Spg002007 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg002007
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransporter, putative
Locationscaffold8: 34011988 .. 34013349 (+)
RNA-Seq ExpressionSpg002007
SyntenySpg002007
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGTGCTGTCACTAAACAAGAACTTGCCTCTTGCATTTGTTTTGCTAAATTTAATGGCAGGAAGTGCTGGAATAGAAATAGCAGATGTGACGACCATTGATGCTTCTGTGACCCAAAACAGTATAAGCCATCCCTCACTTGCAAGTGACATATTACAACCTCGTCTTAACATGTCACAGATAATTTGTTCTTGTTTTTTGGTTTGTGAGTGGATCAAATCATTTCTATGCGAGGATAAATTGAGTTGGGTCAAGCAAGAAATTGCAAGATCCAGCACTTTCAATTGTAACTAGCACATCTTCTTTGCAGCAGTTCATGTCATTCTTTATAGGCTAATCATAACCATAGAAGTAAAAGGATAAGCATGCTCTAAGTGTTAGGCAGCGAACTAACTTTCTCATTATCTTTGTTATTGATTATCGATCATTCCCACAGGGTGTGTTCGCCCTTCTCAGCATTCCTCCTGGACAGGTGATTTTGGTCGGGATGATAATGAGAGAATCCCTTGTGCACAAATCCGCCAATACCCAGGTAAGAATACCCAGATAATGAGAGAATCCCCTGTGCGCAAGTCCATTTTCAAAAACGCTTCTTGTGCTGGCAAGTTTTCGACCATTTTTCGAAAAGCTTCTTGTTATGGCTTCTGTATATGAGAGTATTTCTATTTTTTTTTTTTTTGCCACAAATTTCTTTATGGCGTTTGGTGAAAACATATATAATAGGAAAGTTTTGGAATAGGCTTATTGTGATTCGGTTTTGTTGTCTGTTGCTGCTCATTCAGTTCACGGAATTGACGGGAAATATAAATATTGAATCTGTATGATCTAAAGTCGCTTGTTCGCATGTAATTTTAAATGTGAGTTCATTTGCTGGTTTAATTTCGTCGTGAATTTAGGAATTCACTTGTATTTCTTAGTCTATTTTTCCCTTTCGGTTCAATGGAATTGGGTTTAATTTTTAAGAGCTAACTCTTTTCTTGGCATTTAATCTAAACTCTTTTTGTGATTGCGTTTCTGTCAACCGCTCTTTGGTTTAATCTTTTGGAAGTTTACCTCTTAACCTATGTTCTTGTACTTCTTCCTTGTATTTTGGGCATTCTTTCATGAGAACACTCCTATGGAGCAATTTTTATTTTATTTTGTGCTTAAGGGTGTGTTCCTTCTAGCCATTTGCATGCTTCATTCTCATGTCATGGAGTTCTGTATTTATGTTATTTGTCCTTTATGTAAGGTCAATTCTATTGGCAATGTTATAGTCATTTGGCTTATGCTCGTACCTTTTTGTTTATTTCCATTGCAGATTATAGATTTACACAGCAAGAGCTTCCTACTTGCAAACCAATTTTAACACTAGAATGG

mRNA sequence

ATGCTTGTGCTGTCACTAAACAAGAACTTGCCTCTTGCATTTGTTTTGCTAAATTTAATGGCAGGAAGTGCTGGAATAGAAATAGCAGATGTGACGACCATTGATGCTTCTGTGACCCAAAACAGTATAAGCCATCCCTCACTTGCAAGGTGTGTTCGCCCTTCTCAGCATTCCTCCTGGACAGGTGATTTTGGTCGGGATGATAATGAGAGAATCCCTTGTGCACAAATCCGCCAATACCCAGATTATAGATTTACACAGCAAGAGCTTCCTACTTGCAAACCAATTTTAACACTAGAATGG

Coding sequence (CDS)

ATGCTTGTGCTGTCACTAAACAAGAACTTGCCTCTTGCATTTGTTTTGCTAAATTTAATGGCAGGAAGTGCTGGAATAGAAATAGCAGATGTGACGACCATTGATGCTTCTGTGACCCAAAACAGTATAAGCCATCCCTCACTTGCAAGGTGTGTTCGCCCTTCTCAGCATTCCTCCTGGACAGGTGATTTTGGTCGGGATGATAATGAGAGAATCCCTTGTGCACAAATCCGCCAATACCCAGATTATAGATTTACACAGCAAGAGCTTCCTACTTGCAAACCAATTTTAACACTAGAATGG

Protein sequence

MLVLSLNKNLPLAFVLLNLMAGSAGIEIADVTTIDASVTQNSISHPSLARCVRPSQHSSWTGDFGRDDNERIPCAQIRQYPDYRFTQQELPTCKPILTLEW
Homology
[Close]
BLAST of Spg002007 vs. NCBI nr
Match: XP_022153452.1 (probable folate-biopterin transporter 3 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-09
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 0 

Query: 1   MLVLSLNKNLPLAFVLLNLMAGSAGIEIADVTTIDASVTQNSISHPSLA 50
           ML+LSL KNLPLA VLLNLMAGSAGI IADV TIDA VTQNSISHPSLA
Sbjct: 164 MLLLSLYKNLPLALVLLNLMAGSAGIAIADV-TIDACVTQNSISHPSLA 211

[Close]
BLAST of Spg002007 vs. NCBI nr
Match: KDP41941.1 (hypothetical protein JCGZ_26959 [Jatropha curcas])

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-08
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MLVLSLNKNLPLAFVLLNLMAGSAGIEIADVTTIDASVTQNSISHPSLA 50
           MLVLSL KNL LAF LL+LMAGSAGI IADV TIDA VTQNSISHPSLA
Sbjct: 94  MLVLSLKKNLHLAFALLSLMAGSAGIAIADV-TIDACVTQNSISHPSLA 141

[Close]
BLAST of Spg002007 vs. NCBI nr
Match: XP_012067460.1 (probable folate-biopterin transporter 3 [Jatropha curcas])

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-08
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MLVLSLNKNLPLAFVLLNLMAGSAGIEIADVTTIDASVTQNSISHPSLA 50
           MLVLSL KNL LAF LL+LMAGSAGI IADV TIDA VTQNSISHPSLA
Sbjct: 121 MLVLSLKKNLHLAFALLSLMAGSAGIAIADV-TIDACVTQNSISHPSLA 168

[Close]
BLAST of Spg002007 vs. NCBI nr
Match: XP_021610406.1 (probable folate-biopterin transporter 3 isoform X1 [Manihot esculenta] >OAY52669.1 hypothetical protein MANES_04G101200v8 [Manihot esculenta])

HSP 1 Score: 67.4 bits (163), Expect = 8.1e-08
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MLVLSLNKNLPLAFVLLNLMAGSAGIEIADVTTIDASVTQNSISHPSLA 50
           MLV+SL KNL LAF +L+LMAGSAGI IADV TIDA VTQNSISHPSLA
Sbjct: 120 MLVVSLQKNLHLAFAMLSLMAGSAGIAIADV-TIDACVTQNSISHPSLA 167

[Close]
BLAST of Spg002007 vs. NCBI nr
Match: KAG8656160.1 (hypothetical protein MANES_04G101200v8 [Manihot esculenta])

HSP 1 Score: 67.4 bits (163), Expect = 8.1e-08
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1  MLVLSLNKNLPLAFVLLNLMAGSAGIEIADVTTIDASVTQNSISHPSLA 50
          MLV+SL KNL LAF +L+LMAGSAGI IADV TIDA VTQNSISHPSLA
Sbjct: 26 MLVVSLQKNLHLAFAMLSLMAGSAGIAIADV-TIDACVTQNSISHPSLA 73

[Close]
BLAST of Spg002007 vs. ExPASy Swiss-Prot
Match: Q9SQN2 (Probable folate-biopterin transporter 3 OS=Arabidopsis thaliana OX=3702 GN=At1g79710 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.9e-06
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 1   MLVLSLNKNLPLAFVLLNLMAGSAGIEIADVTTIDASVTQNSISHPSLA 50
           M+VL L+ NL LA  L  L+AGSAG+ IADV TIDA VTQ SISHP+LA
Sbjct: 133 MMVLWLHTNLHLALALSCLVAGSAGVAIADV-TIDACVTQCSISHPTLA 180

[Close]
BLAST of Spg002007 vs. ExPASy TrEMBL
Match: A0A6J1DIY1 (probable folate-biopterin transporter 3 OS=Momordica charantia OX=3673 GN=LOC111020958 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 0 

Query: 1   MLVLSLNKNLPLAFVLLNLMAGSAGIEIADVTTIDASVTQNSISHPSLA 50
           ML+LSL KNLPLA VLLNLMAGSAGI IADV TIDA VTQNSISHPSLA
Sbjct: 164 MLLLSLYKNLPLALVLLNLMAGSAGIAIADV-TIDACVTQNSISHPSLA 211

[Close]
BLAST of Spg002007 vs. ExPASy TrEMBL
Match: A0A067L0F6 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26959 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-08
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MLVLSLNKNLPLAFVLLNLMAGSAGIEIADVTTIDASVTQNSISHPSLA 50
           MLVLSL KNL LAF LL+LMAGSAGI IADV TIDA VTQNSISHPSLA
Sbjct: 94  MLVLSLKKNLHLAFALLSLMAGSAGIAIADV-TIDACVTQNSISHPSLA 141

[Close]
BLAST of Spg002007 vs. ExPASy TrEMBL
Match: A0A2C9W2L6 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G101200 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.9e-08
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MLVLSLNKNLPLAFVLLNLMAGSAGIEIADVTTIDASVTQNSISHPSLA 50
           MLV+SL KNL LAF +L+LMAGSAGI IADV TIDA VTQNSISHPSLA
Sbjct: 120 MLVVSLQKNLHLAFAMLSLMAGSAGIAIADV-TIDACVTQNSISHPSLA 167

[Close]
BLAST of Spg002007 vs. ExPASy TrEMBL
Match: A0A2C9W3R1 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G101200 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.9e-08
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1  MLVLSLNKNLPLAFVLLNLMAGSAGIEIADVTTIDASVTQNSISHPSLA 50
          MLV+SL KNL LAF +L+LMAGSAGI IADV TIDA VTQNSISHPSLA
Sbjct: 19 MLVVSLQKNLHLAFAMLSLMAGSAGIAIADV-TIDACVTQNSISHPSLA 66

[Close]
BLAST of Spg002007 vs. ExPASy TrEMBL
Match: B9RGP6 (Transporter, putative OS=Ricinus communis OX=3988 GN=RCOM_1442510 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.7e-08
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MLVLSLNKNLPLAFVLLNLMAGSAGIEIADVTTIDASVTQNSISHPSLA 50
           ML+LS+ KNL LAF LL+LMAGSAG+ IADV TIDA VTQNSISHPSLA
Sbjct: 103 MLMLSVQKNLHLAFALLSLMAGSAGVAIADV-TIDACVTQNSISHPSLA 150

[Close]
BLAST of Spg002007 vs. TAIR 10
Match: AT1G79710.1 (Major facilitator superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 5.6e-07
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 1   MLVLSLNKNLPLAFVLLNLMAGSAGIEIADVTTIDASVTQNSISHPSLA 50
           M+VL L+ NL LA  L  L+AGSAG+ IADV TIDA VTQ SISHP+LA
Sbjct: 133 MMVLWLHTNLHLALALSCLVAGSAGVAIADV-TIDACVTQCSISHPTLA 180

The following BLAST results are available for this feature:
BLAST of Spg002007 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153452.13.3e-0987.76probable folate-biopterin transporter 3 [Momordica charantia][more]
KDP41941.12.1e-0885.71hypothetical protein JCGZ_26959 [Jatropha curcas][more]
XP_012067460.12.1e-0885.71probable folate-biopterin transporter 3 [Jatropha curcas][more]
XP_021610406.18.1e-0881.63probable folate-biopterin transporter 3 isoform X1 [Manihot esculenta] >OAY52669... [more]
KAG8656160.18.1e-0881.63hypothetical protein MANES_04G101200v8 [Manihot esculenta][more]
BLAST of Spg002007 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SQN27.9e-0667.35Probable folate-biopterin transporter 3 OS=Arabidopsis thaliana OX=3702 GN=At1g7... [more]
BLAST of Spg002007 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DIY11.6e-0987.76probable folate-biopterin transporter 3 OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A067L0F61.0e-0885.71Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26959 PE=3 SV=1[more]
A0A2C9W2L63.9e-0881.63Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G101200 PE=3 SV=... [more]
A0A2C9W3R13.9e-0881.63Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G101200 PE=3 SV=... [more]
B9RGP66.7e-0879.59Transporter, putative OS=Ricinus communis OX=3988 GN=RCOM_1442510 PE=3 SV=1[more]
BLAST of Spg002007 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G79710.15.6e-0767.35Major facilitator superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg002007.1Spg002007.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006817 phosphate ion transport
biological_process GO:0050896 response to stimulus
cellular_component GO:0016021 integral component of membrane