Spg001966 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTCTTCTTCCCACTTCTCTCTGTTCCATCTCTATCTCTCTCTCTCTCTCCTTCTCTGAAACCCCATTTTCAATCCTTCGTTTTCCGCCCCTATGATCGGAGTGGCATCAAGTTAACAGAGAAAACAAGCAAAATCATCAATGGGTTCCTGTGTTTCAATCCATAGAAATTCCGATTCCGCCATGAAATTCAGACTCTCAATTGGGTCTAAAACCAACGGAATGGCAATTCCGCCGTCACCCATCAAAGATAACAACACTCCGATCAACGCCGGTGGCGTCTTCGTCAAATCTCAGAGGTCCCCTTCTCACTTGGGTATTGCCCCTTTTCCTCCTTCTTCTTCTTCTTGAGTTTGTACAAGTGTAATCGGCTTTGTTTTGTTCTTTCTGTTTATTAGTGTGTTGTTGAATTGTTTTTGTTGAGTGATGAATTTTGATGCTTTAGAATCAGTGCTTAGAAAGATTTCGCTTCTTTTTACCCCACTGATCTTCACAAGCAAAGTCATGTGCGATCTAAAGTGTTTGGTTCTTGCGTGTCCCTCTGATTTGACTTTGATTGGTTTCACATCTAAGCCTGTTTCCTTTTCTAATTGAATATCTTATAGAATCATTGCCTTTTGGACATATTGTTTAATTGGAATGATAAAGTAAATCTAGGTCCCATTTGTATTATATTATTTTTTAAAACTGACAAACCGATCTCTTTTCTAATGTAAATCTTCAGAGATTGGTGAACAGGAGAAGGATTTTTTCCCCTTTCTTCTTTTGATTATTATTTTTCATTAAAATGAGAGAAACCCCAGATTTCCTTTCTGTCCCTTGTGGTTTGAGGATCAAATAACTGTTCTGTGTACAAAGATGGAGAAATCCTTCCTTTCTTCATTGGAAGCTCTGTTTCCAGTGAAGTTATATGTTGTTTTTAGTGGATTGTGCTTAATTATTTTTTGAGTTCAATGACATTTAGGGTGAGGATTCGAACCTCTAAACCTTTTGATTGAGGATATATGTTTTAGCTAGTTGAATTATGCTCACGCTGTCGTTGACAAATTGTAATCAATCGATAAAAAGAAACAAAATGTCTAAGAAAGCTTTGTGACTTCAGTTTACTCACTTTTGATGTGTTGATTCATTTAATAGTTATGGGATTTCCTCATAAAGAAAAAATAGTTGAGAATTTTAGTCATATTGTAGTGATAACACCTAATAATTTCTCGAGTGTTTCTCATGATTTGTTGCATACTGGCGTTGGATTATATATATATATATATGTATCAGTGGTAGTATTATCCCTCCTCTGATAAGGATGTCATGAGTTTCTCTTCATCTCACATGAAGCTTGCCAGGGTTCATGGAAAGTGAAGAATGCTAACTCTAGGAGTTTTCATTTATTTTGTTTTTCACCAAAAGGATGGAACTCGGGAACTCAAAAAACTGCTCCCACACATTTGAAGTCCTTATCAACAGGACCAACTCTTGGGGCTAATTTATTACTATTCCTAAGATGCCAGTTTGTTGCAAGTTTAGTTTGGTCTTTCCTATTTGGTTTATGGGGCAATGGGGTTTGTCCCTCTTAAGGATTCCATTACCTTGTATAGTCTTTATTAGAGAAAGGAGAAAAGGATGACAGTAAAACTTTTCTTCCTAGAATGGCAGAGCAGAAGCACTTTCTGTTCTAGGACTTCTTTAACAACTCACAAGGATATGGTGTAAGTGTAACTATATTCCATTGAGATCTTCACACATTTAGGCAGGCAGTCCCGTTTGATAACTATTTGGTTTTTGAAAATTAAGCTGGTAAAAGCTACTTTTGCCTCTAAGTTTCTTTCTTTTGTTTTCTACATTTAAAAGTATTTTCAAAATCCAAGCCAAATTTTGAAAACTAAACAAGTATTTCTGTTTTGGAAATTTGGCTAAGAATTAAACAGAAAACTAAAAGTGGAGTTGTTATCAACAGGGCCTTATTTACTCAATTCTTAAGTTCCAAATTTTACTGTTATGATGTGGTGACCCAACCCATTATGATCAAACTTAAAAAGTCCTTGTTGTGTTAACTTTGAGATTGTGGCTTTCACAGGCTGCTGTATTAGAACTCTTTTAGCTTATATTATCATTAGTGGATTCTTTCTTTTATCCCCATGACTTTCTTGAAAGAGTTTTTCACCCTAGTCCATGTAATATTTTCTGTTTTGCAATCTATCTCGCCTATTTTCACATCGACTTTGAAATGGCTGTTCTATGAAAGAAGCAAGTTGATAATGGAGCCCTCCTGTTTTCATAGGTAGCAAAGATGAAGCGTTTTTTGATTCCAGAGGCTGGTTGGATTCAGATTGTGAAGATGATTTCTACAGTGTCAATGGTGGTAAGTAGCAGACATTTGAATTCTTCTATGCTATTTGCTTTTTTCATCTCCTCTCCTGAAGTATTCCGTTCCAATGGCTGCAGATTTCACCCCTTCACGAGGGAACACTCCGGTACACCACAGCTTCGCCTCCGGTACTCCTCGGATCAACCAAGTTCATGTCATTGACGATCGAACTCCGATCGCCCTGCCCGAACCATCGCCAACAGGAAAGAAGAAGCTGGCTGAACTTTTCAGGGAGAGCTCTAGAAATGGCACTGACATACAAGCCAAACCAACTCTAAACGAACTCGCCCTGCAGTCGAATCCCGAAACGCCGTACATCTCAGGAACAAACTCTGTATGCAGCAGCGAGAGGACGACAAATGGAGATGCCTGGATGGAGAAGGAGAGGCCATATGGATCTGTACAATGCTGCCTTCCAAGCTTGGGATCATGTCGTAGCTTCGGCGACCGGAGGAAGAAGGCGAGTCCCGCCATAGCTGTATAAAACAAACGTCAATCGAACACGCCATAAGCCATAAATTCCCTCTGATTCTGCCTTTGTGAGACCCCAAACCTTATGGAGCTCACAATTGTTCAGAAATGTGTAAAGTTCTGAAATATCAGATACAGATGCAGCAGCAGTGATCAAGAGATATTGCTGTTGTTGAAGGCAATGGTTTTCTATATATATATATATATATATATCTTAGATTCTTAGTACATTGTCTCATAGTAGAATATGTAAGAAAACAAAGAGGAAGAGAGGAAGAAGAAAGGGAAAGAAAGTAATAGGACTTTTTGGTCTTCCTTTAGATTAAGTTTGTTTCTTACCATGAGAATTATAATAAACAGCCCTTGTGTTTGTTAATAAAAGAAGAAATGTTTTACTAGTTCATTTAACTTTTTTTTTTTTTTTTTTTT ATGGGTTCCTGTGTTTCAATCCATAGAAATTCCGATTCCGCCATGAAATTCAGACTCTCAATTGGGTCTAAAACCAACGGAATGGCAATTCCGCCGTCACCCATCAAAGATAACAACACTCCGATCAACGCCGGTGGCGTCTTCGTCAAATCTCAGAGGTCCCCTTCTCACTTGGGTAGCAAAGATGAAGCGTTTTTTGATTCCAGAGGCTGGTTGGATTCAGATTGTGAAGATGATTTCTACAGTGTCAATGGTGATTTCACCCCTTCACGAGGGAACACTCCGGTACACCACAGCTTCGCCTCCGGTACTCCTCGGATCAACCAAGTTCATGTCATTGACGATCGAACTCCGATCGCCCTGCCCGAACCATCGCCAACAGGAAAGAAGAAGCTGGCTGAACTTTTCAGGGAGAGCTCTAGAAATGGCACTGACATACAAGCCAAACCAACTCTAAACGAACTCGCCCTGCAGTCGAATCCCGAAACGCCGTACATCTCAGGAACAAACTCTGTATGCAGCAGCGAGAGGACGACAAATGGAGATGCCTGGATGGAGAAGGAGAGGCCATATGGATCTGTACAATGCTGCCTTCCAAGCTTGGGATCATGTCGTAGCTTCGGCGACCGGAGGAAGAAGGCGAGTCCCGCCATAGCTGTATAA ATGGGTTCCTGTGTTTCAATCCATAGAAATTCCGATTCCGCCATGAAATTCAGACTCTCAATTGGGTCTAAAACCAACGGAATGGCAATTCCGCCGTCACCCATCAAAGATAACAACACTCCGATCAACGCCGGTGGCGTCTTCGTCAAATCTCAGAGGTCCCCTTCTCACTTGGGTAGCAAAGATGAAGCGTTTTTTGATTCCAGAGGCTGGTTGGATTCAGATTGTGAAGATGATTTCTACAGTGTCAATGGTGATTTCACCCCTTCACGAGGGAACACTCCGGTACACCACAGCTTCGCCTCCGGTACTCCTCGGATCAACCAAGTTCATGTCATTGACGATCGAACTCCGATCGCCCTGCCCGAACCATCGCCAACAGGAAAGAAGAAGCTGGCTGAACTTTTCAGGGAGAGCTCTAGAAATGGCACTGACATACAAGCCAAACCAACTCTAAACGAACTCGCCCTGCAGTCGAATCCCGAAACGCCGTACATCTCAGGAACAAACTCTGTATGCAGCAGCGAGAGGACGACAAATGGAGATGCCTGGATGGAGAAGGAGAGGCCATATGGATCTGTACAATGCTGCCTTCCAAGCTTGGGATCATGTCGTAGCTTCGGCGACCGGAGGAAGAAGGCGAGTCCCGCCATAGCTGTATAA MGSCVSIHRNSDSAMKFRLSIGSKTNGMAIPPSPIKDNNTPINAGGVFVKSQRSPSHLGSKDEAFFDSRGWLDSDCEDDFYSVNGDFTPSRGNTPVHHSFASGTPRINQVHVIDDRTPIALPEPSPTGKKKLAELFRESSRNGTDIQAKPTLNELALQSNPETPYISGTNSVCSSERTTNGDAWMEKERPYGSVQCCLPSLGSCRSFGDRRKKASPAIAV Homology
BLAST of Spg001966 vs. NCBI nr
Match: XP_038901054.1 (uncharacterized protein At3g27210-like [Benincasa hispida]) HSP 1 Score: 405.6 bits (1041), Expect = 2.7e-109 Identity = 198/220 (90.00%), Postives = 206/220 (93.64%), Query Frame = 0
BLAST of Spg001966 vs. NCBI nr
Match: XP_011651566.1 (uncharacterized protein At3g27210 isoform X1 [Cucumis sativus]) HSP 1 Score: 395.2 bits (1014), Expect = 3.7e-106 Identity = 193/220 (87.73%), Postives = 201/220 (91.36%), Query Frame = 0
BLAST of Spg001966 vs. NCBI nr
Match: XP_008450086.1 (PREDICTED: uncharacterized protein At3g27210-like [Cucumis melo]) HSP 1 Score: 393.7 bits (1010), Expect = 1.1e-105 Identity = 192/220 (87.27%), Postives = 200/220 (90.91%), Query Frame = 0
BLAST of Spg001966 vs. NCBI nr
Match: KAG6581091.1 (hypothetical protein SDJN03_21093, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 388.3 bits (996), Expect = 4.5e-104 Identity = 190/225 (84.44%), Postives = 204/225 (90.67%), Query Frame = 0
BLAST of Spg001966 vs. NCBI nr
Match: XP_023529186.1 (uncharacterized protein At3g27210-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 387.5 bits (994), Expect = 7.7e-104 Identity = 192/226 (84.96%), Postives = 205/226 (90.71%), Query Frame = 0
BLAST of Spg001966 vs. ExPASy Swiss-Prot
Match: Q9LK32 (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana OX=3702 GN=Y-2 PE=1 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 3.1e-23 Identity = 77/192 (40.10%), Postives = 102/192 (53.12%), Query Frame = 0
BLAST of Spg001966 vs. ExPASy TrEMBL
Match: A0A0A0LB55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588480 PE=4 SV=1) HSP 1 Score: 395.2 bits (1014), Expect = 1.8e-106 Identity = 193/220 (87.73%), Postives = 201/220 (91.36%), Query Frame = 0
BLAST of Spg001966 vs. ExPASy TrEMBL
Match: A0A1S3BP47 (uncharacterized protein At3g27210-like OS=Cucumis melo OX=3656 GN=LOC103491777 PE=4 SV=1) HSP 1 Score: 393.7 bits (1010), Expect = 5.2e-106 Identity = 192/220 (87.27%), Postives = 200/220 (90.91%), Query Frame = 0
BLAST of Spg001966 vs. ExPASy TrEMBL
Match: A0A6J1J5K2 (uncharacterized protein At3g27210-like OS=Cucurbita maxima OX=3661 GN=LOC111481493 PE=4 SV=1) HSP 1 Score: 382.5 bits (981), Expect = 1.2e-102 Identity = 189/226 (83.63%), Postives = 205/226 (90.71%), Query Frame = 0
BLAST of Spg001966 vs. ExPASy TrEMBL
Match: A0A6J1F463 (uncharacterized protein At3g27210 OS=Cucurbita moschata OX=3662 GN=LOC111442001 PE=4 SV=1) HSP 1 Score: 380.6 bits (976), Expect = 4.6e-102 Identity = 188/226 (83.19%), Postives = 203/226 (89.82%), Query Frame = 0
BLAST of Spg001966 vs. ExPASy TrEMBL
Match: A0A6J1EK04 (uncharacterized protein At3g27210-like OS=Cucurbita moschata OX=3662 GN=LOC111435186 PE=4 SV=1) HSP 1 Score: 380.6 bits (976), Expect = 4.6e-102 Identity = 191/234 (81.62%), Postives = 202/234 (86.32%), Query Frame = 0
BLAST of Spg001966 vs. TAIR 10
Match: AT3G27210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25 species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). ) HSP 1 Score: 110.2 bits (274), Expect = 2.2e-24 Identity = 77/192 (40.10%), Postives = 102/192 (53.12%), Query Frame = 0
BLAST of Spg001966 vs. TAIR 10
Match: AT3G01860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 96.7 bits (239), Expect = 2.5e-20 Identity = 80/228 (35.09%), Postives = 109/228 (47.81%), Query Frame = 0
BLAST of Spg001966 vs. TAIR 10
Match: AT3G01860.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 90.9 bits (224), Expect = 1.4e-18 Identity = 60/159 (37.74%), Postives = 79/159 (49.69%), Query Frame = 0
BLAST of Spg001966 vs. TAIR 10
Match: AT5G40860.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 69 Blast hits to 69 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 82.4 bits (202), Expect = 4.9e-16 Identity = 72/209 (34.45%), Postives = 93/209 (44.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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