Spg001900 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg001900
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionlight-regulated protein-like
Locationscaffold10: 711930 .. 714540 (+)
RNA-Seq ExpressionSpg001900
SyntenySpg001900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATCTCAAGCTTAGCATCATCACTTCCAAAATTACATATCAAAATGCAGGCTGTTCTTAGCATTGTTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTCGCGTCGCTCGGCAATCAAAGCAACCGCGACGGTCGCCTACGACACTTCGGTGGTTGATTACAGCTCCGCTATCTCGTAAGTCATTTTCTCCCATATGTTGAGGATCCCATATTGAAAAGATTAGTGGAGACCTCACAATTTATAAGCTACGAGGGTTATTCCACTCATTGCCAATTGGTTTTGAGATGGAATTTCATGTAATATAATACCATAGACTTCACTTTTGTACTAAACTTGAATTTGAACCACCCATGTCAATATCTTACTAACAGATAACGACGTAGGTAATGGATAACCAAAAAAAATTGTTAAATTATCAATTTGGTTTCTTAGCTCGTAGGGTTATATCTTTTTAGTCACTATACTTTAAAAAGTTTCTAATGGATTATGAAATTTCAATTGTGCTTATTTGATCCTTATTTTTCAAGGCTACTAATAAAATCAAGTTTGATTAATGCACAAATTAACCATTAGATAATTTTGTCAAAACTCATAAATTTCAACAAAAACTTAGCTCTAATGTCATTTGTCTTTGAAATCTTATAAGTTTTGTACTATACATATGTTTTATAATTCATTAAATGCATATGAAAAATACTTTTTGTAATGATCTTTTTAACAAATAACATATGAGAGAGTTTAAAATTGCAATATTTTGTCAAGTTTAAAGTTAAGATGGTAACATTTATCTAAGTTTGAGTTGCAATTTGATGAAATTGAAAGTTTAGGTAAAAACCGATACTAACCTAAGTAAAAATTATTTTTTTTCCTGAAAAATATTGGACTAAATTAATACAACCCTTAAGAATAAGATCATATTAAGAAAAATGTTAATGTAACTCTGCCTGTGTTGGTTTGGTTTGGTTTGGTATAGGGTGTTTCCTGCAGAAGCATGTGAAACCATCGGTGGAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTGAGGCTTCAGCCTCCTGCAGATCACAATCAAACAGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGATTACGCCGATTCGAGGACGTGAGAAACACATCCCTCTTACGACATGTTTGAAAGTGATTTTGAAATTGACAAAATCACTTCTAGACATGTTCTTATTTTCCTTTTCTTTAATTTGCTTCAATCTAACCCTTTTATTGGATATTAGTTATAAATTATAAGTTTAGTCTCCGAACTATTGGTTATTTGGTTCCTGAACTTTGAAAAGTGTTAAATAGGTTCTCAAAATTTCGATTTTGTGTCTAATAAGTTATTGAACTTTAAAATGTATCAATAAGTTCATAAACTTTTAATTTTGTATCCATTCCTTGACTTTCAATTTTATATCTAATAGGTCATTGACCTATTCGACGACATTTTTTAAAATTCATAAACCTATTAGAATCAATATTTAAAGTTTAGGATCCTATATGGTATAAAATTCAATTTTATATATGATAGATTGGTTAGTTTTTAAAAATCTTGAATATATCATATTAGGAATCTATTAGATACAAATTGAAAGTTCAAACACCTATTAGATATCAAAAATCAAATAGACACAAATTTAAAAGTTGAGAGATTATACTTGTACTTTAATCTTATTAATATTATTAATGGACACAAAAGATAGATTTTTTTTTTTTTAGTACATCGAACTTCTGACCTCTTAATCGAGAGTATATGTCAATTACCGTTGAGTTAAACTCGCTTTGGCAAAGATAGATTTTTTTAGTAATATTTTCAAATTCTGACTTGATTAGATATAAAGTGACGTGACTTTTTTACTAGTCAAATCATGTTTTTTCTTCTTCAAACCACATAATCATTTATGTACGAAAACTTTTATTAATTCAATATACAAAATCTTACTGACTTGACAAGAATGTACAAATATTTCAAAATAATTTTCCATCTATTGAATATTATAATTTTAGCTTAAACAAAAACATTGTACTTTTATTAAAATAATTATTCAGTTTCCCAAATTTATCCTGCAATGATGAACAAAATTACTGCAAATTTGAATATTCATGTGTATATTTCATCCAACAATTCCTTTTTTTTTTCTTTCTGAAAATGCTGCATGTTTACACTTACACAGAACACTTGAAACTCTGTGCATTGCCTTGGAGTTTGTAGAAATTACCACAAATTACTGAAACTGTCATTATTTTTTATTTTTTATTATCATTTTTTGTGCAGCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAATTATTCTTAGTATTATTATTATTATTTTGTGTATTGTATAGTTTTATTCACATATACAAGGCTCTTAGTTAGGCCATATTACAGATTCTGTTACCCACTTTTCAGAATTCTCAAAGCTTAAATCCTTCCTAAACCTGCTTTATTTATTGTATATTGTTAATATTCGTGAGTGTTCTGAC

mRNA sequence

ATGCAGGCTGTTCTTAGCATTGTTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTCGCGTCGCTCGGCAATCAAAGCAACCGCGACGGTCGCCTACGACACTTCGGTGGTTGATTACAGCTCCGCTATCTCGGTGTTTCCTGCAGAAGCATGTGAAACCATCGGTGGAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTGAGGCTTCAGCCTCCTGCAGATCACAATCAAACAGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGATTACGCCGATTCGAGGACCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAA

Coding sequence (CDS)

ATGCAGGCTGTTCTTAGCATTGTTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTCGCGTCGCTCGGCAATCAAAGCAACCGCGACGGTCGCCTACGACACTTCGGTGGTTGATTACAGCTCCGCTATCTCGGTGTTTCCTGCAGAAGCATGTGAAACCATCGGTGGAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTGAGGCTTCAGCCTCCTGCAGATCACAATCAAACAGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGATTACGCCGATTCGAGGACCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAA

Protein sequence

MQAVLSIVVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEFLNGVF
Homology
BLAST of Spg001900 vs. NCBI nr
Match: XP_023531712.1 (light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.2 bits (544), Expect = 7.4e-52
Identity = 117/143 (81.82%), Postives = 122/143 (85.31%), Query Frame = 0

Query: 1   MQAVLSIVVPPLLPS-TPSKNISHFPSSPLISIGSL-SSRRSAIKATATVAYDTSVVDYS 60
           MQAVLSIVVPPLLPS TPS N+SHFPSSP  SI SL SSRRS IKA   VAYDTSVVDYS
Sbjct: 1   MQAVLSIVVPPLLPSLTPSNNLSHFPSSP--SIRSLSSSRRSTIKAVTAVAYDTSVVDYS 60

Query: 61  SAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDY-ADSRTV 120
           S ISVFPAEACETIGGEACWANIFPEVRLQ  AD  + A  +LEE+DREYLDY A S+TV
Sbjct: 61  SVISVFPAEACETIGGEACWANIFPEVRLQASADSAEAAAVALEEIDREYLDYAAQSKTV 120

Query: 121 FPGEACDDLGGEFCEAEFLNGVF 141
           FPGEACDDLGGEFC AEFLNGVF
Sbjct: 121 FPGEACDDLGGEFCGAEFLNGVF 141

BLAST of Spg001900 vs. NCBI nr
Match: XP_022928578.1 (light-regulated protein-like [Cucurbita moschata])

HSP 1 Score: 211.5 bits (537), Expect = 4.8e-51
Identity = 112/142 (78.87%), Postives = 118/142 (83.10%), Query Frame = 0

Query: 1   MQAVLSIVVPPLLPS-TPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSS 60
           MQAVLSIVVPPLLPS TPS N+SHFPSS        SSRRS IKA   VAYDTSVVDYSS
Sbjct: 1   MQAVLSIVVPPLLPSLTPSNNLSHFPSSSPSIRSHSSSRRSTIKAVTAVAYDTSVVDYSS 60

Query: 61  AISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDY-ADSRTVF 120
            ISVFPAEACETIGGEACWANIFPEVRLQ  AD ++ A  +LEE+DREYLDY A S+TVF
Sbjct: 61  VISVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLDYAAQSKTVF 120

Query: 121 PGEACDDLGGEFCEAEFLNGVF 141
           PGEACDDLGGEFC AEFLNGVF
Sbjct: 121 PGEACDDLGGEFCGAEFLNGVF 142

BLAST of Spg001900 vs. NCBI nr
Match: XP_038893926.1 (light-regulated protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 206.1 bits (523), Expect = 2.0e-49
Identity = 111/141 (78.72%), Postives = 119/141 (84.40%), Query Frame = 0

Query: 1   MQAVLSIVVPPLLPSTPSKNISHFPSS-PLISIGSLSSRRSAIKATATVAYDTSVVDYSS 60
           MQAVLSI VPPLLPST S N    PS  PLIS  S  SRRSAIKATA+V YD S+VDYSS
Sbjct: 1   MQAVLSIAVPPLLPSTLSNN---NPSQFPLISFSSHCSRRSAIKATASVVYDASIVDYSS 60

Query: 61  AISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADSRTVFP 120
           AISVFPAEACETIGGEACWAN+FPEVR+QP  ++ + AVA LEE+DREYLDYADSRTVFP
Sbjct: 61  AISVFPAEACETIGGEACWANMFPEVRIQPSLNNQKPAVA-LEEIDREYLDYADSRTVFP 120

Query: 121 GEACDDLGGEFCEAEFLNGVF 141
           GEACDDLGGEFCE EFLN VF
Sbjct: 121 GEACDDLGGEFCEPEFLNSVF 137

BLAST of Spg001900 vs. NCBI nr
Match: XP_004145699.2 (light-regulated protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 2.9e-48
Identity = 110/143 (76.92%), Postives = 119/143 (83.22%), Query Frame = 0

Query: 1   MQAVLSIVVPPLLPST--PSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYS 60
           MQAVLSI VP LLPS+   S   SHF   PLI+  S SSRRS+IKATA+V YDTSVVDYS
Sbjct: 18  MQAVLSIAVPSLLPSSTLSSNKPSHF---PLITFSSHSSRRSSIKATASVVYDTSVVDYS 77

Query: 61  SAISVFPAEACETIGGEAC-WANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADSRTV 120
           SAISVFPAEACETIGGEAC W N+FPEVRLQ  + +NQ  VAS EE+DREYLDYADS+TV
Sbjct: 78  SAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEEIDREYLDYADSKTV 137

Query: 121 FPGEACDDLGGEFCEAEFLNGVF 141
           FPGEACDDLGGEFCE EFLNGVF
Sbjct: 138 FPGEACDDLGGEFCEPEFLNGVF 157

BLAST of Spg001900 vs. NCBI nr
Match: KAG6588864.1 (Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.1 bits (510), Expect = 6.5e-48
Identity = 114/157 (72.61%), Postives = 121/157 (77.07%), Query Frame = 0

Query: 1   MQAVLSIVVPPLLPS-TPSKNISHFPSSPLISIGSL-SSRRSAIKATATVAYDTSVVDYS 60
           MQAVLSIVVPPLLPS TPS N+SHFPSSP  SI SL SSRRS IKA   VAYDTSVVDYS
Sbjct: 15  MQAVLSIVVPPLLPSLTPSNNLSHFPSSP--SIRSLSSSRRSTIKAVTAVAYDTSVVDYS 74

Query: 61  SAI--------------SVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVASLEEV 120
           S I               VFPAEACETIGGEACWANIFPEVRLQ  AD ++ A  +LEE+
Sbjct: 75  SVIINYARIDLYTRVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEI 134

Query: 121 DREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF 141
           DREYL Y A S+TVFPGEACDDLGGEFC AEFLNG+F
Sbjct: 135 DREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 169

BLAST of Spg001900 vs. ExPASy Swiss-Prot
Match: Q03200 (Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.0e-21
Identity = 55/99 (55.56%), Postives = 68/99 (68.69%), Query Frame = 0

Query: 38  RRSAIK---ATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHN 97
           RR A++   A A VA + + VDYSS ISVFP EAC+ IGGEAC   ++PE +L   A   
Sbjct: 30  RRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQMYPEAKLSSSA-AV 89

Query: 98  QTAVASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEA 134
             + A+ EEVDR+YL Y +  TVFP EACDDLGGEFC+A
Sbjct: 90  AVSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFCKA 127

BLAST of Spg001900 vs. ExPASy Swiss-Prot
Match: Q96500 (Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.8e-17
Identity = 62/141 (43.97%), Postives = 81/141 (57.45%), Query Frame = 0

Query: 1   MQAVLSIVVPPLLP-----STPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVV 60
           MQ  L I    LLP     S+P        ++    + SL S  S+  +++++  D + V
Sbjct: 1   MQGALFIKPTILLPLPSSVSSPKLTFLLPHATKASRLSSLRSNNSS--SSSSLTSDPNTV 60

Query: 61  DYSSAI-SVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADS 120
           DY+S+I SVFPAEACE I G AC A+I+PEV+L         A    E VDREY +Y   
Sbjct: 61  DYNSSILSVFPAEACEVISGYACSADIYPEVKLDTKPVSRPVA---SEPVDREYEEYNSP 120

Query: 121 RTVFPGEACDDLGGEFCEAEF 136
           +TVF  EACDDLGGEFCE +F
Sbjct: 121 KTVFREEACDDLGGEFCEPDF 136

BLAST of Spg001900 vs. ExPASy TrEMBL
Match: A0A6J1EPG4 (light-regulated protein-like OS=Cucurbita moschata OX=3662 GN=LOC111435343 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.3e-51
Identity = 112/142 (78.87%), Postives = 118/142 (83.10%), Query Frame = 0

Query: 1   MQAVLSIVVPPLLPS-TPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSS 60
           MQAVLSIVVPPLLPS TPS N+SHFPSS        SSRRS IKA   VAYDTSVVDYSS
Sbjct: 1   MQAVLSIVVPPLLPSLTPSNNLSHFPSSSPSIRSHSSSRRSTIKAVTAVAYDTSVVDYSS 60

Query: 61  AISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDY-ADSRTVF 120
            ISVFPAEACETIGGEACWANIFPEVRLQ  AD ++ A  +LEE+DREYLDY A S+TVF
Sbjct: 61  VISVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLDYAAQSKTVF 120

Query: 121 PGEACDDLGGEFCEAEFLNGVF 141
           PGEACDDLGGEFC AEFLNGVF
Sbjct: 121 PGEACDDLGGEFCGAEFLNGVF 142

BLAST of Spg001900 vs. ExPASy TrEMBL
Match: A0A0A0L8G9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598910 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48
Identity = 110/143 (76.92%), Postives = 119/143 (83.22%), Query Frame = 0

Query: 1   MQAVLSIVVPPLLPST--PSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYS 60
           MQAVLSI VP LLPS+   S   SHF   PLI+  S SSRRS+IKATA+V YDTSVVDYS
Sbjct: 18  MQAVLSIAVPSLLPSSTLSSNKPSHF---PLITFSSHSSRRSSIKATASVVYDTSVVDYS 77

Query: 61  SAISVFPAEACETIGGEAC-WANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADSRTV 120
           SAISVFPAEACETIGGEAC W N+FPEVRLQ  + +NQ  VAS EE+DREYLDYADS+TV
Sbjct: 78  SAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEEIDREYLDYADSKTV 137

Query: 121 FPGEACDDLGGEFCEAEFLNGVF 141
           FPGEACDDLGGEFCE EFLNGVF
Sbjct: 138 FPGEACDDLGGEFCEPEFLNGVF 157

BLAST of Spg001900 vs. ExPASy TrEMBL
Match: A0A5A7VMP8 (Light-regulated protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00270 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.4e-48
Identity = 111/141 (78.72%), Postives = 120/141 (85.11%), Query Frame = 0

Query: 3   AVLSIVVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAIS 62
           AVLSI VP LLPS+   N SH    P I+ GS SSRRSAIKATA+V YDTSVVDYSSAIS
Sbjct: 4   AVLSIAVPSLLPSSTLSNSSH-SHFPFITFGSNSSRRSAIKATASVVYDTSVVDYSSAIS 63

Query: 63  VFPAEACETIGGEA-CWANIFPEVRLQPPADHNQT-AVASLEEVDREYLDY-ADSRTVFP 122
           VFPAEACETIGGEA CWAN+FPEVRLQP  ++NQ  AVA+LEE+DREYLDY ADS+TVF 
Sbjct: 64  VFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFR 123

Query: 123 GEACDDLGGEFCEAEFLNGVF 141
           GEACDDLGGEFCEAEFLNGVF
Sbjct: 124 GEACDDLGGEFCEAEFLNGVF 143

BLAST of Spg001900 vs. ExPASy TrEMBL
Match: A0A1S4DXW1 (light-regulated protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.5e-47
Identity = 110/141 (78.01%), Postives = 119/141 (84.40%), Query Frame = 0

Query: 3   AVLSIVVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAIS 62
           AVLSI VP LLPS+   N SH    P I+ GS SSR SAIKATA+V YDTSVVDYSSAIS
Sbjct: 17  AVLSIAVPSLLPSSTLSNSSH-SHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSAIS 76

Query: 63  VFPAEACETIGGEA-CWANIFPEVRLQPPADHNQT-AVASLEEVDREYLDY-ADSRTVFP 122
           VFPAEACETIGGEA CWAN+FPEVRLQP  ++NQ  AVA+LEE+DREYLDY ADS+TVF 
Sbjct: 77  VFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFR 136

Query: 123 GEACDDLGGEFCEAEFLNGVF 141
           GEACDDLGGEFCEAEFLNGVF
Sbjct: 137 GEACDDLGGEFCEAEFLNGVF 156

BLAST of Spg001900 vs. ExPASy TrEMBL
Match: A0A1S3BND3 (light-regulated protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.5e-47
Identity = 110/141 (78.01%), Postives = 119/141 (84.40%), Query Frame = 0

Query: 3   AVLSIVVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAIS 62
           AVLSI VP LLPS+   N SH    P I+ GS SSR SAIKATA+V YDTSVVDYSSAIS
Sbjct: 23  AVLSIAVPSLLPSSTLSNSSH-SHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSAIS 82

Query: 63  VFPAEACETIGGEA-CWANIFPEVRLQPPADHNQT-AVASLEEVDREYLDY-ADSRTVFP 122
           VFPAEACETIGGEA CWAN+FPEVRLQP  ++NQ  AVA+LEE+DREYLDY ADS+TVF 
Sbjct: 83  VFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFR 142

Query: 123 GEACDDLGGEFCEAEFLNGVF 141
           GEACDDLGGEFCEAEFLNGVF
Sbjct: 143 GEACDDLGGEFCEAEFLNGVF 162

BLAST of Spg001900 vs. TAIR 10
Match: AT3G26740.1 (CCR-like )

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-18
Identity = 62/141 (43.97%), Postives = 81/141 (57.45%), Query Frame = 0

Query: 1   MQAVLSIVVPPLLP-----STPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVV 60
           MQ  L I    LLP     S+P        ++    + SL S  S+  +++++  D + V
Sbjct: 1   MQGALFIKPTILLPLPSSVSSPKLTFLLPHATKASRLSSLRSNNSS--SSSSLTSDPNTV 60

Query: 61  DYSSAI-SVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADS 120
           DY+S+I SVFPAEACE I G AC A+I+PEV+L         A    E VDREY +Y   
Sbjct: 61  DYNSSILSVFPAEACEVISGYACSADIYPEVKLDTKPVSRPVA---SEPVDREYEEYNSP 120

Query: 121 RTVFPGEACDDLGGEFCEAEF 136
           +TVF  EACDDLGGEFCE +F
Sbjct: 121 KTVFREEACDDLGGEFCEPDF 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023531712.17.4e-5281.82light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022928578.14.8e-5178.87light-regulated protein-like [Cucurbita moschata][more]
XP_038893926.12.0e-4978.72light-regulated protein, chloroplastic-like [Benincasa hispida][more]
XP_004145699.22.9e-4876.92light-regulated protein, chloroplastic [Cucumis sativus][more]
KAG6588864.16.5e-4872.61Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
Match NameE-valueIdentityDescription
Q032007.0e-2155.56Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ... [more]
Q965002.8e-1743.97Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1... [more]
Match NameE-valueIdentityDescription
A0A6J1EPG42.3e-5178.87light-regulated protein-like OS=Cucurbita moschata OX=3662 GN=LOC111435343 PE=4 ... [more]
A0A0A0L8G91.4e-4876.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598910 PE=4 SV=1[more]
A0A5A7VMP85.4e-4878.72Light-regulated protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S4DXW13.5e-4778.01light-regulated protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 ... [more]
A0A1S3BND33.5e-4778.01light-regulated protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT3G26740.12.0e-1843.97CCR-like [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009856Light regulated Lir1PFAMPF07207Lir1coord: 1..133
e-value: 3.1E-51
score: 173.1
IPR009856Light regulated Lir1PANTHERPTHR36762LIGHT-REGULATED PROTEIN 1, CHLOROPLASTICcoord: 1..140
NoneNo IPR availablePANTHERPTHR36762:SF3LIGHT-REGULATED PROTEINcoord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg001900.1Spg001900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast