Spg001744 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001744
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold10: 3814579 .. 3817038 (-)
RNA-Seq Expression	Spg001744
Synteny	Spg001744

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGACTTGGGAGTGTTGTGCTGACTTGGAGGTGTCTTGGTCTTGTTGTTTTACACCCAACAAGTCCGTAATGGCATAAAAGATCGACTCTTGGTAAGTTCACGTTTTTTGGTTATACTATTTGAATCATATATACTTGTTCATACTCTTTGTTATTAACCATGCAGGCGAAATGGGATGTGGATTTGTCGAAGTCACATACTAACAAGTATGTGGAACGACAAAATGAACATGTTTAAGGAGTATAGGTGCAAGTTTCATAGGTACTACAAGGAATTCAAGGACCCTAAAGTTGCTCGAGAAAATCCACCAAAAAGGATTACAGAGTACCGGAATGATTGAAATATGCTATGCGACAGATGGGAGACTCCCGAATGGATTATACGTTTTCTTGTTTTACTTATAGTTATGTGTAGGATGTTTTTTTTTTTTTAAAAAAAAAAAAAAGTCTACTAATCATTATTTTTTAGGCAAAAGCGGAGCGAAATAAGAATAGTCGCGCACAACTCCCCTACAACCATCGAAGTGGATGTAAGTCTTTCGTTCAGAAGCAAGAAGAACTGGTAAGGCAAATACTTTTTTCTTTTTGTTTTGTCTTTTTATTCCTTATCTCTTTATTATGACTATTGGTGTGTGTTTTGGTCTTAAAGAAAGAACTACATGGTCGTGACGTTGGGCCAGTGGATTTGTTCCACGATAGTCATTTTACTGAGAAGAAGAGATGGATCAACGACAAAGCGAAAGATGTATACGTATGTTATATTTCTTAGTAATGATTGTATGTTCTTTGTATTTTTCGTTTGACCCTATTATATTATGAATGTAGTTGGAAATGGACTGGCTACTGAAAGCTTCATCAGAAGAAGGGTCTGAGCAGGTCTCGCAACCTGAGGTTATGAAATAGGTTTTGGGCACTCGACCAGGCCACATCAGAGGTCTTGGTTGGGATCCAAAATCTAGCTCGTCTGTCAATGTCTCGTCTTCAACCCCTCGTGAAAAAGAGCTAGAGAAGAAAGTAGAGATGATGCAATTTGAGATGGATGCGCTCAAGGGCACGCATGAGATGTGGGAACAAAGGTGGGCTCAATTCCAACAATTCATGGGCGAACATCAGGGAGGAGTGTCTTCGAACTAATAGGTATGTACCAAGTTTAGGTGATTTATGTACTATGCTTAATTTAGCTTCAAGTACATGATTATTATATGATTTGTGTGTATGTGGCTATTCTGCAGTTATGGTAGCCACTTGATGTGTATACTTTGTGAACTTGTTGTTGATTATGCATTGTTTATAAAATTTTGGGTTTGCTTTGTCTGTAAAACATAGTTAATAAAACATAGTTTTTGGTTTATGGTATAATCCATTATTTGAAATTGGTGAAACACGAATTCTCTCCCTTGTTGCCATTGTATGAGATATAAGGTCTTGTCATGTTAGTTAATTGTCATTTTGAATTGGTTTCGAGATCTATCCCATGCTTGTGGTAAACTTGGAAGGTCAAACTTACCTTATTTAACACTAGCACAACTTTTTCATTCACCTTAAAATGGCCTATTATGAAGGTTATAGTTTTCTAGGTTGAGAGTGGCTTATACTTGAAAGGTTTAAAGGTCATTATAGTTTTGGACTAAGAGAAGTAAGATTTTGCAATGTTCTTCGTAATGATTCATAATTCCAATGAAAAGTTCAATTTTTCATGGTCTAGACTGGGAGTTTGTGCTCTTCAGTTTCTTCCCCATTGGAAAATGGACTTTTTGTTGTGGTTAAAGTTTTTTTTTCCCAAAATACTTGGAAAAATTTCAAAGGTTCTTTCGTTGCTTTGATCATTTCGAGTCCACTACTTTAAAAGCATCTGCGGTGTTATTTTTCAATTGCTATCTGTTAACTGATAGAGAAGAAGAACCAGGATGGAATTTGTTCTAATGTTTATTTAGATTTTGGCATATTTATGTTGTTGTAATGTTTATTCGTAGTTGACTGGTCATCATGACATTGTACAACTCTTTCTGGAATTTGTTCTAGTTTGTTTTGAAGTCTTACAATATACTATCAACCGGCTATATCAATCTCCGATTCCCCCTAGTATTAGGAATGTTAGTCTCATTTAAATTCAGCTGTTGTCCATGGATTTTGATGCGACTGTCAAAGTTGTTTTTCAGATCTGATTGTTTGTTTTGATGTTATGGCGGTGATGGATTGGATTTTGGCTGCTGGTATAGGTGTTTTGCTCCAAAGATTTAGTGTTGTGGATTGGTTTGTTGAACTTTTTTTTTTTTTTTTTTTGCTTGGTTTTGGAGTTCTCTGTGGACACAAATTGATAGTGTTTAGATGTTATGATATGATATATGATATGGTTGGTTATTTTGGTTTCTAGTTGATAGTATCGTTAGTTGTAATGATGTGGTTGGAGAACCTAATGATGTGGTTGTCAAAATTGTTTTGAATGTGATTGATTGA

mRNA sequence

ATGCTGACTTGGGAGTGTTGTGCTGACTTGGAGGTGTCTTGGTCTTGTTGTTTTACACCCAACAAGTCCGCGAAATGGGATGTGGATTTGTCGAAGTCACATACTAACAAGTATGTGGAACGACAAAATGAACATGTTTTGGGCACTCGACCAGGCCACATCAGAGGTCTTGGTTGGGATCCAAAATCTAGCTCGTCTGTCAATGTCTCGTCTTCAACCCCTCGTGAAAAAGAGCTAGAGAAGAAAGTAGAGATGATGCAATTTGAGATGGATGCGCTCAAGGGCACGCATGAGATGTGGGAACAAAGTTGTTTTTCAGATCTGATTGTTTGTTTTGATGTTATGGCGGTGATGGATTGGATTTTGGCTGCTGGTATAGTTGATAGTATCGTTAGTTGTAATGATGTGGTTGGAGAACCTAATGATGTGGTTGTCAAAATTGTTTTGAATGTGATTGATTGA

Coding sequence (CDS)

ATGCTGACTTGGGAGTGTTGTGCTGACTTGGAGGTGTCTTGGTCTTGTTGTTTTACACCCAACAAGTCCGCGAAATGGGATGTGGATTTGTCGAAGTCACATACTAACAAGTATGTGGAACGACAAAATGAACATGTTTTGGGCACTCGACCAGGCCACATCAGAGGTCTTGGTTGGGATCCAAAATCTAGCTCGTCTGTCAATGTCTCGTCTTCAACCCCTCGTGAAAAAGAGCTAGAGAAGAAAGTAGAGATGATGCAATTTGAGATGGATGCGCTCAAGGGCACGCATGAGATGTGGGAACAAAGTTGTTTTTCAGATCTGATTGTTTGTTTTGATGTTATGGCGGTGATGGATTGGATTTTGGCTGCTGGTATAGTTGATAGTATCGTTAGTTGTAATGATGTGGTTGGAGAACCTAATGATGTGGTTGTCAAAATTGTTTTGAATGTGATTGATTGA

Protein sequence

MLTWECCADLEVSWSCCFTPNKSAKWDVDLSKSHTNKYVERQNEHVLGTRPGHIRGLGWDPKSSSSVNVSSSTPREKELEKKVEMMQFEMDALKGTHEMWEQSCFSDLIVCFDVMAVMDWILAAGIVDSIVSCNDVVGEPNDVVVKIVLNVID

Homology

[Close]

BLAST of Spg001744 vs. NCBI nr
Match: XP_022156286.1 (uncharacterized protein LOC111023212 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-04
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 46  VLGTRPGHIRGLGWDP-----KSSSSVNVSSSTPREKELEKKVEMMQFEMDALKGTHEMW 104
           VLG RP H++GLG+ P     K  SS NV+SST  EKELEKKVE M+ EM  +K  ++  
Sbjct: 181 VLGDRPDHVKGLGYGPQPTLCKRGSSSNVTSSTLYEKELEKKVEDMEVEMREMKTENQRL 240

[Close]

BLAST of Spg001744 vs. ExPASy TrEMBL
Match: A0A6J1DUH3 (uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023212 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 46  VLGTRPGHIRGLGWDP-----KSSSSVNVSSSTPREKELEKKVEMMQFEMDALKGTHEMW 104
           VLG RP H++GLG+ P     K  SS NV+SST  EKELEKKVE M+ EM  +K  ++  
Sbjct: 181 VLGDRPDHVKGLGYGPQPTLCKRGSSSNVTSSTLYEKELEKKVEDMEVEMREMKTENQRL 240

The following BLAST results are available for this feature:

BLAST of Spg001744 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156286.1	2.8e-04	50.79	uncharacterized protein LOC111023212 [Momordica charantia]	[more]

BLAST of Spg001744 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg001744 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUH3	1.4e-04	50.79	uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Spg001744 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 76..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001744.1	Spg001744.1	mRNA