Spg002068 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg002068
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description30S ribosomal protein S8, chloroplastic
Locationscaffold2: 26433608 .. 26437423 (-)
RNA-Seq ExpressionSpg002068
SyntenySpg002068
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCATTGTAATTCTTTCTACTTCTCGAGGTATAATGACAAACCGAGAAGCTCGATTACAGGGAATCGACGGAGAAATTTTATGTTATATATGGTAATCTTTATGATATTCGAATTATACACAAAACTTCCCTATTTGTAAAAAAAAAAAAAAAAAAGAAGGTGGGTTTCTAATACCACTCCTCCTTCATTAATTGATACTTTGAAAGGGATTTCTCATCTGGAATGAAAGAACAAAAAAGGATTTATGAAGGTTTAATTAATTAATCACCGAAAACTCATAGTGGGCAAATTCATGAATTGAATCAAATGAGCCTTTTTTTAACTAAGCAGTAGAGTCACGCTCTTTAAACGCCCTAAGAAATAGGCATAAGCACACCAGGCGAGGAATCCCTTACTTGTTCAGCTGGTGGATGCAGTATAGTACGAGAATGTATAAGCCAAGTTCGGTACACCAAGTCGTTACACAAATCTCTTTGTTTCAAATAGGTTATCCCATATCAGTCGGCCAATCAACAAAGATTTGAAGAATGACCGACCCGTTTTTGAGCCTACGAAAGGAAATTCCATTAGAACATATAACAAAGGCGTGAATGGGAGAATACGGTACCATAAGGAGGAATTCCTCGTTCTTCATGACTACCCGAAGGAGGAGGTATATCCTCGATTATTTTTCGAAGCTTTCTCATCATAATCGAATGTGGAACTTGACCCACTGATTTCGACAAATCAAAATATTCAAGGGATGCCACTGTATACCAACTAGCAACAGTACTAGCTAGTTGCATTTCATTTTCCTCGTTAGGAACATGCCTTTTTATTGATTTTGACGATTGGATTTCTTTATGAATGGAAAAGGGGTGCTTCAGATCAGGAGTAATCACTAGTGAGAGGGCAAAAAGAAGGGGGAAGGACAAAGGAAAGAGCGATGCCTACATTAAATCAATTGATTTGTCATGGTAGAGAAGAAAAACGGCTCTTCCGAAAGAAGCATCTGGAAATGACTTGTCATGGGCTTATGCGATGAAGCTCGGGAAAATATTTTGTGCTTATGTGGATGGGTCACTTCAATTTCCCAAGATTCGAGAAGGATATTTTCCTACAACAGATGAAAAGTGCTTAGCTTCAAATGAGATGACTTGTGTACTTCCTTTGAGCCCCATATACACCGTCACCTCTTTTGCGACCACTAAAGATATTTGGGAAACCATAAGTCATCTTGATTCTCAGGATGATTATCCACCTTTCTATTGTGGATGGATTGAGCCAATGTTTTCCGCAATTCCAATACGAGAAGCGGATTCCACTTTTATTTATTATAGATTTTGCACCTTCAAAAGTTCCAGGCATATTGAATTACAGAAAGAGATGAATGTGTACTTTTTGTTGCTACAGGGCAAGAAAGAGAGGTGGGGAAGATCAATTTGTGGTGTCCCAATTGTTGACGCATGGTCCCTCTGAAATCAAGAAAGACATTCTTGATATTTTAGAGATGACAACGACGGTATGTATGCTTCTCCCCTTTAGATTAGTTCTAAGGTTGTATGCTTAGTCTTAATAATTGATTTATAATAGTTTTCTAAATTTTTGCCAATGTATTGGTATTTTGGTAGAAATAAAACTAACTACGAATTGATCCCAATTCGCTTTCGCTAATGAAATTAGGGAATTCCAATCCTTCAATCTTGACCCGGATGGCAGTGTCTCGACCCTGATTTGTCCTTCAGCGTGCGTTGACTTTTGTTGACCGAGGGTATTTTCGTTATTTTGCTTCGGTTTAGCTCATTTTAGCCCAGAATTGGCTCCAAACCTCCGTCGAGAACCTATACACATATTATACTCATTTTAAAGATTTTTTCACAAGAAATTCAACTAAGATAAGGAAATTGGGAGATTCTAAATGTATAACAAATTAGACCGATCAGCCACCAACGGTAAATTTGTTTGAGATGGGGGAAGATGTGGCCTGCAAGACAGAAGAAACTTGCACACCAGTGTGGTGCTTACCACACCGCCTCTGATGCTTAAGTCACCGAGGAGAAAGATGAGAAAGCTAGAGAGCAAGACGAGGAGTAGAGCTTAGAGAATAGTTTTGGGATCCCTTCTTCAATGACGAAGAAAGGTTTATATACTTGTTCCTGCCTTAGGGTTTCTAGGCACTTGGAGACCGATTTGGGCTAAACTAGGTTAAACTAGGGCGGCCAAAGACACTAGAGACTAAGCGAACGGGGAGAGATTCGGCCCACACGAGTGGGTCGAGTGGTCAGTCGAGGCCGAGCATGGGATTGGGTCGAGGCCCAATCCCTTCGGCTCACCTTCCTCTGGGGCCCGCTTCCTGGTCATGTTTTTGGGTTGGTGCCGCACTATCCTGCTTAGTCCTTGAATTCTAGAGTGGTCCAGAATTACCTATAACATTAAGCCCTCACTCTTGAATTGGGATTCAGGTTTGACTTATTGAAATAAGTTAAGCTCCTTAAGCCCAATTTAAGAGTAAGGATCTTCCCCTTATGCTGATTCATATTTTGGTTTCTCGTTATCTGCAAGAGAGAACTAAACTGGACAAAGCAGAGGCTCCCTGAATATGGGTTAAGTAAGACCAAAATGAGAAAAGTGAGGGGCTGAAGAAATAACCGGCCACGGCCTCGTCCTCGGGATGAGGCTGAGGCTAACGTTTGGAGCGAGTCCAAACTTTCGTGCCTTTCGCCCCTAATTTTGGACGTTGTTCAATTCATTCCTCTGTTTCGAAGCCCCCTATGTAAGTGCTTCTCTTGCTTAGTCATTTATGTGGCACATGTGGCAAGACCATAGGGTTGCCCTCGGCCACCTTTCATATTATTGAAATTTTTGAGTTCCTGCATCGAAATGTTAATTTCTGCAAAAGAAAAATGAGGGAAGAGACTAAGGTCGGCCTCGGCCTCAAGTCCCTGCATTCATATGTCAATCCTTGTAGGAGGAAAATGAGTGAATAGGCTAAAACATGTAATCTTTGATCAAGACATGCTAACCTAGTTTTCCTTTTGTTTAATAGGAAGTGCATATCCCCTATGTAGCCCCCTTACTTAAGTAAAATTTTAATGAAACATAAAATATAGTTGAGTAAAGAGAAGAGTACCATGAAAGTTTAGCACCAGTCGTGCACATAGTGTCTCAGGCTCGCATGTAGTGGCATGGGCTCTAAATATGAAAGTTTAGACTCGCATGTAGGCATGGGAACTAAGATGGAAAGCTTAGGCTTGCACGTAGGCGTGGGCGCCAAGCTCGAGGGCTCGGGCTGGCATGTAGGCGTGGGCACTAAGCTTGAAATCTTAGGCTCGCATGTAGGCGAGGGCACTAAGCTGAAAAGCTTAGGCTTGCATGTAGGTGTGGGCACCAAGCTGAAAAGCTTAGGCTCGCATGTAGGCGTGGGCACCAAGCTCGAGGGCTCGCATGTAGGCGTGGACACTAAACTAGAAAGCTTAGGCTTGCTTGTACGCGTGGGCACTAAGTTGAAAAACTTAAGCTCGCATGTAGGTGTGAGCTTTAAGCTAAAAAGCTTAGACTCACATGTAGGCATGGGCTCTAAGCGGAAAGGCCTAGGCTCGCATGTTGATGTGGGCACTAAGCTGGAAGGCTTAGGCTCACATGTATTCGATCTCACTTGTAACAATAGGATAGGCCTTGGTCACAACCATGGCTGGGGTCGATCTCGGCCTTGGGCATGGATATGGTCGGCCTTGGCCTCAACCATATCTGGAGTCAGCCTCGAACAATCTATCGTCTTTTGTATCTTGCTTCTTTGCTTCAATCTTGATCTCGTCTTGTGTCAACAACATTGA

mRNA sequence

ATGCGCATTGTAATTCTTTCTACTTCTCGAGGTATAATGACAAACCGAGAAGCTCGATTACAGGGAATCGACGGAGAAATTTTATGTTATATATGGTTATCCCATATCAGTCGGCCAATCAACAAAGATTTGAAGAATGACCGACCCGTTTTTGAGCCTACGAAAGGAAATTCCATTAGAACATATAACAAAGGCGTGAATGGGAGAATACGGTACCATAAGGAGGAATTCCTCGTTCTTCATGACTACCCGAAGGAGGAGAGAAGAAAAACGGCTCTTCCGAAAGAAGCATCTGGAAATGACTTGTCATGGGCTTATGCGATGAAGCTCGGGAAAATATTTTGTGCTTATGTGGATGGGTCACTTCAATTTCCCAAGATTCGAGAAGGATATTTTCCTACAACAGATGAAAAGTGCTTAGCTTCAAATGAGATGACTTGTGTACTTCCTTTGAGCCCCATATACACCGTCACCTCTTTTGCGACCACTAAAGATATTTGGGAAACCATAAGTCATCTTGATTCTCAGGATGATTATCCACCTTTCTATTGTGGATGGATTGAGCCAATGTTTTCCGCAATTCCAATACGAGAAGCGGATTCCACTTTTATTTATTATAGATTTTGCACCTTCAAAAGTTCCAGGCATATTGAATTACAGAAAGAGATGAATGTGTACTTTTTGTTGCTACAGGGCAAGAAAGAGAGGTGGGGAAGATCAATTTGTGGTGTCCCAATTGTTGACGCATGGGAATTCCAATCCTTCAATCTTGACCCGGATGGCAGTGTCTCGACCCTGATTTGTCCTTCAGCGCTCGCATGTAGTGGCATGGGCTCTAAATATGAAAGTTTAGACTCGCATGTAGGCATGGGAACTAAGATGGAAAGCTTAGGCTTGCACGTAGGCGTGGGCGCCAAGCTCGAGGGCTCGGGCTGGCATGTAGGCGTGGGCACTAAGCTTGAAATCTTAGGCTCGCATGTAGGCGAGGGCACTAAGCTGAAAAGCTTAGGCTTGCATGTAGGTGTGGGCACCAAGCTGAAAAGCTTAGGCTCGCATGTAGGCGTGGGCACCAAGCTCGAGGGCTCGCATGTAGGCGTGGACACTAAACTAGAAAGCTTAGGCTTGCTTGTACGCGTGGGCACTAAGTTGAAAAACTTAAGCTCGCATGTAGGTGTGAGCTTTAAGCTAAAAAGCTTAGACTCACATGTAGGCATGGGCTCTAAGCGGAAAGGCCTAGGCTCGCATGTTGATGTGGGCACTAAGCTGGAAGGCTTAGGCTCACATGTATTCGATCTCACTTGTAACAATAGGATAGGCCTTGGTCACAACCATGGCTGGGGTCGATCTCGGCCTTGGGCATGGATATGGTCGGCCTTGGCCTCAACCATATCTGGAGTCAGCCTCGAACAATCTATCGTCTTTTGTATCTTGCTTCTTTGCTTCAATCTTGATCTCGTCTTGTGTCAACAACATTGA

Coding sequence (CDS)

ATGCGCATTGTAATTCTTTCTACTTCTCGAGGTATAATGACAAACCGAGAAGCTCGATTACAGGGAATCGACGGAGAAATTTTATGTTATATATGGTTATCCCATATCAGTCGGCCAATCAACAAAGATTTGAAGAATGACCGACCCGTTTTTGAGCCTACGAAAGGAAATTCCATTAGAACATATAACAAAGGCGTGAATGGGAGAATACGGTACCATAAGGAGGAATTCCTCGTTCTTCATGACTACCCGAAGGAGGAGAGAAGAAAAACGGCTCTTCCGAAAGAAGCATCTGGAAATGACTTGTCATGGGCTTATGCGATGAAGCTCGGGAAAATATTTTGTGCTTATGTGGATGGGTCACTTCAATTTCCCAAGATTCGAGAAGGATATTTTCCTACAACAGATGAAAAGTGCTTAGCTTCAAATGAGATGACTTGTGTACTTCCTTTGAGCCCCATATACACCGTCACCTCTTTTGCGACCACTAAAGATATTTGGGAAACCATAAGTCATCTTGATTCTCAGGATGATTATCCACCTTTCTATTGTGGATGGATTGAGCCAATGTTTTCCGCAATTCCAATACGAGAAGCGGATTCCACTTTTATTTATTATAGATTTTGCACCTTCAAAAGTTCCAGGCATATTGAATTACAGAAAGAGATGAATGTGTACTTTTTGTTGCTACAGGGCAAGAAAGAGAGGTGGGGAAGATCAATTTGTGGTGTCCCAATTGTTGACGCATGGGAATTCCAATCCTTCAATCTTGACCCGGATGGCAGTGTCTCGACCCTGATTTGTCCTTCAGCGCTCGCATGTAGTGGCATGGGCTCTAAATATGAAAGTTTAGACTCGCATGTAGGCATGGGAACTAAGATGGAAAGCTTAGGCTTGCACGTAGGCGTGGGCGCCAAGCTCGAGGGCTCGGGCTGGCATGTAGGCGTGGGCACTAAGCTTGAAATCTTAGGCTCGCATGTAGGCGAGGGCACTAAGCTGAAAAGCTTAGGCTTGCATGTAGGTGTGGGCACCAAGCTGAAAAGCTTAGGCTCGCATGTAGGCGTGGGCACCAAGCTCGAGGGCTCGCATGTAGGCGTGGACACTAAACTAGAAAGCTTAGGCTTGCTTGTACGCGTGGGCACTAAGTTGAAAAACTTAAGCTCGCATGTAGGTGTGAGCTTTAAGCTAAAAAGCTTAGACTCACATGTAGGCATGGGCTCTAAGCGGAAAGGCCTAGGCTCGCATGTTGATGTGGGCACTAAGCTGGAAGGCTTAGGCTCACATGTATTCGATCTCACTTGTAACAATAGGATAGGCCTTGGTCACAACCATGGCTGGGGTCGATCTCGGCCTTGGGCATGGATATGGTCGGCCTTGGCCTCAACCATATCTGGAGTCAGCCTCGAACAATCTATCGTCTTTTGTATCTTGCTTCTTTGCTTCAATCTTGATCTCGTCTTGTGTCAACAACATTGA

Protein sequence

MRIVILSTSRGIMTNREARLQGIDGEILCYIWLSHISRPINKDLKNDRPVFEPTKGNSIRTYNKGVNGRIRYHKEEFLVLHDYPKEERRKTALPKEASGNDLSWAYAMKLGKIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTCVLPLSPIYTVTSFATTKDIWETISHLDSQDDYPPFYCGWIEPMFSAIPIREADSTFIYYRFCTFKSSRHIELQKEMNVYFLLLQGKKERWGRSICGVPIVDAWEFQSFNLDPDGSVSTLICPSALACSGMGSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTKLKSLGSHVGVGTKLEGSHVGVDTKLESLGLLVRVGTKLKNLSSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLEGLGSHVFDLTCNNRIGLGHNHGWGRSRPWAWIWSALASTISGVSLEQSIVFCILLLCFNLDLVLCQQH
Homology
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BLAST of Spg002068 vs. NCBI nr
Match: WP_131767158.1 (hypothetical protein [Candidatus Frankia datiscae])

HSP 1 Score: 156.4 bits (394), Expect = 6.4e-34
Identity = 76/95 (80.00%), Postives = 81/95 (85.26%), Query Frame = 0 

Query: 92  ALPKEASGNDLSWAYAMK---LGKIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTCV 151
           ALPKE SGNDLSW YAMK   LGK F AYVDGSLQFPK REG FPT DEKCLASN +TCV
Sbjct: 9   ALPKEVSGNDLSWTYAMKNDLLGKPFFAYVDGSLQFPKTREGDFPTKDEKCLASNGITCV 68

Query: 152 LPLSPIYTVTSFATTKDIWETISHLDSQDDYPPFY 184
           LPLSPIYTVTSFAT KD+++ ISHLDSQ+D PPFY
Sbjct: 69  LPLSPIYTVTSFATAKDLFDYISHLDSQEDSPPFY 103

[Close]
BLAST of Spg002068 vs. NCBI nr
Match: TQE08519.1 (hypothetical protein C1H46_005825 [Malus baccata])

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-20
Identity = 60/82 (73.17%), Postives = 60/82 (73.17%), Query Frame = 0 

Query: 92  ALPKEASGNDLSWAYAMK---LG-KIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTC 151
           ALPKEASGN LSWAYAMK   LG K  CAYVDGSLQFPK REG FPT DEKCLASN MTC
Sbjct: 137 ALPKEASGNYLSWAYAMKNDLLGKKESCAYVDGSLQFPKTREGDFPTKDEKCLASNGMTC 196

Query: 152 VLPLSPIYTVTSFATTKDIWET 170
           VLPLSPIYT          W T
Sbjct: 197 VLPLSPIYTSPLLRLLNIFWIT 218

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BLAST of Spg002068 vs. NCBI nr
Match: EPG49091.1 (hypothetical protein LEP1GSC049_1607 [Leptospira kirschneri serovar Cynopteri str. 3522 CT])

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-09
Identity = 62/150 (41.33%), Postives = 83/150 (55.33%), Query Frame = 0 

Query: 276 GMGSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKS 335
           G  +K ES   +VG  TK+ES   +VG   KLE    +VG  TK+E    +VG  TKL+S
Sbjct: 2   GTLTKLESHSPNVGTLTKLESHSPNVGTLTKLESHSPNVGTLTKIESHSPNVGTLTKLES 61

Query: 336 LGLHVGVGTKLKSLGSHVGVGTKLE--GSHVGVDTKLESLGLLVRVGTKLKNLSSHVGVS 395
              +VG  TKL+S   +VG  TKLE    +VG  TKLES    V   TKL++ S +VG  
Sbjct: 62  HSPNVGTLTKLESHSPNVGTLTKLESHSPNVGTLTKLESHSPNVGTLTKLESHSPNVGTL 121

Query: 396 FKLKSLDSHVGMGSKRKGLGSHVDVGTKLE 424
            KL+S   +VG  +K +    +V   TK+E
Sbjct: 122 TKLESHSPNVGTLTKLESHSPNVGTLTKIE 151

[Close]
BLAST of Spg002068 vs. NCBI nr
Match: EJO68243.1 (hypothetical protein LEP1GSC044_0115 [Leptospira kirschneri serovar Grippotyphosa str. RM52])

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-09
Identity = 62/150 (41.33%), Postives = 83/150 (55.33%), Query Frame = 0 

Query: 276 GMGSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKS 335
           G  +K ES   +VG  TK+ES   +VG   KLE    +VG  TKLE    +VG  TKL+S
Sbjct: 2   GTLTKLESHSPNVGTLTKLESHSPNVGTLTKLESHSPNVGTLTKLESHSPNVGTLTKLES 61

Query: 336 LGLHVGVGTKLKSLGSHVGVGTKLE--GSHVGVDTKLESLGLLVRVGTKLKNLSSHVGVS 395
              +VG  TKL+S   +VG  TKLE    +VG  TKLES    V   TKL++ S +VG  
Sbjct: 62  HSPNVGTLTKLESHSPNVGTLTKLESHSPNVGTLTKLESHSPNVGTLTKLESHSPNVGTL 121

Query: 396 FKLKSLDSHVGMGSKRKGLGSHVDVGTKLE 424
            K++S   +VG  +K +    +V   TK+E
Sbjct: 122 TKIESHSPNVGTLTKLESHSPNVGTLTKIE 151

[Close]
BLAST of Spg002068 vs. NCBI nr
Match: CAG2231943.1 (unnamed protein product [Mytilus edulis])

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-08
Identity = 71/179 (39.66%), Postives = 87/179 (48.60%), Query Frame = 0 

Query: 270 SALACSGMGSKYESL--DSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHV 329
           S +A S +G +Y+S+   SHVG+  K      HVGV  K   +  HVGV  K  I  SHV
Sbjct: 7   SVIAMSHVGVEYKSVIAMSHVGVDYKSVIAMSHVGVDYKSVIAMSHVGVDYKSVIAMSHV 66

Query: 330 GEGTKLKSLGLHVGVGTKLKSLGSHVGVGTK--LEGSHVGVDTKLESLGLLVRVGTKLKN 389
           G   K      HVGV  K     SHVGV  K  +  SHVGVD K  S+  +  VG   K+
Sbjct: 67  GVDYKSVIAMSHVGVDYKSVIAMSHVGVDYKSVIAMSHVGVDYK--SVIAMSHVGVDYKS 126

Query: 390 L--SSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLEGLGSHVFDLTCNNRIGLGH 443
           +   SHVGV +K     SHVG+  K     SHV V  K     SHV  +   N I + H
Sbjct: 127 VIAMSHVGVDYKSVIAMSHVGVDYKSVIAMSHVGVDYKSVIAMSHV-GVEYKNVIAMSH 182

[Close]
BLAST of Spg002068 vs. ExPASy Swiss-Prot
Match: Q4VZK0 (30S ribosomal protein S8, chloroplastic OS=Cucumis sativus OX=3659 GN=rps8 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-08
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1   MRIVILSTSRGIMTNREARLQGIDGEILCYIW 33
           M IVILSTSRGIMT+REARLQGI GEILCYIW
Sbjct: 103 MGIVILSTSRGIMTDREARLQGIGGEILCYIW 134

[Close]
BLAST of Spg002068 vs. ExPASy Swiss-Prot
Match: Q8S8V8 (30S ribosomal protein S8, chloroplastic OS=Atropa belladonna OX=33113 GN=rps8 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.2e-08
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1   MRIVILSTSRGIMTNREARLQGIDGEILCYIW 33
           M IVILSTSRGIMT+REARL+GI GEILCYIW
Sbjct: 103 MGIVILSTSRGIMTDREARLEGIGGEILCYIW 134

[Close]
BLAST of Spg002068 vs. ExPASy Swiss-Prot
Match: A6MM72 (30S ribosomal protein S8, chloroplastic OS=Buxus microphylla OX=153571 GN=rps8 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.2e-08
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1   MRIVILSTSRGIMTNREARLQGIDGEILCYIW 33
           M IVILSTSRGIMT+REARL+GI GEILCYIW
Sbjct: 101 MGIVILSTSRGIMTDREARLEGIGGEILCYIW 132

[Close]
BLAST of Spg002068 vs. ExPASy Swiss-Prot
Match: A6MMF8 (30S ribosomal protein S8, chloroplastic OS=Chloranthus spicatus OX=13006 GN=rps8 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.2e-08
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1   MRIVILSTSRGIMTNREARLQGIDGEILCYIW 33
           M IVILSTSRGIMT+REARL+GI GEILCYIW
Sbjct: 103 MGIVILSTSRGIMTDREARLEGIGGEILCYIW 134

[Close]
BLAST of Spg002068 vs. ExPASy Swiss-Prot
Match: Q49KW3 (30S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps8 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.2e-08
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1   MRIVILSTSRGIMTNREARLQGIDGEILCYIW 33
           M IVILSTSRGIMT+REARL+GI GEILCYIW
Sbjct: 103 MGIVILSTSRGIMTDREARLEGIGGEILCYIW 134

[Close]
BLAST of Spg002068 vs. ExPASy TrEMBL
Match: A0A2N9G8J8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26859 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.2e-32
Identity = 75/95 (78.95%), Postives = 78/95 (82.11%), Query Frame = 0 

Query: 92  ALPKEASGNDLSWAYAMK---LGKIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTCV 151
           ALPKEASGNDLSWAYAMK   LGK  CAYV GSLQF K REG FPT DEKCLA N M CV
Sbjct: 313 ALPKEASGNDLSWAYAMKNDLLGKKSCAYVGGSLQFSKTREGDFPTKDEKCLALNGMPCV 372

Query: 152 LPLSPIYTVTSFATTKDIWETISHLDSQDDYPPFY 184
           LPLSPIYTVTSFAT K+IW+ IS+L SQDD PPFY
Sbjct: 373 LPLSPIYTVTSFATAKEIWDYISNLYSQDDSPPFY 407

[Close]
BLAST of Spg002068 vs. ExPASy TrEMBL
Match: A0A540NBV2 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_005825 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.2e-21
Identity = 60/82 (73.17%), Postives = 60/82 (73.17%), Query Frame = 0 

Query: 92  ALPKEASGNDLSWAYAMK---LG-KIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTC 151
           ALPKEASGN LSWAYAMK   LG K  CAYVDGSLQFPK REG FPT DEKCLASN MTC
Sbjct: 137 ALPKEASGNYLSWAYAMKNDLLGKKESCAYVDGSLQFPKTREGDFPTKDEKCLASNGMTC 196

Query: 152 VLPLSPIYTVTSFATTKDIWET 170
           VLPLSPIYT          W T
Sbjct: 197 VLPLSPIYTSPLLRLLNIFWIT 218

[Close]
BLAST of Spg002068 vs. ExPASy TrEMBL
Match: A7RZA4 (Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g26251 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-08
Identity = 50/157 (31.85%), Postives = 75/157 (47.77%), Query Frame = 0 

Query: 275 SGMGSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLK 334
           S +GSK  +LD H  +G+K  +L  H  +G+K      H   G+K   L  H   G+K  
Sbjct: 36  SPLGSKTSTLDGHSPLGSKTSTLDGHSPLGSKTSTLDGHSPFGSKTSTLDGHSPLGSKTS 95

Query: 335 SLGLHVGVGTKLKSLGSHVGVGTK---LEGSHVGVDTKLESLGLLVRVGTKLKNLSSHVG 394
           +L  H  +G+K  +L  H  +G+K   L+G H    +K  +L     +G+K   L  H  
Sbjct: 96  TLDGHSPLGSKTSTLDGHSPLGSKTSTLDG-HSPFGSKTSTLDGHSPLGSKTSTLDGHSP 155

Query: 395 VSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLEGLGSH 429
           +  K  +LD H  +GSK   L  H  +G+K   L  H
Sbjct: 156 LGSKTSTLDGHSPLGSKTSTLDGHSPLGSKTSTLDGH 191

[Close]
BLAST of Spg002068 vs. ExPASy TrEMBL
Match: A0A250WPR9 (Uncharacterized protein OS=Chlamydomonas eustigma OX=1157962 GN=CEUSTIGMA_g268.t1 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-08
Identity = 51/154 (33.12%), Postives = 75/154 (48.70%), Query Frame = 0 

Query: 278 GSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLG 337
           G++ E    HV  GT+ E   LHV  G + E    HV  GT+ E+   HV +GT+ +   
Sbjct: 446 GTQPEPCSLHVDQGTQPEPCNLHVDQGTQPEPYNLHVDQGTQPELCNHHVDQGTQPEPCS 505

Query: 338 LHVGVGTKLKSLGSHVGVGTKLE--GSHVGVDTKLESLGLLVRVGTKLKNLSSHVGVSFK 397
           LHV  GT+ ++   HV  GT+ E    HV   T+ E   L V  GT+ +  + +V    +
Sbjct: 506 LHVDQGTQPEACNLHVNQGTQPEPYNLHVDQGTQPEPSSLHVDEGTQPEPCNQYVDQGSQ 565

Query: 398 LKSLDSHVGMGSKRKGLGSHVDVGTKLEGLGSHV 430
            +    HV  G++ +    HVD GT+ E    HV
Sbjct: 566 PEPCSIHVDQGTEPEICNHHVDQGTQPEPCYLHV 599

[Close]
BLAST of Spg002068 vs. ExPASy TrEMBL
Match: C3YP24 (Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_86387 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-08
Identity = 60/151 (39.74%), Postives = 72/151 (47.68%), Query Frame = 0 

Query: 286 SHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTK 345
           SHVG+ T M     HVGV   +     HVGV T + I  SHVG  T +     HVGV T 
Sbjct: 6   SHVGVHTYMHIRRSHVGVHTCMHIRRSHVGVHTYMHIRRSHVGVHTCVHIRRSHVGVHTY 65

Query: 346 LKSLGSHVGVGT--KLEGSHVGVDTKLESLGLLVRVGTKLKNLSSHVGVSFKLKSLDSHV 405
           +    SHVGV T   +  SHVGV T +      V V T +    SHVGV   +    SHV
Sbjct: 66  MHIRRSHVGVHTCMHIRRSHVGVHTCMHIRRSHVGVHTCMHIRRSHVGVHTCMHIRRSHV 125

Query: 406 GMGSKRKGLGSHVDVGTKLEGLGSHVFDLTC 435
           G+ +      SHV V T +    SHV   TC
Sbjct: 126 GVHTCMHIRRSHVGVHTCMHIRRSHVGVHTC 156

[Close]
BLAST of Spg002068 vs. TAIR 10
Match: ATCG00770.1 (ribosomal protein S8 )

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-07
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 3   IVILSTSRGIMTNREARLQGIDGEILCYIW 33
           IVILSTS+GIMT+REARL+ I GEILCYIW
Sbjct: 105 IVILSTSQGIMTDREARLKRIGGEILCYIW 134

The following BLAST results are available for this feature:
BLAST of Spg002068 vs. NCBI nr
Match NameE-valueIdentityDescription
WP_131767158.16.4e-3480.00hypothetical protein [Candidatus Frankia datiscae][more]
TQE08519.11.1e-2073.17hypothetical protein C1H46_005825 [Malus baccata][more]
EPG49091.11.4e-0941.33hypothetical protein LEP1GSC049_1607 [Leptospira kirschneri serovar Cynopteri st... [more]
EJO68243.11.4e-0941.33hypothetical protein LEP1GSC044_0115 [Leptospira kirschneri serovar Grippotyphos... [more]
CAG2231943.12.7e-0839.66unnamed protein product [Mytilus edulis][more]
BLAST of Spg002068 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZK03.7e-0890.6330S ribosomal protein S8, chloroplastic OS=Cucumis sativus OX=3659 GN=rps8 PE=3 ... [more]
Q8S8V88.2e-0887.5030S ribosomal protein S8, chloroplastic OS=Atropa belladonna OX=33113 GN=rps8 PE... [more]
A6MM728.2e-0887.5030S ribosomal protein S8, chloroplastic OS=Buxus microphylla OX=153571 GN=rps8 P... [more]
A6MMF88.2e-0887.5030S ribosomal protein S8, chloroplastic OS=Chloranthus spicatus OX=13006 GN=rps8... [more]
Q49KW38.2e-0887.5030S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus O... [more]
BLAST of Spg002068 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2N9G8J82.2e-3278.95Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26859 PE=4 SV=1[more]
A0A540NBV25.2e-2173.17Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_005825 PE=3 SV=1[more]
A7RZA41.3e-0831.85Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g26251 PE=4... [more]
A0A250WPR91.3e-0833.12Uncharacterized protein OS=Chlamydomonas eustigma OX=1157962 GN=CEUSTIGMA_g268.t... [more]
C3YP246.5e-0839.74Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_86387 PE... [more]
BLAST of Spg002068 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00770.13.2e-0783.33ribosomal protein S8 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1490.10coord: 1..32
e-value: 9.2E-12
score: 46.3
IPR000630Ribosomal protein S8PFAMPF00410Ribosomal_S8coord: 3..32
e-value: 4.6E-8
score: 33.1
IPR035987Ribosomal protein S8 superfamilySUPERFAMILY56047Ribosomal protein S8coord: 2..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg002068.1Spg002068.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0016020 membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome