Spg002000 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg002000
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSerine/threonine-protein phosphatase 7 long form-like protein isoform X1
Locationscaffold8: 31182780 .. 31183829 (+)
RNA-Seq ExpressionSpg002000
SyntenySpg002000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGTACATGTCTTGCATGGTTGTACAGAGAATTATGTCGATCTAGTAGTGCCAGTGCATTAGAGATAACCGGTCCACTAATACTACTACAAGTTTGGGCGTTCGATCGGTTTTTTATTACCGCACCACTACACGACTTACCAACCCTTGATCATTATGCTGGACGACCACTTAGTTCTCGGTATGTTAAATTTACGTATAATTTAAATTTAACATAAATTTGTATAATGATATGTTTTAATTATATTATATAATGTGCAGATGGAACGAAATTTTGGCTGCATCTGAGAAAAGTACAAATATGTTGATTATGTATTGTATTACATTTGATTGTCCTATGCCCAACCAGGTAAAAAAGTAATCAATTTTTTCTCAAATTTTAAAAAATATATATTAACTTTAATTTCATTTATTAAATTTATTGTTTTATAAATTTCAGATCACATGGACACCATATACACCTGATATTATGGCCTTACAATCGGACTACTGCCATAATGGGCAGGAGATTTGGTTGACTGTAAGCCCTCTCATATGTTTTCATATTGTAGAGTGACATTACCCAAATCGAGTACTGAGACAATTTGAAATGTGACAAATGGTGTCGCCATATTGTGATACAGGCATGGAGTTACATCAGTTGGACTTGCGAGGTAAGCACGATCACGATTGACGACAACATCATGCAACATTTATATCACTGTGGCATGCACGTTGTGATCATTGTGTCTTGGGCAACATAGTAGACATGCCAACTGTGTCCGATGACTACTTACACTGGTATGATTCAATCACAAGGAGGTATATCACGTGTGAGGGTGCTTATTATGCTTGCACGGTAAATAGACATTCCACAGCAGAACGAGGATGAAGAACCTCCTATAGTTGATGATGACACTTCAGCTCTTCCTGTACAGTCACTGACAGATCAGATAGACATTGCTTCAAGTTCTGGTCATGGTGACATAACTCAACAAGATATTGATGATGTGATTCATCATCAATCACACATGGAAGTGCCTCAACCTCGTCGTGGAGCTCGTTAG

mRNA sequence

ATGGGCAGTACATGTCTTGCATGGTTGTACAGAGAATTATGTCGATCTAGTAGTGCCAGTGCATTAGAGATAACCGGTCCACTAATACTACTACAAGTTTGGGCGTTCGATCGGTTTTTTATTACCGCACCACTACACGACTTACCAACCCTTGATCATTATGCTGGACGACCACTTAGTTCTCGATGGAACGAAATTTTGGCTGCATCTGAGAAAAGTACAAATATGTTGATTATGTATTGTATTACATTTGATTGTCCTATGCCCAACCAGATCACATGGACACCATATACACCTGATATTATGGCCTTACAATCGGACTACTGCCATAATGGGCAGGAGATTTGGTTGACTTTGGACTTGCGAGACATTCCACAGCAGAACGAGGATGAAGAACCTCCTATAGTTGATGATGACACTTCAGCTCTTCCTGTACAGTCACTGACAGATCAGATAGACATTGCTTCAAGTTCTGGTCATGGTGACATAACTCAACAAGATATTGATGATGTGATTCATCATCAATCACACATGGAAGTGCCTCAACCTCGTCGTGGAGCTCGTTAG

Coding sequence (CDS)

ATGGGCAGTACATGTCTTGCATGGTTGTACAGAGAATTATGTCGATCTAGTAGTGCCAGTGCATTAGAGATAACCGGTCCACTAATACTACTACAAGTTTGGGCGTTCGATCGGTTTTTTATTACCGCACCACTACACGACTTACCAACCCTTGATCATTATGCTGGACGACCACTTAGTTCTCGATGGAACGAAATTTTGGCTGCATCTGAGAAAAGTACAAATATGTTGATTATGTATTGTATTACATTTGATTGTCCTATGCCCAACCAGATCACATGGACACCATATACACCTGATATTATGGCCTTACAATCGGACTACTGCCATAATGGGCAGGAGATTTGGTTGACTTTGGACTTGCGAGACATTCCACAGCAGAACGAGGATGAAGAACCTCCTATAGTTGATGATGACACTTCAGCTCTTCCTGTACAGTCACTGACAGATCAGATAGACATTGCTTCAAGTTCTGGTCATGGTGACATAACTCAACAAGATATTGATGATGTGATTCATCATCAATCACACATGGAAGTGCCTCAACCTCGTCGTGGAGCTCGTTAG

Protein sequence

MGSTCLAWLYRELCRSSSASALEITGPLILLQVWAFDRFFITAPLHDLPTLDHYAGRPLSSRWNEILAASEKSTNMLIMYCITFDCPMPNQITWTPYTPDIMALQSDYCHNGQEIWLTLDLRDIPQQNEDEEPPIVDDDTSALPVQSLTDQIDIASSSGHGDITQQDIDDVIHHQSHMEVPQPRRGAR
Homology
BLAST of Spg002000 vs. NCBI nr
Match: XP_011656076.1 (serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sativus] >XP_031740838.1 serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sativus] >XP_031740839.1 serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sativus] >KAE8648996.1 hypothetical protein Csa_009127 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 8.2e-30
Identity = 69/115 (60.00%), Postives = 80/115 (69.57%), Query Frame = 0

Query: 2   GSTCLAWLYRELCRSSSASALEITGPLILLQVWAFDRFFITAPLHDLPTLDHYAGRPLSS 61
           GS CLAWLYRELCR+S+A +LEI GPL+LLQ+WA+DRF I AP      L     RPL  
Sbjct: 210 GSACLAWLYRELCRASNAQSLEIAGPLMLLQMWAYDRFSIVAP---QVALQAPVNRPLGF 269

Query: 62  RWNEILAASEKSTNMLIMYCITFDCPMPNQITWTPYTPDIMALQSDYCHNGQEIW 117
           RW+ +L  SE+S NML+ Y   FD  +  QI WTPYTPDIMAL  D CHNGQ IW
Sbjct: 270 RWSGVLPTSEQSGNMLLTYRQIFDRLIHTQINWTPYTPDIMALLPDRCHNGQLIW 321

BLAST of Spg002000 vs. NCBI nr
Match: XP_031740840.1 (serine/threonine-protein phosphatase 7 long form homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 8.2e-30
Identity = 69/115 (60.00%), Postives = 80/115 (69.57%), Query Frame = 0

Query: 2   GSTCLAWLYRELCRSSSASALEITGPLILLQVWAFDRFFITAPLHDLPTLDHYAGRPLSS 61
           GS CLAWLYRELCR+S+A +LEI GPL+LLQ+WA+DRF I AP      L     RPL  
Sbjct: 143 GSACLAWLYRELCRASNAQSLEIAGPLMLLQMWAYDRFSIVAP---QVALQAPVNRPLGF 202

Query: 62  RWNEILAASEKSTNMLIMYCITFDCPMPNQITWTPYTPDIMALQSDYCHNGQEIW 117
           RW+ +L  SE+S NML+ Y   FD  +  QI WTPYTPDIMAL  D CHNGQ IW
Sbjct: 203 RWSGVLPTSEQSGNMLLTYRQIFDRLIHTQINWTPYTPDIMALLPDRCHNGQLIW 254

BLAST of Spg002000 vs. NCBI nr
Match: TYK03303.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa] >TYK12342.1 serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-29
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 0

Query: 2   GSTCLAWLYRELCRSSSASALEITGPLILLQVWAFDRFFITAPLHDLPTLDHYAGRPLSS 61
           G+  LAWLYRELCR+S+A +LEI GPL+LLQVWA+DRF I AP     TL H  GRPLS 
Sbjct: 292 GAATLAWLYRELCRASNAQSLEIAGPLMLLQVWAYDRFSIIAPQR---TLQHSDGRPLSF 351

Query: 62  RWNEILAASEKSTNMLIMYCITFDCPMPNQITWTPYTPDIMALQSDYCHNGQEIW 117
           RW+ + AASE+S NML++Y  TFD    +QI WTPYTPDIMA     C +GQ +W
Sbjct: 352 RWSGVQAASEQSGNMLLIYRWTFDRLSRSQINWTPYTPDIMASLPVRCQSGQAVW 403

BLAST of Spg002000 vs. NCBI nr
Match: KAA0054305.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-29
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 0

Query: 2   GSTCLAWLYRELCRSSSASALEITGPLILLQVWAFDRFFITAPLHDLPTLDHYAGRPLSS 61
           G+  LAWLYRELCR+S+A +LEI GPL+LLQVWA+DRF I AP     TL H  GRPLS 
Sbjct: 188 GAATLAWLYRELCRASNAQSLEIAGPLMLLQVWAYDRFSIIAPQR---TLQHSDGRPLSF 247

Query: 62  RWNEILAASEKSTNMLIMYCITFDCPMPNQITWTPYTPDIMALQSDYCHNGQEIW 117
           RW+ + AASE+S NML++Y  TFD    +QI WTPYTPDIMA     C +GQ +W
Sbjct: 248 RWSGVQAASEQSGNMLLIYRWTFDPLSRSQINWTPYTPDIMASLPVRCQSGQAVW 299

BLAST of Spg002000 vs. NCBI nr
Match: TYK25184.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-29
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 0

Query: 2   GSTCLAWLYRELCRSSSASALEITGPLILLQVWAFDRFFITAPLHDLPTLDHYAGRPLSS 61
           G+  LAWLYRELCR+S+A +LEI GPL+LLQVWA+DRF I AP     TL H  GRPLS 
Sbjct: 258 GAATLAWLYRELCRASNAQSLEIAGPLMLLQVWAYDRFSIIAPQR---TLQHSDGRPLSF 317

Query: 62  RWNEILAASEKSTNMLIMYCITFDCPMPNQITWTPYTPDIMALQSDYCHNGQEIW 117
           RW+ + AASE+S NML++Y  TFD    +QI WTPYTPDIMA     C +GQ +W
Sbjct: 318 RWSGVQAASEQSGNMLLIYRWTFDRLSRSQINWTPYTPDIMASLPVRCQSGQAVW 369

BLAST of Spg002000 vs. ExPASy Swiss-Prot
Match: Q9LNG5 (Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana OX=3702 GN=MAIL3 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.3e-17
Identity = 49/125 (39.20%), Postives = 65/125 (52.00%), Query Frame = 0

Query: 2   GSTCLAWLYRELCRSSSASALEITGPLILLQVWAFDRFFITAP--LHD-----LPTLDHY 61
           GS  LA LYRELCR+S  +   I GPL+LLQ+WA++R  +  P  L D     +  +D  
Sbjct: 222 GSATLALLYRELCRASKRTVSTICGPLVLLQLWAWERLHVGRPGRLKDVGASYMDGIDGP 281

Query: 62  AGRPLSSRWNEILAASEKSTNMLIMYCITFDCPMPNQITWTPYTPDIMALQSDYCHNGQE 120
              PL  RW   L+  E     L  Y   FD     Q+ W PYTPD++A     C +G+ 
Sbjct: 282 LPDPLGCRWRASLSHKENPRGGLDFYRDQFDQQKDEQVIWQPYTPDLLAKIPLICVSGEN 341

BLAST of Spg002000 vs. ExPASy TrEMBL
Match: A0A5A7TSW1 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00240 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.2e-30
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 0

Query: 2   GSTCLAWLYRELCRSSSASALEITGPLILLQVWAFDRFFITAPLHDLPTLDHYAGRPLSS 61
           G+  LAWLYRELCR+S+A +LEI GPL+LLQVWA+DRF I AP     TL H  GRPLS 
Sbjct: 210 GAATLAWLYRELCRASNAQSLEIAGPLMLLQVWAYDRFSIIAPQR---TLQHSDGRPLSF 269

Query: 62  RWNEILAASEKSTNMLIMYCITFDCPMPNQITWTPYTPDIMALQSDYCHNGQEIW 117
           RW+ + AASE+S NML++Y  TFD    +QI WTPYTPDIMA     C +GQ +W
Sbjct: 270 RWSGVQAASEQSGNMLLIYRWTFDRLSRSQINWTPYTPDIMASLPVRCQSGQAVW 321

BLAST of Spg002000 vs. ExPASy TrEMBL
Match: A0A5D3BUF5 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001440 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.2e-30
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 0

Query: 2   GSTCLAWLYRELCRSSSASALEITGPLILLQVWAFDRFFITAPLHDLPTLDHYAGRPLSS 61
           G+  LAWLYRELCR+S+A +LEI GPL+LLQVWA+DRF I AP     TL H  GRPLS 
Sbjct: 292 GAATLAWLYRELCRASNAQSLEIAGPLMLLQVWAYDRFSIIAPQR---TLQHSDGRPLSF 351

Query: 62  RWNEILAASEKSTNMLIMYCITFDCPMPNQITWTPYTPDIMALQSDYCHNGQEIW 117
           RW+ + AASE+S NML++Y  TFD    +QI WTPYTPDIMA     C +GQ +W
Sbjct: 352 RWSGVQAASEQSGNMLLIYRWTFDRLSRSQINWTPYTPDIMASLPVRCQSGQAVW 403

BLAST of Spg002000 vs. ExPASy TrEMBL
Match: A0A5A7UKU7 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00240 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.2e-30
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 0

Query: 2   GSTCLAWLYRELCRSSSASALEITGPLILLQVWAFDRFFITAPLHDLPTLDHYAGRPLSS 61
           G+  LAWLYRELCR+S+A +LEI GPL+LLQVWA+DRF I AP     TL H  GRPLS 
Sbjct: 188 GAATLAWLYRELCRASNAQSLEIAGPLMLLQVWAYDRFSIIAPQR---TLQHSDGRPLSF 247

Query: 62  RWNEILAASEKSTNMLIMYCITFDCPMPNQITWTPYTPDIMALQSDYCHNGQEIW 117
           RW+ + AASE+S NML++Y  TFD    +QI WTPYTPDIMA     C +GQ +W
Sbjct: 248 RWSGVQAASEQSGNMLLIYRWTFDPLSRSQINWTPYTPDIMASLPVRCQSGQAVW 299

BLAST of Spg002000 vs. ExPASy TrEMBL
Match: A0A5D3DNL9 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003100 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.2e-30
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 0

Query: 2   GSTCLAWLYRELCRSSSASALEITGPLILLQVWAFDRFFITAPLHDLPTLDHYAGRPLSS 61
           G+  LAWLYRELCR+S+A +LEI GPL+LLQVWA+DRF I AP     TL H  GRPLS 
Sbjct: 258 GAATLAWLYRELCRASNAQSLEIAGPLMLLQVWAYDRFSIIAPQR---TLQHSDGRPLSF 317

Query: 62  RWNEILAASEKSTNMLIMYCITFDCPMPNQITWTPYTPDIMALQSDYCHNGQEIW 117
           RW+ + AASE+S NML++Y  TFD    +QI WTPYTPDIMA     C +GQ +W
Sbjct: 318 RWSGVQAASEQSGNMLLIYRWTFDRLSRSQINWTPYTPDIMASLPVRCQSGQAVW 369

BLAST of Spg002000 vs. ExPASy TrEMBL
Match: A0A6J1DE57 (serine/threonine-protein phosphatase 7 long form homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019957 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 6.8e-30
Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 0

Query: 2   GSTCLAWLYRELCRSSSASALEITGPLILLQVWAFDRFFITAPLHDLPTLDHYAGRPLSS 61
           GS CLAWLYRELCR+S   ALEI GPLILLQVWA+DRF   AP   L T + Y G PLS+
Sbjct: 525 GSACLAWLYRELCRASQIDALEIAGPLILLQVWAWDRFPAIAPQRKLTTPNEYVGCPLSA 584

Query: 62  RWNEILAASEKSTNMLIMYCITFDCPMPNQITWTPYTPDIMALQSDYCHNGQEIWLTL 120
           RW+  L  ++ ST++L  Y  TFD    N+I W PY  +IM++  +YC NGQ++WLT+
Sbjct: 585 RWSGSLTVTKVSTHVLSQYRYTFDRLSRNEIVWIPYMHEIMSILPEYCLNGQDVWLTI 642

BLAST of Spg002000 vs. TAIR 10
Match: AT1G48120.1 (hydrolases;protein serine/threonine phosphatases )

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-18
Identity = 49/125 (39.20%), Postives = 65/125 (52.00%), Query Frame = 0

Query: 2   GSTCLAWLYRELCRSSSASALEITGPLILLQVWAFDRFFITAP--LHD-----LPTLDHY 61
           GS  LA LYRELCR+S  +   I GPL+LLQ+WA++R  +  P  L D     +  +D  
Sbjct: 222 GSATLALLYRELCRASKRTVSTICGPLVLLQLWAWERLHVGRPGRLKDVGASYMDGIDGP 281

Query: 62  AGRPLSSRWNEILAASEKSTNMLIMYCITFDCPMPNQITWTPYTPDIMALQSDYCHNGQE 120
              PL  RW   L+  E     L  Y   FD     Q+ W PYTPD++A     C +G+ 
Sbjct: 282 LPDPLGCRWRASLSHKENPRGGLDFYRDQFDQQKDEQVIWQPYTPDLLAKIPLICVSGEN 341

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011656076.18.2e-3060.00serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sat... [more]
XP_031740840.18.2e-3060.00serine/threonine-protein phosphatase 7 long form homolog isoform X2 [Cucumis sat... [more]
TYK03303.11.1e-2960.00serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
KAA0054305.11.1e-2960.00serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
TYK25184.11.1e-2960.00serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
Match NameE-valueIdentityDescription
Q9LNG58.3e-1739.20Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana... [more]
Match NameE-valueIdentityDescription
A0A5A7TSW15.2e-3060.00Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A5D3BUF55.2e-3060.00Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A5A7UKU75.2e-3060.00Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A5D3DNL95.2e-3060.00Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A6J1DE576.8e-3055.08serine/threonine-protein phosphatase 7 long form homolog isoform X1 OS=Momordica... [more]
Match NameE-valueIdentityDescription
AT1G48120.15.9e-1839.20hydrolases;protein serine/threonine phosphatases [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019557Aminotransferase-like, plant mobile domainPFAMPF10536PMDcoord: 2..119
e-value: 4.0E-15
score: 55.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..188

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg002000.1Spg002000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048507 meristem development