAHCCFNELTLQEDKASIVAGQETTLQGAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTMEEIMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRKRSKKFSQPQQLVMLNKSFSKTFHKKEKENFATSYCIDVEEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSILFSRASMEFLLSKFEGSHAFRCSSFSPSSKVLTRFAAVPSLQIRRFHMLRCSSLSPSSKVLTRFAVVPSLQVRGFLRCMLLRCSFSKIEGSPLHAPALLLLQVRRFARVVMLRRCCFLHQVQRFPRCAVVLLPSPSSKVLKCYVVSLLLLSPSSKVHSLWKVPVALFRCSFSKFEGSDATLLPFLHSKVFMLSCFVVPTPSSKVLLCCRRCSSKGV

Homology

[Close]

BLAST of Spg002085 vs. NCBI nr
Match: KAA0025969.1 (hypothetical protein E6C27_scaffold34G002840 [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 1.8e-28
Identity = 80/158 (50.63%), Postives = 106/158 (67.09%), Query Frame = 0


Query: 115 RSKKFSQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKNG 174
           + K F +PQ+L+ L + FS++F   H KE     T +   +          +EVDNS   
Sbjct: 10  KDKDFLRPQRLITLTEFFSRSFLQDHPKEILEVTTCHTASIVEVDNNFVSSKEVDNSNEI 69

Query: 175 EQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPST 234
           +QRTSVFDRIKP TT  SVFQR+ M   +EENQCPTST+T+ SAF+RLS+STSKK RPST
Sbjct: 70  KQRTSVFDRIKPLTTRSSVFQRLRMATKEEENQCPTSTYTQTSAFKRLSISTSKKDRPST 129

Query: 235 SIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI 260
             FDRLK+TNDQ +R++  L+ K F+E N  +K+HS +
Sbjct: 130 YAFDRLKMTNDQQQREVKYLKAKPFHEENDDDKIHSRV 167

[Close]

BLAST of Spg002085 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 6.7e-28
Identity = 97/219 (44.29%), Postives = 128/219 (58.45%), Query Frame = 0


Query: 69  EEIMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RSKKF------- 128
           E I  E +E I    K  +ER +     KS   +KH  G+   ++K  R+KK        
Sbjct: 10  EPIEDEGEEWIVVAHK--KERQTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIK 69

Query: 129 ------SQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKN 188
                  QP+Q + L + F ++F   H +E     T +   +          EEVDNS  
Sbjct: 70  GKDEDCLQPRQSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNE 129

Query: 189 GEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPS 248
            +QRTSVFDRIKP TT  SVFQR+SM   +EENQCPTST+ R SAF+RLS+STSKK RPS
Sbjct: 130 IKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPS 189

Query: 249 TSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI 260
           TS FDRLK+TNDQ +R+M +L+ K F+E N  +K+HS +
Sbjct: 190 TSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRV 226

[Close]

BLAST of Spg002085 vs. NCBI nr
Match: KAA0066532.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK25918.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 8.7e-28
Identity = 98/229 (42.79%), Postives = 135/229 (58.95%), Query Frame = 0


Query: 60  VMMTETRTMEE-IMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RS 119
           +M + ++  EE I  E +E I    K  +ER +    +KS   +KH  G+   ++K  R+
Sbjct: 111 IMTSNSQNKEEPIEDEGEEWIVVAHK--KERQTSFVQMKSHFHQKHSKGNISHKKKGIRN 170

Query: 120 KK-------------FSQPQQLVMLNKSFSKTFHKKEKENFA------TSYCIDV----- 179
           KK             F QP+Q + L +   ++F +   E         T+  I+V     
Sbjct: 171 KKMWKPKPIKGKDEDFLQPRQSITLTEFLLRSFLEDHPEEVLEVTACHTTSIIEVDNNYD 230

Query: 180 --EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLS 239
             EEVDNS   +QRTS+FD IKP TT  SVFQR+SM   +EENQCPTST+ R SAF+RLS
Sbjct: 231 SYEEVDNSNEIKQRTSIFDHIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLS 290

Query: 240 VSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI 260
           +STSKK RPSTS FDRLK+TNDQ +R+M +L+ K F+E N  +K+HS +
Sbjct: 291 ISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRV 337

[Close]

BLAST of Spg002085 vs. NCBI nr
Match: TYK04207.1 (hypothetical protein E5676_scaffold24967G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-27
Identity = 79/158 (50.00%), Postives = 105/158 (66.46%), Query Frame = 0


Query: 115 RSKKFSQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKNG 174
           + K   +P++L+ L + FS++F   H KE     T +   +          +EVDNS   
Sbjct: 10  KDKDILRPRRLITLTEFFSRSFLQDHPKEILEVTTCHTASIVEVDNNYVSSKEVDNSNEI 69

Query: 175 EQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPST 234
           +QRTSVFDRIKP TT  SVFQR+SM   +EENQCPTST+T+ SAF+RLS+STSKK RPST
Sbjct: 70  KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYTQTSAFKRLSISTSKKDRPST 129

Query: 235 SIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI 260
             FDRLK+ NDQ +R+M  L+ K F+E N  +K+HS +
Sbjct: 130 YAFDRLKMKNDQQQREMKYLKAKPFHEENDDDKIHSRV 167

[Close]

BLAST of Spg002085 vs. NCBI nr
Match: KAA0052018.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-27
Identity = 94/214 (43.93%), Postives = 127/214 (59.35%), Query Frame = 0


Query: 74  EMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RSKK------------- 133
           E +E I+ + K  +ER +      S   +KH  G+   ++K  R+KK             
Sbjct: 369 EGEEWIDVVHK--KERQTSSVQTNSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKDED 428

Query: 134 FSQPQQLVMLNKSFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKNGEQRT 193
           F QP+Q + L +   ++F +   E         T+  ++V       EE+DNS   +QRT
Sbjct: 429 FLQPRQSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRT 488

Query: 194 SVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPSTSIFD 253
           SVFDRIKP TT  SVFQR+SM   KEENQCPTST+ R SAF+RLS+STSKK RPSTS FD
Sbjct: 489 SVFDRIKPLTTRSSVFQRLSMATKKEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFD 548

Query: 254 RLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI 260
           RLK+TNDQ +R+M  L+ K F+E N  +K+HS +
Sbjct: 549 RLKMTNDQQQREMKTLKAKPFHEENDDDKIHSRV 580

[Close]

BLAST of Spg002085 vs. ExPASy TrEMBL
Match: A0A5A7SL36 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002840 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.5e-29
Identity = 80/158 (50.63%), Postives = 106/158 (67.09%), Query Frame = 0


Query: 115 RSKKFSQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKNG 174
           + K F +PQ+L+ L + FS++F   H KE     T +   +          +EVDNS   
Sbjct: 10  KDKDFLRPQRLITLTEFFSRSFLQDHPKEILEVTTCHTASIVEVDNNFVSSKEVDNSNEI 69

Query: 175 EQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPST 234
           +QRTSVFDRIKP TT  SVFQR+ M   +EENQCPTST+T+ SAF+RLS+STSKK RPST
Sbjct: 70  KQRTSVFDRIKPLTTRSSVFQRLRMATKEEENQCPTSTYTQTSAFKRLSISTSKKDRPST 129

Query: 235 SIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI 260
             FDRLK+TNDQ +R++  L+ K F+E N  +K+HS +
Sbjct: 130 YAFDRLKMTNDQQQREVKYLKAKPFHEENDDDKIHSRV 167

[Close]

BLAST of Spg002085 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.2e-28
Identity = 97/219 (44.29%), Postives = 128/219 (58.45%), Query Frame = 0


Query: 69  EEIMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RSKKF------- 128
           E I  E +E I    K  +ER +     KS   +KH  G+   ++K  R+KK        
Sbjct: 10  EPIEDEGEEWIVVAHK--KERQTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIK 69

Query: 129 ------SQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKN 188
                  QP+Q + L + F ++F   H +E     T +   +          EEVDNS  
Sbjct: 70  GKDEDCLQPRQSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNE 129

Query: 189 GEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPS 248
            +QRTSVFDRIKP TT  SVFQR+SM   +EENQCPTST+ R SAF+RLS+STSKK RPS
Sbjct: 130 IKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPS 189

Query: 249 TSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI 260
           TS FDRLK+TNDQ +R+M +L+ K F+E N  +K+HS +
Sbjct: 190 TSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRV 226

[Close]

BLAST of Spg002085 vs. ExPASy TrEMBL
Match: A0A5D3DQU7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00080 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.2e-28
Identity = 98/229 (42.79%), Postives = 135/229 (58.95%), Query Frame = 0


Query: 60  VMMTETRTMEE-IMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RS 119
           +M + ++  EE I  E +E I    K  +ER +    +KS   +KH  G+   ++K  R+
Sbjct: 111 IMTSNSQNKEEPIEDEGEEWIVVAHK--KERQTSFVQMKSHFHQKHSKGNISHKKKGIRN 170

Query: 120 KK-------------FSQPQQLVMLNKSFSKTFHKKEKENFA------TSYCIDV----- 179
           KK             F QP+Q + L +   ++F +   E         T+  I+V     
Sbjct: 171 KKMWKPKPIKGKDEDFLQPRQSITLTEFLLRSFLEDHPEEVLEVTACHTTSIIEVDNNYD 230

Query: 180 --EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLS 239
             EEVDNS   +QRTS+FD IKP TT  SVFQR+SM   +EENQCPTST+ R SAF+RLS
Sbjct: 231 SYEEVDNSNEIKQRTSIFDHIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLS 290

Query: 240 VSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI 260
           +STSKK RPSTS FDRLK+TNDQ +R+M +L+ K F+E N  +K+HS +
Sbjct: 291 ISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRV 337

[Close]

BLAST of Spg002085 vs. ExPASy TrEMBL
Match: A0A5D3BXG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00060 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.5e-28
Identity = 79/158 (50.00%), Postives = 105/158 (66.46%), Query Frame = 0


Query: 115 RSKKFSQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKNG 174
           + K   +P++L+ L + FS++F   H KE     T +   +          +EVDNS   
Sbjct: 10  KDKDILRPRRLITLTEFFSRSFLQDHPKEILEVTTCHTASIVEVDNNYVSSKEVDNSNEI 69

Query: 175 EQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPST 234
           +QRTSVFDRIKP TT  SVFQR+SM   +EENQCPTST+T+ SAF+RLS+STSKK RPST
Sbjct: 70  KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYTQTSAFKRLSISTSKKDRPST 129

Query: 235 SIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI 260
             FDRLK+ NDQ +R+M  L+ K F+E N  +K+HS +
Sbjct: 130 YAFDRLKMKNDQQQREMKYLKAKPFHEENDDDKIHSRV 167

[Close]

BLAST of Spg002085 vs. ExPASy TrEMBL
Match: A0A5A7U9R6 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00560 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.2e-28
Identity = 80/158 (50.63%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 115 RSKKFSQPQQLVMLNKSFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKNG 174
           + + F QP+QL+ L +  S++F +   E         T+  +++       EEVDNS   
Sbjct: 10  KDEDFFQPRQLITLAEFLSRSFLEDHPEKILEVTVCHTTSIVEIDNNYDFYEEVDNSNEI 69

Query: 175 EQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPST 234
           +QRTSVFDRIK  TT  SVFQR+SM   +EENQ PTST+TR SAF+RLS+STSKK RPST
Sbjct: 70  KQRTSVFDRIKTLTTQSSVFQRLSMATKEEENQYPTSTYTRTSAFKRLSISTSKKDRPST 129

Query: 235 SIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI 260
           S FDRLK+TNDQ +R+M +L+ K F+E N  +K+HS +
Sbjct: 130 SSFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRV 167

The following BLAST results are available for this feature:

BLAST of Spg002085 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025969.1	1.8e-28	50.63	hypothetical protein E6C27_scaffold34G002840 [Cucumis melo var. makuwa]	[more]
KAA0044978.1	6.7e-28	44.29	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0066532.1	8.7e-28	42.79	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK25918.1 retrotranspos...	[more]
TYK04207.1	1.1e-27	50.00	hypothetical protein E5676_scaffold24967G00060 [Cucumis melo var. makuwa]	[more]
KAA0052018.1	1.5e-27	43.93	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg002085 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg002085 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SL36	8.5e-29	50.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TQ06	3.2e-28	44.29	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DQU7	4.2e-28	42.79	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3BXG7	5.5e-28	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9R6	7.2e-28	50.63	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Spg002085 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 68..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002085.1	Spg002085.1	mRNA