Spg001900 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAATCTCAAGCTTAGCATCATCACTTCCAAAATTACATATCAAAATGCAGGCTGTTCTTAGCATTGTTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTCGCGTCGCTCGGCAATCAAAGCAACCGCGACGGTCGCCTACGACACTTCGGTGGTTGATTACAGCTCCGCTATCTCGTAAGTCATTTTCTCCCATATGTTGAGGATCCCATATTGAAAAGATTAGTGGAGACCTCACAATTTATAAGCTACGAGGGTTATTCCACTCATTGCCAATTGGTTTTGAGATGGAATTTCATGTAATATAATACCATAGACTTCACTTTTGTACTAAACTTGAATTTGAACCACCCATGTCAATATCTTACTAACAGATAACGACGTAGGTAATGGATAACCAAAAAAAATTGTTAAATTATCAATTTGGTTTCTTAGCTCGTAGGGTTATATCTTTTTAGTCACTATACTTTAAAAAGTTTCTAATGGATTATGAAATTTCAATTGTGCTTATTTGATCCTTATTTTTCAAGGCTACTAATAAAATCAAGTTTGATTAATGCACAAATTAACCATTAGATAATTTTGTCAAAACTCATAAATTTCAACAAAAACTTAGCTCTAATGTCATTTGTCTTTGAAATCTTATAAGTTTTGTACTATACATATGTTTTATAATTCATTAAATGCATATGAAAAATACTTTTTGTAATGATCTTTTTAACAAATAACATATGAGAGAGTTTAAAATTGCAATATTTTGTCAAGTTTAAAGTTAAGATGGTAACATTTATCTAAGTTTGAGTTGCAATTTGATGAAATTGAAAGTTTAGGTAAAAACCGATACTAACCTAAGTAAAAATTATTTTTTTTCCTGAAAAATATTGGACTAAATTAATACAACCCTTAAGAATAAGATCATATTAAGAAAAATGTTAATGTAACTCTGCCTGTGTTGGTTTGGTTTGGTTTGGTATAGGGTGTTTCCTGCAGAAGCATGTGAAACCATCGGTGGAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTGAGGCTTCAGCCTCCTGCAGATCACAATCAAACAGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGATTACGCCGATTCGAGGACGTGAGAAACACATCCCTCTTACGACATGTTTGAAAGTGATTTTGAAATTGACAAAATCACTTCTAGACATGTTCTTATTTTCCTTTTCTTTAATTTGCTTCAATCTAACCCTTTTATTGGATATTAGTTATAAATTATAAGTTTAGTCTCCGAACTATTGGTTATTTGGTTCCTGAACTTTGAAAAGTGTTAAATAGGTTCTCAAAATTTCGATTTTGTGTCTAATAAGTTATTGAACTTTAAAATGTATCAATAAGTTCATAAACTTTTAATTTTGTATCCATTCCTTGACTTTCAATTTTATATCTAATAGGTCATTGACCTATTCGACGACATTTTTTAAAATTCATAAACCTATTAGAATCAATATTTAAAGTTTAGGATCCTATATGGTATAAAATTCAATTTTATATATGATAGATTGGTTAGTTTTTAAAAATCTTGAATATATCATATTAGGAATCTATTAGATACAAATTGAAAGTTCAAACACCTATTAGATATCAAAAATCAAATAGACACAAATTTAAAAGTTGAGAGATTATACTTGTACTTTAATCTTATTAATATTATTAATGGACACAAAAGATAGATTTTTTTTTTTTTAGTACATCGAACTTCTGACCTCTTAATCGAGAGTATATGTCAATTACCGTTGAGTTAAACTCGCTTTGGCAAAGATAGATTTTTTTAGTAATATTTTCAAATTCTGACTTGATTAGATATAAAGTGACGTGACTTTTTTACTAGTCAAATCATGTTTTTTCTTCTTCAAACCACATAATCATTTATGTACGAAAACTTTTATTAATTCAATATACAAAATCTTACTGACTTGACAAGAATGTACAAATATTTCAAAATAATTTTCCATCTATTGAATATTATAATTTTAGCTTAAACAAAAACATTGTACTTTTATTAAAATAATTATTCAGTTTCCCAAATTTATCCTGCAATGATGAACAAAATTACTGCAAATTTGAATATTCATGTGTATATTTCATCCAACAATTCCTTTTTTTTTTCTTTCTGAAAATGCTGCATGTTTACACTTACACAGAACACTTGAAACTCTGTGCATTGCCTTGGAGTTTGTAGAAATTACCACAAATTACTGAAACTGTCATTATTTTTTATTTTTTATTATCATTTTTTGTGCAGCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAATTATTCTTAGTATTATTATTATTATTTTGTGTATTGTATAGTTTTATTCACATATACAAGGCTCTTAGTTAGGCCATATTACAGATTCTGTTACCCACTTTTCAGAATTCTCAAAGCTTAAATCCTTCCTAAACCTGCTTTATTTATTGTATATTGTTAATATTCGTGAGTGTTCTGAC ATGCAGGCTGTTCTTAGCATTGTTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTCGCGTCGCTCGGCAATCAAAGCAACCGCGACGGTCGCCTACGACACTTCGGTGGTTGATTACAGCTCCGCTATCTCGGTGTTTCCTGCAGAAGCATGTGAAACCATCGGTGGAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTGAGGCTTCAGCCTCCTGCAGATCACAATCAAACAGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGATTACGCCGATTCGAGGACCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAA ATGCAGGCTGTTCTTAGCATTGTTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTCGCGTCGCTCGGCAATCAAAGCAACCGCGACGGTCGCCTACGACACTTCGGTGGTTGATTACAGCTCCGCTATCTCGGTGTTTCCTGCAGAAGCATGTGAAACCATCGGTGGAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTGAGGCTTCAGCCTCCTGCAGATCACAATCAAACAGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGATTACGCCGATTCGAGGACCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAA MQAVLSIVVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEFLNGVF Homology
BLAST of Spg001900 vs. NCBI nr
Match: XP_023531712.1 (light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 214.2 bits (544), Expect = 7.4e-52 Identity = 117/143 (81.82%), Postives = 122/143 (85.31%), Query Frame = 0
BLAST of Spg001900 vs. NCBI nr
Match: XP_022928578.1 (light-regulated protein-like [Cucurbita moschata]) HSP 1 Score: 211.5 bits (537), Expect = 4.8e-51 Identity = 112/142 (78.87%), Postives = 118/142 (83.10%), Query Frame = 0
BLAST of Spg001900 vs. NCBI nr
Match: XP_038893926.1 (light-regulated protein, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 206.1 bits (523), Expect = 2.0e-49 Identity = 111/141 (78.72%), Postives = 119/141 (84.40%), Query Frame = 0
BLAST of Spg001900 vs. NCBI nr
Match: XP_004145699.2 (light-regulated protein, chloroplastic [Cucumis sativus]) HSP 1 Score: 202.2 bits (513), Expect = 2.9e-48 Identity = 110/143 (76.92%), Postives = 119/143 (83.22%), Query Frame = 0
BLAST of Spg001900 vs. NCBI nr
Match: KAG6588864.1 (Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 201.1 bits (510), Expect = 6.5e-48 Identity = 114/157 (72.61%), Postives = 121/157 (77.07%), Query Frame = 0
BLAST of Spg001900 vs. ExPASy Swiss-Prot
Match: Q03200 (Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=LIR1 PE=1 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 7.0e-21 Identity = 55/99 (55.56%), Postives = 68/99 (68.69%), Query Frame = 0
BLAST of Spg001900 vs. ExPASy Swiss-Prot
Match: Q96500 (Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1 PE=1 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 2.8e-17 Identity = 62/141 (43.97%), Postives = 81/141 (57.45%), Query Frame = 0
BLAST of Spg001900 vs. ExPASy TrEMBL
Match: A0A6J1EPG4 (light-regulated protein-like OS=Cucurbita moschata OX=3662 GN=LOC111435343 PE=4 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 2.3e-51 Identity = 112/142 (78.87%), Postives = 118/142 (83.10%), Query Frame = 0
BLAST of Spg001900 vs. ExPASy TrEMBL
Match: A0A0A0L8G9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598910 PE=4 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48 Identity = 110/143 (76.92%), Postives = 119/143 (83.22%), Query Frame = 0
BLAST of Spg001900 vs. ExPASy TrEMBL
Match: A0A5A7VMP8 (Light-regulated protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00270 PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 5.4e-48 Identity = 111/141 (78.72%), Postives = 120/141 (85.11%), Query Frame = 0
BLAST of Spg001900 vs. ExPASy TrEMBL
Match: A0A1S4DXW1 (light-regulated protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 3.5e-47 Identity = 110/141 (78.01%), Postives = 119/141 (84.40%), Query Frame = 0
BLAST of Spg001900 vs. ExPASy TrEMBL
Match: A0A1S3BND3 (light-regulated protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 3.5e-47 Identity = 110/141 (78.01%), Postives = 119/141 (84.40%), Query Frame = 0
BLAST of Spg001900 vs. TAIR 10
Match: AT3G26740.1 (CCR-like ) HSP 1 Score: 89.7 bits (221), Expect = 2.0e-18 Identity = 62/141 (43.97%), Postives = 81/141 (57.45%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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