Spg001823 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg001823
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold8: 33752629 .. 33752835 (+)
RNA-Seq ExpressionSpg001823
SyntenySpg001823
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCTAATGGTTGTCCCACAGTTCACCCTTCTGATCGTTGATTGTAGAGTTCTCCGATCAGCAACCGAGCGCGACGGTGTCGATGGCCGTAATGTCGCTGAAAAGCCTGATAGCCTAGCACCACGATCAAAGGGTTCTGGCAAAAGTGGTGATCAAGTTTCTACACTGGCTTCGGGACCAAGCAGGAAGGGCGCTGGCCATTAG

mRNA sequence

ATGATGCTAATGGTTGTCCCACAGTTCACCCTTCTGATCGTTGATTGTAGAGTTCTCCGATCAGCAACCGAGCGCGACGGTGTCGATGGCCGTAATGTCGCTGAAAAGCCTGATAGCCTAGCACCACGATCAAAGGGTTCTGGCAAAAGTGGTGATCAAGTTTCTACACTGGCTTCGGGACCAAGCAGGAAGGGCGCTGGCCATTAG

Coding sequence (CDS)

ATGATGCTAATGGTTGTCCCACAGTTCACCCTTCTGATCGTTGATTGTAGAGTTCTCCGATCAGCAACCGAGCGCGACGGTGTCGATGGCCGTAATGTCGCTGAAAAGCCTGATAGCCTAGCACCACGATCAAAGGGTTCTGGCAAAAGTGGTGATCAAGTTTCTACACTGGCTTCGGGACCAAGCAGGAAGGGCGCTGGCCATTAG

Protein sequence

MMLMVVPQFTLLIVDCRVLRSATERDGVDGRNVAEKPDSLAPRSKGSGKSGDQVSTLASGPSRKGAGH
Homology
BLAST of Spg001823 vs. NCBI nr
Match: TYK01636.1 (uncharacterized protein E5676_scaffold38G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0

Query: 1  MMLMVVPQFTLLIVDCRVLRSATERDGVDGRNVAEKPDSLAPRSKGSGKSGDQVSTLASG 60
          M+LM +P F  +  + R+LRS  E DGV   +V EKP  L P+ K S  SG++V TLASG
Sbjct: 13 MILMAIPNFA-IFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSSSGNRVVTLASG 72

Query: 61 PSRKGAGH 69
          PSRKG GH
Sbjct: 73 PSRKGGGH 79

BLAST of Spg001823 vs. NCBI nr
Match: KAA0043050.1 (uncharacterized protein E6C27_scaffold75G001340 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0

Query: 1  MMLMVVPQFTLLIVDCRVLRSATERDGVDGRNVAEKPDSLAPRSKGSGKSGDQVSTLASG 60
          M+LM +P F  +  + R+LRS  E DGV   +V EKP  L P+ K S  SG++V TLASG
Sbjct: 13 MILMAIPNFA-IFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSSSGNRVVTLASG 72

Query: 61 PSRKGAGH 69
          PSRKG GH
Sbjct: 73 PSRKGGGH 79

BLAST of Spg001823 vs. NCBI nr
Match: KAE8652345.1 (hypothetical protein Csa_022541, partial [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 4.3e-05
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 1   MMLMVVPQFTLLIVDCRVLRSATERDGVDGRNV-AEKPDSLAPRSKGSGKSGDQVSTLAS 60
           M+LM +P F  +  + R+LRS  ER  V   +V  EKP  L P+ K S  SGD+V TLAS
Sbjct: 33  MILMAIPNFA-IFANSRMLRSEAERGSVKEHDVDQEKPKRLTPQPKDSSSSGDRVFTLAS 92

Query: 61  GPSRKGAGH 69
           GPSRKG GH
Sbjct: 93  GPSRKGGGH 100

BLAST of Spg001823 vs. ExPASy TrEMBL
Match: A0A5D3BTU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38G00040 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.5e-07
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0

Query: 1  MMLMVVPQFTLLIVDCRVLRSATERDGVDGRNVAEKPDSLAPRSKGSGKSGDQVSTLASG 60
          M+LM +P F  +  + R+LRS  E DGV   +V EKP  L P+ K S  SG++V TLASG
Sbjct: 13 MILMAIPNFA-IFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSSSGNRVVTLASG 72

Query: 61 PSRKGAGH 69
          PSRKG GH
Sbjct: 73 PSRKGGGH 79

BLAST of Spg001823 vs. ExPASy TrEMBL
Match: A0A5A7TI98 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001340 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.5e-07
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0

Query: 1  MMLMVVPQFTLLIVDCRVLRSATERDGVDGRNVAEKPDSLAPRSKGSGKSGDQVSTLASG 60
          M+LM +P F  +  + R+LRS  E DGV   +V EKP  L P+ K S  SG++V TLASG
Sbjct: 13 MILMAIPNFA-IFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSSSGNRVVTLASG 72

Query: 61 PSRKGAGH 69
          PSRKG GH
Sbjct: 73 PSRKGGGH 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK01636.11.8e-0652.94uncharacterized protein E5676_scaffold38G00040 [Cucumis melo var. makuwa][more]
KAA0043050.11.8e-0652.94uncharacterized protein E6C27_scaffold75G001340 [Cucumis melo var. makuwa][more]
KAE8652345.14.3e-0552.17hypothetical protein Csa_022541, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BTU18.5e-0752.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TI988.5e-0752.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg001823.1Spg001823.1mRNA