Spg001878 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001878
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold10: 3592709 .. 3596630 (+)
RNA-Seq Expression	Spg001878
Synteny	Spg001878

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAGAAAGAAAAGAAAGGAAATAAAGAAGAAAAGAAAGGAAAGAAAAGAAAAAGGAAAAAAGGAAAAAAAAGAAAAGAAATGAAATGGGAAATTGACAGCAAGCAAACCCACCACCGCCTAACTTATTTTTAGCCCACTACCAGCTCATTTCTCATCATTTTTCATTCCAAAAGTTACAGAACACTTGAGGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGATTTGATTTTCTTGAAAGTTAGTTCATTTTCTAACAAATTTCATGAAGGAAGCTTGACCTAAATCGTATGAGAAGTGGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCCATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTGCAACTTGCATGAAGAATTCGTGAGCCAAAAATGACGTGAAGTAGGTTTAATTTCAGGAGGAAGATAAAGGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTAATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATATGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAGAGTAGAGTGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGGGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAGTAGGTCGAGTCTATAAACCGGGAAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAACGGTTGTTCATGATTATATGTTTTACATGCTTTCCTATGAATGATACATGGTTTTTATGAACGGTTTCAAGCATGAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGTCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTGTGGATTAGCAAGTACTTTTAAACGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGTTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAACGTTTTCATGTGATTTTCTGAGATTTCTATTAACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGACCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATATACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATATTTTAGAAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTGACTTCCGGATTTAGAATTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAAGAGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCAGGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCTGCTGTGTGATGTTTCATATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAATGTTTCAGTAGGGTCAACAGGGATCATTAGAGGTGACGATGTCTGTTGGCTTCACGCTGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATAAATCTTCTATCACTGATAGAAAACTATCATTTTTGTTTCTAAAACCCATGCCACTGATTTCGTTTTGATTTTGTTTTTATAAATGTTGAAGCAAAACAACATGGAAATTGAACCGGAAGAAAAGAAAAAAACAAAGCGGAAGTTGAAATTTAAAGAAGGGGAGACCTCAACAAAACAAAAAAACAAAAACCAAAAGATATGTACAAGATTATCACGTAATCAAATATACTATTGGTTTCTATCAAATACACTATTGATTTCTATTAGCGATAAAATGTTATCAGTGATAGAAATCTATCACTGGATTTTTATCACTGTGATTCTATCAGCAATAAATTTCTATTAGTGATACATTCTATCAATGATAGAAATCTATCACGGATAGAAATCAAAACAAGGGCAAAACGGGAATTAAAAAAATGTTTTAAAAATTTTGCTATATTTGCAATTTTTTATAAAACTTTTTATGTCTGCAATTAACCATTGGAATTTAGCCACCCATTATAATTTTCCTATTTTAGTTTTATTAAAATAAATTATATGTTGCATATATCTAACCGCCTTTAATTATTTAAGTAATTATCAATTTCGTTCTTAATCTTTTTAATTCTAAATTTTATTTTATAGGTGTATTGAAATTTTCAATTAAGCCATTTGATAAAATATAATAATTAAAATTTGTTAATATAAAAATAATATGTTATTAAAATATCGTTTGGTTAACATATTTGGACCATGCTACTTTCATGAAAACATATTTTGTTGATAAATTCTATGTTTCAAGTAGCATTCAAAAGGAGATGTTCAAATAGGGTATTAAATTTCTCCTCTCGTTTTCTGAGAGATTTCCCTCGACATGAGGGTTTTCCCTGTTTTGGGGTTTTAGGGTTCCGGCGAACTCGAGGAGGCTGAGGCACGACTGGATCGCGTCGAAGACGAGGCGGAGTGGTGAGTGGGGCGGTGACCGAAAGGTGGAAGGTGGGTCTGATTCTTGTGTATAGGTTCGGGCGGCGTCACGGTGTGCGAGTAGTTTCAGCGAGGAAGGGTTTTTCTGCGATTTGGCTGTCAACAGCGAAGAGGGTTCTGGTGGACTCGACGAGGCTGAGGCGCAGCTGGATCGCGACAGAGACGAGGCGGAGAGGTGAATGGGGCGGTGACCGAAAGGTGGAAGGTGGGTCTGAGTCTTGTGTGTAGGTTCAGGCGGCGTCATGGTGTGCGAGTAGTTTCAACGAGGAAGGGTTTTTCTGTGATTTGGTTGTCGGCGGCGAAGAGGTGACGGAGAGGACGTCCGAGGGTTAGAGTCGGTGGTTTTTCTGAGGGCACCGCCGTTTCTTCTTGTGGGTTTTCTTTCTCCCGAGTGGATTGCGGCGGCAGACTGATCCCGTTTTTGTGTGGTTTTCTTGCTGGTTTTCTCAAAGAGGGCTGCGAGAAATCGCCGGCAAATTGGAGCGATGATGATAGAGTGTCGTTGTGAGTGAGGTTGTTTCATTCTGTGGTTTTTTTCTGTTTTTCCTTCTCGTTTGCTTGTCCCTTTTCTATGTTTTTTCCTATTCTTGTTTCGTGTGTTCTCGTTGTGTGTTTTCTTTTCTGTTTGTCTCGTCGATTTCCTTACTGTTGGGTTCTCTTCTTTACTTTGCAGGTGGTAGCAGTGCGTGGTGCAGGGAGTTTGTGCGGCAGGAGAGGAGGTAG

mRNA sequence

ATGAGAAGTGGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCCATTTGGAGGAAGATAAAGGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTAATTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGGTTCCGGCGAACTCGAGGAGGCTGAGGCACGACTGGATCGCGTCGAAGACGAGGCGGAGTGCGAAGAGGGTTCTGGTGGACTCGACGAGGCTGAGGCGCAGCTGGATCGCGACAGAGACGAGGCGGAGAGGGCTGCGAGAAATCGCCGGCAAATTGGAGCGATGATGATAGAGTGTCGTTGTGGTAGCAGTGCGTGGTGCAGGGAGTTTGTGCGGCAGGAGAGGAGGTAG

Coding sequence (CDS)

ATGAGAAGTGGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCCATTTGGAGGAAGATAAAGGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTAATTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGGTTCCGGCGAACTCGAGGAGGCTGAGGCACGACTGGATCGCGTCGAAGACGAGGCGGAGTGCGAAGAGGGTTCTGGTGGACTCGACGAGGCTGAGGCGCAGCTGGATCGCGACAGAGACGAGGCGGAGAGGGCTGCGAGAAATCGCCGGCAAATTGGAGCGATGATGATAGAGTGTCGTTGTGGTAGCAGTGCGTGGTGCAGGGAGTTTGTGCGGCAGGAGAGGAGGTAG

Protein sequence

MRSGWFLEWKTEHRIFEQTRRISGVLWCFEHSGVYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESGSGELEEAEARLDRVEDEAECEEGSGGLDEAEAQLDRDRDEAERAARNRRQIGAMMIECRCGSSAWCREFVRQERR

Homology

[Close]

BLAST of Spg001878 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-16
Identity = 58/98 (59.18%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 34  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVL 93
           V+KSNQKL+L+ + G + K + +L           GN   + SG +      PLSTLSVL
Sbjct: 38  VHKSNQKLYLDIESGKSGKWDVMLR----------GNRSSLQSGELDTTVIFPLSTLSVL 97

Query: 94  RDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES 126
           RDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY ES
Sbjct: 98  RDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFES 125

[Close]

BLAST of Spg001878 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-16
Identity = 58/98 (59.18%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 34  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVL 93
           V+KSNQKL+L+ + G + K + +L           GN   + SG +      PLSTLSVL
Sbjct: 38  VHKSNQKLYLDIESGKSGKWDVMLR----------GNRSSLQSGELDTTVIFPLSTLSVL 97

Query: 94  RDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES 126
           RDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY ES
Sbjct: 98  RDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFES 125

[Close]

BLAST of Spg001878 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 3.0e-14
Identity = 66/123 (53.66%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 34  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAV 93
           V+KSNQKL+LE DK         L      LDK+V           PLSTLSVLRDNDAV
Sbjct: 287 VHKSNQKLYLEIDKEWPRGNRPGLQT--GELDKIV---------IFPLSTLSVLRDNDAV 346

Query: 94  VEIELPVPDTLPTSAESSRSSSSTWLELYIESGSGEL---EEAEARLDRVEDEAECEEGS 153
           VEIELP+PDTLPTSAESS S+SSTWLELY ES   E+   + ++AR         C EGS
Sbjct: 347 VEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR----AASYVCWEGS 394

[Close]

BLAST of Spg001878 vs. NCBI nr
Match: KAA0040194.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 3.0e-14
Identity = 66/123 (53.66%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 34  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAV 93
           V+KSNQKL+LE DK         L      LDK+V           PLSTLSVLRDNDAV
Sbjct: 287 VHKSNQKLYLEIDKEWPRGNRPGLQT--GELDKIV---------IFPLSTLSVLRDNDAV 346

Query: 94  VEIELPVPDTLPTSAESSRSSSSTWLELYIESGSGEL---EEAEARLDRVEDEAECEEGS 153
           VEIELP+PDTLPTSAESS S+SSTWLELY ES   E+   + ++AR         C EGS
Sbjct: 347 VEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR----AASYVCWEGS 394

[Close]

BLAST of Spg001878 vs. NCBI nr
Match: TYK27997.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 9.7e-13
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 34  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVL 93
           V+KSNQKL+L   +     L++   D    +D +   L L   G +      PLSTLSVL
Sbjct: 176 VHKSNQKLYLIWPRENRPSLQTGELDKTLSIDYMTEILSLRPYGTVCTQVIFPLSTLSVL 235

Query: 94  RDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIE 125
           RDNDAVVEIELPVPDTLP+S ES  S+SSTWLELY E
Sbjct: 236 RDNDAVVEIELPVPDTLPSSTESFESNSSTWLELYFE 272

[Close]

BLAST of Spg001878 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 58/98 (59.18%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 34  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVL 93
           V+KSNQKL+L+ + G + K + +L           GN   + SG +      PLSTLSVL
Sbjct: 38  VHKSNQKLYLDIESGKSGKWDVMLR----------GNRSSLQSGELDTTVIFPLSTLSVL 97

Query: 94  RDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES 126
           RDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY ES
Sbjct: 98  RDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFES 125

[Close]

BLAST of Spg001878 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 58/98 (59.18%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 34  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVL 93
           V+KSNQKL+L+ + G + K + +L           GN   + SG +      PLSTLSVL
Sbjct: 38  VHKSNQKLYLDIESGKSGKWDVMLR----------GNRSSLQSGELDTTVIFPLSTLSVL 97

Query: 94  RDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES 126
           RDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY ES
Sbjct: 98  RDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFES 125

[Close]

BLAST of Spg001878 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 66/123 (53.66%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 34  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAV 93
           V+KSNQKL+LE DK         L      LDK+V           PLSTLSVLRDNDAV
Sbjct: 287 VHKSNQKLYLEIDKEWPRGNRPGLQT--GELDKIV---------IFPLSTLSVLRDNDAV 346

Query: 94  VEIELPVPDTLPTSAESSRSSSSTWLELYIESGSGEL---EEAEARLDRVEDEAECEEGS 153
           VEIELP+PDTLPTSAESS S+SSTWLELY ES   E+   + ++AR         C EGS
Sbjct: 347 VEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR----AASYVCWEGS 394

[Close]

BLAST of Spg001878 vs. ExPASy TrEMBL
Match: A0A5D3DR18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00320 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 66/123 (53.66%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 34  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAV 93
           V+KSNQKL+LE DK         L      LDK+V           PLSTLSVLRDNDAV
Sbjct: 287 VHKSNQKLYLEIDKEWPRGNRPGLQT--GELDKIV---------IFPLSTLSVLRDNDAV 346

Query: 94  VEIELPVPDTLPTSAESSRSSSSTWLELYIESGSGEL---EEAEARLDRVEDEAECEEGS 153
           VEIELP+PDTLPTSAESS S+SSTWLELY ES   E+   + ++AR         C EGS
Sbjct: 347 VEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR----AASYVCWEGS 394

[Close]

BLAST of Spg001878 vs. ExPASy TrEMBL
Match: A0A5A7VI26 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002210 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.7e-13
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 34  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVL 93
           V+KSNQKL+L   +     L++   D    +D +   L L   G +      PLSTLSVL
Sbjct: 190 VHKSNQKLYLIWPRENRPSLQTGELDKTLSIDYMTEILSLRPYGTVCTQVIFPLSTLSVL 249

Query: 94  RDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIE 125
           RDNDAVVEIELPVPDTLP+S ES  S+SSTWLELY E
Sbjct: 250 RDNDAVVEIELPVPDTLPSSTESFESNSSTWLELYFE 286

The following BLAST results are available for this feature:

BLAST of Spg001878 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062409.1	2.5e-16	59.18	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK26572.1	2.5e-16	59.18	putative Retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK25935.1	3.0e-14	53.66	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0040194.1	3.0e-14	53.66	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK27997.1	9.7e-13	54.64	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg001878 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg001878 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V9N3	1.2e-16	59.18	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]
A0A5D3DSY7	1.2e-16	59.18	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7T9P7	1.5e-14	53.66	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G000...	[more]
A0A5D3DR18	1.5e-14	53.66	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0032...	[more]
A0A5A7VI26	4.7e-13	54.64	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Spg001878 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 123..150
None	No IPR available	COILS	Coil	Coil	coord: 153..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001878.1	Spg001878.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding