Spg001954 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg001954
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Locationscaffold10: 4190462 .. 4191766 (-)
RNA-Seq ExpressionSpg001954
SyntenySpg001954
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAGAGACGTTTCTTCGAGAGAATCTAGAGAGTCTAACCCTATTGCATGTTGGAGTCCCCCTCGAGTGGATTTTTGGAAGCTAAATTCAGATGCCGCTTGTTTGGAAAATCCTCCAATGACAGGCGTCGGGGTGATATGTAGGAATAAGGAAGGGGCTGCTATGATAGCTTGTGCTAGATCCATCGATATTTTTTTGGAGGCCCATATTGTTGAGCTTTGGGCTATTCATGAAGGCTTAAAGCAAGCTTTATCTCTGGGCTGTCTGAGATTGGTGGTGGAATCTGATTGCAAAATGGCTGTTGATTTTATAAATGGGAAGGCCACATTATGGAGTGACGCAGAGGCCTGGGTGGAATCCATTTGGGCTTTAATGCCTTGCTTTTTGGATATTAGTTTTAAATTATGTCCAAGAGATAATAACAAAGTGGCTCATGGTATAGCTAGATATGCTAGATCTTTCCAATGTAATGACACTTGGGTAGGCTATTTCCCAAGTTGGTTATATAAGCTGGTCAATGATGACCTCTCTCTTAACCCATGTGGCGGTTTAATAAATTTCCTTATTTTTCAAAAAAAAAAATAATCATGAAATAATTTTAATTGGATAAACTATGTTAATTTAACTAATTAAAATTATTTAATTAATTTTTTTAATAAATATCCTTAACTACAATAATACTACAATAATTTAATATATTTGTATCCATAAAAATTAATTAGATAAATATTTTAATAATAATATGATTATTTATTTATTATAAAGAAATCCAAAAAAATAATTAATTGATTGTAAATAATCTTTAAGTAATTAATTATAGTTATTGAAAAAGGAATTTTTATACTAAATTCATTTAAATAATTTTAATTCAATAATTAAATATATTTTCGATAATGTTAATTCATTAATTATAATTTTAGTAAATATGTAATTACATCCATTTAATAAACTTGGACTAAGTATTTGTTTAAAAAAAACTTGAAAATTTTGGCAAATTATTATTTATTTAATCTAATTAAATAATTTATTATATTATTTTTTAATTTAGTATCCATTAGTTAGTTAATTAACTATATTCAAAATAAAATTGCATATAAAAATAAAAAAGAAGAGATGGGCAAAGAGAAAACTTATACTTTTGCAATGACATAGAAAGCCCTTGCTTATGGGCATAAATGATGCCTGTGAATGCTTTATTCCCAGGGGCTCACCACAGAAACCTTGAAACAAACAAGGGTATCTGAAACTCTTGCTCATCCCCATCTCCAAAACCCTACACCAAACGACCCCTTAGGGAATTGA

mRNA sequence

ATGACCAGAGACGTTTCTTCGAGAGAATCTAGAGAGTCTAACCCTATTGCATGTTGGAGTCCCCCTCGAGTGGATTTTTGGAAGCTAAATTCAGATGCCGCTTGTTTGGAAAATCCTCCAATGACAGGCGTCGGGGTGATATGTAGGAATAAGGAAGGGGCTGCTATGATAGCTTGTGCTAGATCCATCGATATTTTTTTGGAGGCCCATATTGTTGAGCTTTGGGCTATTCATGAAGGCTTAAAGCAAGCTTTATCTCTGGGCTGTCTGAGATTGGTGGTGGAATCTGATTGCAAAATGGCTGTTGATTTTATAAATGGGAAGGCCACATTATGGAGTGACGCAGAGGCCTGGGTGGAATCCATTTGGGCTTTAATGCCTTGCTTTTTGGATATTAGTTTTAAATTATGTCCAAGAGATAATAACAAAGTGGCTCATGGTATAGCTAGATATGCTAGATCTTTCCAATGTAATGACACTTGGGGGCTCACCACAGAAACCTTGAAACAAACAAGGGTATCTGAAACTCTTGCTCATCCCCATCTCCAAAACCCTACACCAAACGACCCCTTAGGGAATTGA

Coding sequence (CDS)

ATGACCAGAGACGTTTCTTCGAGAGAATCTAGAGAGTCTAACCCTATTGCATGTTGGAGTCCCCCTCGAGTGGATTTTTGGAAGCTAAATTCAGATGCCGCTTGTTTGGAAAATCCTCCAATGACAGGCGTCGGGGTGATATGTAGGAATAAGGAAGGGGCTGCTATGATAGCTTGTGCTAGATCCATCGATATTTTTTTGGAGGCCCATATTGTTGAGCTTTGGGCTATTCATGAAGGCTTAAAGCAAGCTTTATCTCTGGGCTGTCTGAGATTGGTGGTGGAATCTGATTGCAAAATGGCTGTTGATTTTATAAATGGGAAGGCCACATTATGGAGTGACGCAGAGGCCTGGGTGGAATCCATTTGGGCTTTAATGCCTTGCTTTTTGGATATTAGTTTTAAATTATGTCCAAGAGATAATAACAAAGTGGCTCATGGTATAGCTAGATATGCTAGATCTTTCCAATGTAATGACACTTGGGGGCTCACCACAGAAACCTTGAAACAAACAAGGGTATCTGAAACTCTTGCTCATCCCCATCTCCAAAACCCTACACCAAACGACCCCTTAGGGAATTGA

Protein sequence

MTRDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTWGLTTETLKQTRVSETLAHPHLQNPTPNDPLGN
Homology
BLAST of Spg001954 vs. NCBI nr
Match: XP_042962749.1 (uncharacterized protein LOC122297028 [Carya illinoinensis])

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-14
Identity = 46/152 (30.26%), Postives = 75/152 (49.34%), Query Frame = 0

Query: 10   SRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEA 69
            SR++  +  W PP     K+N D A        G+G++ R+ EG  ++ C++       +
Sbjct: 979  SRDTPRVLIWKPPPQGSLKMNVDGATFGEIDKAGIGLVLRDHEGNVLMTCSKIEHAVANS 1038

Query: 70   HIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVESIWALMPCF 129
              +E  A+  GL+  L  G  +LV+ESDC   ++ +N  +   SD    ++ I  +   F
Sbjct: 1039 EFIEATAVLRGLQFGLQWGINKLVMESDCLFLINVLNSSSECLSDFAYVIDEIRRIRSYF 1098

Query: 130  LDISFKLCPRDNNKVAHGIARYARSFQCNDTW 162
             +ISF    R  N VAHG+AR+AR+      W
Sbjct: 1099 HEISFVHVCRQGNNVAHGLARFARNVDDVSVW 1130

BLAST of Spg001954 vs. NCBI nr
Match: XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida])

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-14
Identity = 49/159 (30.82%), Postives = 78/159 (49.06%), Query Frame = 0

Query: 3   RDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARS 62
           +D S+++S  S+    WS P   F KLN DAA   +P  +G   I R+ +G+  +    S
Sbjct: 42  KDSSNKKSGTSD--RTWSTPPTSFIKLNVDAAWKFSPYSSGFSAIIRDNQGSLKVVQISS 101

Query: 63  IDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVESI 122
           ID      + E + + +GL+    +   +++V+SDC  A+D         S    W+E I
Sbjct: 102 IDAVYPPPLAEAFVVLQGLRLTSKMNFKKIIVKSDCSGAIDLFLKILISDSSVRVWLEEI 161

Query: 123 WALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTW 162
           W +   F  I+F   PR+ NK+A  +A+  R    ND W
Sbjct: 162 WEISIVFYPINFAYIPRNINKLADIVAKRTRILGINDVW 198

BLAST of Spg001954 vs. NCBI nr
Match: VVA32947.1 (PREDICTED: retrotransposon [Prunus dulcis])

HSP 1 Score: 88.6 bits (218), Expect = 6.5e-14
Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 0

Query: 1    MTRDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACA 60
            ++  +  R+S    P+  W PP    +K+N D A      + GVGV+ RN  G  M AC 
Sbjct: 1118 LSHTIHGRQSSPQAPLHGWRPPPAGIYKINVDGAVKSGDSVRGVGVVVRNANGEFMAACV 1177

Query: 61   RSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVE 120
            R I     A   EL A  EGL+ A+ +G    V+E D +  ++ I             +E
Sbjct: 1178 RRIQASYGARQTELMATIEGLRFAIDMGFTAAVLEMDAQDCINSILSTEECNGIDGLLIE 1237

Query: 121  SIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCND--TW 162
             +  L+  F  +  +  PR  NKVAH +A++A  F CN+  TW
Sbjct: 1238 EVNYLLHNFRAVVCQWTPRSGNKVAHTLAQFA--FHCNEFVTW 1278

BLAST of Spg001954 vs. NCBI nr
Match: OMO72757.1 (hypothetical protein CCACVL1_17615 [Corchorus capsularis])

HSP 1 Score: 88.6 bits (218), Expect = 6.5e-14
Identity = 49/140 (35.00%), Postives = 77/140 (55.00%), Query Frame = 0

Query: 13   SNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIV 72
            S PIA WSPP V  WK+N+DAA  ++  + G+G + R+ EG  + +  + +    +    
Sbjct: 1024 SVPIARWSPPAVGSWKINTDAAFDKDLGVAGLGAVLRDFEGRVLCSIIKKMHFIQDPLFA 1083

Query: 73   ELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVESIWALMPCFLDI 132
             L+AI  GL+ A S G L  V+ESDC +A+  IN  ++ + + +  V SI  L   F  +
Sbjct: 1084 VLYAIQLGLQLARSEGFLTCVIESDCLLAITAINTDSSRFWEGDCLVSSIRDLAREFSLV 1143

Query: 133  SFKLCPRDNNKVAHGIARYA 153
             F    R+ N  AH +A++A
Sbjct: 1144 LFHHIKREVNCCAHAVAKFA 1163

BLAST of Spg001954 vs. NCBI nr
Match: XP_042974894.1 (uncharacterized protein LOC122306534 [Carya illinoinensis])

HSP 1 Score: 88.2 bits (217), Expect = 8.5e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 0

Query: 5   VSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSID 64
           + ++ +RE   +  W PP     K+N D A  ++    GVGV+ R++ G  ++AC++S  
Sbjct: 593 ILNKGNRELPKVLSWKPPPEGSLKINIDGAIFDDFNKAGVGVVLRDQAGRVLVACSKSEP 652

Query: 65  IFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVESIWA 124
                 I+E  A+  GL+  L  G  ++++E+DC   V  +N  +   ++    +  I  
Sbjct: 653 AVPNPEIIEATAMLRGLQFGLQWGTSKVLMETDCLFLVKALNSHSENLTEFAYVLAEIKR 712

Query: 125 LMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTW 162
           LM  F +ISF    R  N VAH +A+YAR+     TW
Sbjct: 713 LMLYFQEISFVHVSRQGNNVAHCLAKYARNVDDVITW 749

BLAST of Spg001954 vs. ExPASy TrEMBL
Match: A0A1R3HQR7 (Ribonuclease H OS=Corchorus capsularis OX=210143 GN=CCACVL1_17615 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-14
Identity = 49/140 (35.00%), Postives = 77/140 (55.00%), Query Frame = 0

Query: 13   SNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIV 72
            S PIA WSPP V  WK+N+DAA  ++  + G+G + R+ EG  + +  + +    +    
Sbjct: 1024 SVPIARWSPPAVGSWKINTDAAFDKDLGVAGLGAVLRDFEGRVLCSIIKKMHFIQDPLFA 1083

Query: 73   ELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVESIWALMPCFLDI 132
             L+AI  GL+ A S G L  V+ESDC +A+  IN  ++ + + +  V SI  L   F  +
Sbjct: 1084 VLYAIQLGLQLARSEGFLTCVIESDCLLAITAINTDSSRFWEGDCLVSSIRDLAREFSLV 1143

Query: 133  SFKLCPRDNNKVAHGIARYA 153
             F    R+ N  AH +A++A
Sbjct: 1144 LFHHIKREVNCCAHAVAKFA 1163

BLAST of Spg001954 vs. ExPASy TrEMBL
Match: A0A5E4FZN9 (PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-14
Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 0

Query: 1    MTRDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACA 60
            ++  +  R+S    P+  W PP    +K+N D A      + GVGV+ RN  G  M AC 
Sbjct: 1118 LSHTIHGRQSSPQAPLHGWRPPPAGIYKINVDGAVKSGDSVRGVGVVVRNANGEFMAACV 1177

Query: 61   RSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVE 120
            R I     A   EL A  EGL+ A+ +G    V+E D +  ++ I             +E
Sbjct: 1178 RRIQASYGARQTELMATIEGLRFAIDMGFTAAVLEMDAQDCINSILSTEECNGIDGLLIE 1237

Query: 121  SIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCND--TW 162
             +  L+  F  +  +  PR  NKVAH +A++A  F CN+  TW
Sbjct: 1238 EVNYLLHNFRAVVCQWTPRSGNKVAHTLAQFA--FHCNEFVTW 1278

BLAST of Spg001954 vs. ExPASy TrEMBL
Match: A0A2I4FLN6 (uncharacterized protein LOC109000195 OS=Juglans regia OX=51240 GN=LOC109000195 PE=4 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 5.3e-14
Identity = 50/143 (34.97%), Postives = 71/143 (49.65%), Query Frame = 0

Query: 19  WSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIH 78
           W PP   F KLN D A   +   +G+GV+ R++ G  ++A  +  D   E   +EL A+ 
Sbjct: 89  WKPPPPGFLKLNVDGAMFADVGKSGIGVVLRDEAGQVVMAATKKEDFVDEPATIELLAVL 148

Query: 79  EGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVESIWALMPCFLDISFKLCP 138
            GL+  LSLG   LVVESDC + V  +       S     ++ +  LM  F + S +   
Sbjct: 149 RGLQFFLSLGIPNLVVESDCLVVVQELQDSQESLSSNGNLIQDVKRLMQLFRNSSVQHVY 208

Query: 139 RDNNKVAHGIARYARSFQCNDTW 162
           RD N VAH +ARYA +      W
Sbjct: 209 RDGNGVAHTLARYAWNVDDVQMW 231

BLAST of Spg001954 vs. ExPASy TrEMBL
Match: A0A251QGB9 (RNase H domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_2G082600 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 0

Query: 1   MTRDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACA 60
           +T  +  R+S    P+  W PP    +K+N D A      + GVGV+ RN  G  M AC 
Sbjct: 8   LTNTIHGRQSSPQAPLQGWRPPPAGSYKINVDGAVKSGDFVRGVGVVVRNANGEFMGACV 67

Query: 61  RSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVE 120
           R I     A   EL A  EGL+ A+ +G    ++E D +  ++ I          +  +E
Sbjct: 68  RRIQASYGARQTELMATIEGLRYAIDMGFTAAILEMDAQDCLNSILSTEEYNGIDDLLIE 127

Query: 121 SIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCND--TW 162
            +  L+  F  +     PR  NKVAH +A++A  F CN+  TW
Sbjct: 128 EVNYLLNNFRAVVCHWTPRCGNKVAHTLAQFA--FHCNEFVTW 168

BLAST of Spg001954 vs. ExPASy TrEMBL
Match: A0A6P6UE91 (uncharacterized protein LOC113710130 OS=Coffea arabica OX=13443 GN=LOC113710130 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13
Identity = 50/154 (32.47%), Postives = 74/154 (48.05%), Query Frame = 0

Query: 8   RESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFL 67
           +++  S+    W PP     KLN+DAA  +N   TG+GV+ RN EG  M   AR+     
Sbjct: 24  QQTTNSSSSKKWRPPSRGTIKLNTDAAFSQNLERTGIGVVARNAEGELMKVWARAELKRS 83

Query: 68  EAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVESIWALMP 127
           E  + E  AI  G++ A       + ++SDCK  VD IN K    ++    +E I  +  
Sbjct: 84  EPQVEEAAAIRMGMQMAWKANWRAVELQSDCKEVVDMINKKQKQQNNIVVILEDIANMRC 143

Query: 128 CFLDISFKLCPRDNNKVAHGIARYARSFQCNDTW 162
            F   +F    RD N+ AH +A++A     N  W
Sbjct: 144 LFEQCTFSFVHRDGNRCAHSVAKFAVKLTTNVEW 177

BLAST of Spg001954 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-11
Identity = 44/148 (29.73%), Postives = 65/148 (43.92%), Query Frame = 0

Query: 12  ESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHI 71
           E N    W  P   + K N+DA      P  G+G I RN+ G  +   AR++        
Sbjct: 130 ERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLE 189

Query: 72  VELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVESIWALMPCFLD 131
            EL A+   +         R++ ESD +  V+ +N     W   +  +E I  L+  F +
Sbjct: 190 AELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSD-DFWPTLQPALEDIQQLLHHFEE 249

Query: 132 ISFKLCPRDNNKVAHGIARYARSFQCND 160
           + F+  PR  NKVA  IAR + SF   D
Sbjct: 250 VKFEFTPRGGNKVADRIARESISFSNYD 276

BLAST of Spg001954 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-09
Identity = 33/137 (24.09%), Postives = 63/137 (45.99%), Query Frame = 0

Query: 19  WSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIH 78
           W PP   + K N+DA    +    G+G + RN++G      AR++         EL A+ 
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479

Query: 79  EGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVESIWALMPCFLDISFKLCP 138
             +          ++ ESD ++ ++ +N    +W   +  ++ +  L+  F ++ F   P
Sbjct: 480 WAVLSLSRFQYNYVIFESDSQVLIEILNND-EIWPSLKPTIQDLQRLLSQFTEVKFVFIP 539

Query: 139 RDNNKVAHGIARYARSF 156
           R+ N +A  +AR + SF
Sbjct: 540 REGNTLAERVARESLSF 555

BLAST of Spg001954 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.4e-06
Identity = 36/145 (24.83%), Postives = 64/145 (44.14%), Query Frame = 0

Query: 19  WSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIH 78
           WSPP  D  K N DA+  E   ++G+G I RN +G  +          +     E   + 
Sbjct: 105 WSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLI 164

Query: 79  EGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVESIWALMPCFLDISFKLCP 138
             ++ +   G  +++ E D +     IN K++     + ++++I + +P F  I F    
Sbjct: 165 WAIQASYGFGHKKVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIPSFESIEFSFKH 224

Query: 139 RDNNKVAHGIARYARSFQCNDTWGL 164
           R+ N  A  +A+ A   + N  W L
Sbjct: 225 REQNGCADFLAKQA--IKENTQWSL 246

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_042962749.11.0e-1430.26uncharacterized protein LOC122297028 [Carya illinoinensis][more]
XP_038902513.11.7e-1430.82uncharacterized protein LOC120089172 [Benincasa hispida][more]
VVA32947.16.5e-1431.90PREDICTED: retrotransposon [Prunus dulcis][more]
OMO72757.16.5e-1435.00hypothetical protein CCACVL1_17615 [Corchorus capsularis][more]
XP_042974894.18.5e-1430.57uncharacterized protein LOC122306534 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1R3HQR73.1e-1435.00Ribonuclease H OS=Corchorus capsularis OX=210143 GN=CCACVL1_17615 PE=4 SV=1[more]
A0A5E4FZN93.1e-1431.90PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1[more]
A0A2I4FLN65.3e-1434.97uncharacterized protein LOC109000195 OS=Juglans regia OX=51240 GN=LOC109000195 P... [more]
A0A251QGB91.2e-1331.90RNase H domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_... [more]
A0A6P6UE912.0e-1332.47uncharacterized protein LOC113710130 OS=Coffea arabica OX=13443 GN=LOC113710130 ... [more]
Match NameE-valueIdentityDescription
AT2G34320.11.1e-1129.73Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT4G29090.12.3e-0924.09Ribonuclease H-like superfamily protein [more]
AT5G65005.11.4e-0624.83Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 30..152
e-value: 2.5E-28
score: 98.4
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 27..157
e-value: 5.1E-17
score: 64.1
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 7..165
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 29..150
e-value: 1.17134E-25
score: 93.918
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 26..155

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg001954.1Spg001954.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity