Spg001718 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001718
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold10: 3374228 .. 3379318 (-)
RNA-Seq Expression	Spg001718
Synteny	Spg001718

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCAGTAAAACAGTTGGGCAAGACCCAAGTGGAACGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGAGGGAAGTCCCTGATTCGGTTCGCTTCCTAGAATCTCGTCTTGAAGAGATTGCGACGAGGACAGATAAGATCGATGCGGTAGCTGGCCGCGTGGATGGAATGCCCATCCAAGAATTGATTATGAGGGTTGAAAACCTCGAGAACAGAGCTGCGAAACCTAGTAACTTCGAGCGTGGGGACAGCTCGACGGGCTCTGCTGCCCAAATGGAGGAGCGTGTCGATGGTCTAGACAGCTCCCAGAAAGCAATATTTCAGATGGTCACAGAACTGTCTGAAGATGTGAAAGCCGCCCTCGACGTCGTCAGAGCAGAAGTGGCGGACTTAAGCGCCAGACTAAACCTCACCATGAGAGCGGTGGGAAACCAAACCCCGACAGGGGGTGCGGTCCAATTAAACAAAGTAAAAGTCCCCGAGCCGAAACCCTTCTGTGGGGTTCGAGACGCCAAAGCCCTGGAGAACTTTATCTTCGATCTGGAACAGTACTTCAGGGCCACGAATACGACAACAGAGGAAGTGTTAGCAGAAAGGACCCGTCGTGTCGGCAACCCACGACGAGATCTACAAGAATTCTTAGTGAAGTGGAAGGGGCTCCCAGAGGCCGAAATCAGTTGGGAGCGCGCTGAAGACCTGAAGACTGCTGCCCTCCAGATCGCGGAGTTCGAGCAACGTCGGTTGACAGAGACGTCAACCATTTAAGTGGGGGAGGATGTCACGGTCATGCTTGTCCAAGGCGTGTTGCCCATGGCCGCATGCCCATGTCAACCCTTTCCCCTCATGCTTTCATTATATGTATTTCCTTTGTATCGCTTGTTTACTATCCTTTGTATTTCTCAAGTGTATGACTCCTCGTGATTTTCATGTGTAAGCCTGCCAAGGCTAAAATGCTTAATAATATACTATAGGGGGGTACGACTAGTTGTCAAACCTTCCTACCCGAGAGTTGTATGCTATCAAGCTGTTGTTGTGCCTTTGCTTACTTGATAGTCTGTGCAACAAATACTCTTTCAAAATGTCTTCAAACGTTTTCCAAAACCTTTTCTCTAACCCCGTTTTCTAAAACCGTTTTCCAAGAACGGGGGTAGAGGTTGCGATATTCGCCCGTTGTGCCACCGGCGATCCGTTTTCAAGTTGGCTGACTTACTTGTGAGCGAAAGTAAGTGCCGCACAGTCGCTTTACGAGACCCTAAAGACCGCGACTGTGACACTCGGCCTCGGGCAATGGCTGAGGCCGATGCCATGGTCGCCCTCGGCCCACTTGCGTGGCCCAAGTTCCTCCGCCTCTGTTTGGTCTCTATTGTCCCTGGTCGTCCCGGTTCCACCTGGTTCAACCCGAATGGTCTTTGAAAGCCTAGAAACCCTAGAGTAGGAACATGTATATAAACCCTTTTTCGTCACTGAAGAAAGGATCCCGAACTCTATTCTTTAAACTCTACTCCTCCTCTTCCTCTCCCACTTTCTCATTTTACTCCTTATTAACTTAAGCATTGGAGGCAGTGTGGCAAGCACCACACTGGTGTGCAGATTTACTTTGTTTTGCAGGCCACGTCTTTCCCTTAATACAAATTCACTGCTGGTGTCACGTGAAGGTCAGGTGAGTTCTGTCTGTCCATATTTTGACATCAACAAGTGTCATGCTAAAATTATGATTAAAAAATGGGGGGGGGGGCGAAAAAAGAAAATAAAGGGACCAAATTGGTCATTTTTTAAAATTACAGTGACTAAAACGAACATTTTGAAAGTATGGTAACCAACCTGAACCAAAGTCAAAACTACATAGACTAAAATAGATGTTTTGGGAGTAGACTAAAATGAACTAAAGTCAAGATACAAGAATCAAAATAGTATTTAAATGCCAACAAAAACATAGTTCAACTAGTATAAAGCTATTTTCAAAAAAAAAAAAAACTAGCATAAAGCTTTGTTTAAAAAAAAACATAAGACTAACACTCTCAACCAAGAGGCCAGAAGTTCAAATCTCTCATATCACATGTGGTAAAAAAATAGTATTTAAATTGATTTTTTTTTTCCTTCTTTTTAAAAGCAAATTCGAAACATGATTTCAGGATTAAATGTCGGCGTACAATAATTAAAGTCGAGGCATCCAATTTTGACTAGTCGATTTGTCGTTTAGAGTGGGCTGGGGGGCATGATTTTCCAGATAAGGTGGGCCCACGATCTTACGTGGCGTTTTCAAATTCATTGGATCGAATCTTCTAAAAGGCCGAAGGTATGGCCTCATGGAGTGCCCATCCAGTGTAGGTGGGCCGACAGCCCAACACAATATTTCCAACATGGCAACTCCTCACAAAATAATTCATCCTAATTTGTGGTAAAATGAACCTACTAGCACCCTCAAATTGAAAATTGATAAAAATAATGAAAAAAAAAATTCAATGTATATCCCTAAACTTTATAAGTTATATCAATTACAATTTTAAACCAATAATCATTTGAATTTAAATTCTAAGATTTTTAACTATTTGGTTTTTGGCTTTTGGTTTTTGAAATTATGTTTGTTTCCCCTAATTTCCTCATCATGGTTTTCATGTTTGTTAAGGATATTTGAATTCTTAGTCAAATTCCAAAACACAAAAACTAATTTTTAAAACTAATTTTTTGTTTAGTTTTCAAAACTTAAAAGTTGGTTTTTGAAAATATCGGAAGAATGTAGATAACAAAACAAAGAAATTTATAGGTAGAAGTAGTGTTTATAAGCTTAATTTTTAAAAATTCAAAACAAAAAACAAAATGGTTATCAAATTGAGCCTTAGGGATCCGTTACTAATTTATAACTATTTTCATTTGATTACATTTAAAATTGATTCAAAACCACCTAAATAAATTTATTCTTCTCCCTAAATTAGGGACAAAAAATAATCATGTAAGTTTTTTAAATAAGTAAAGAAAAACAAAGGAAGACAAAGGAGAGATAAAAATCACTTATATTAATGAAAAGTTGCTATTATTTATTTGATTCTAGCATTTATCTTTAATATTATGTTAATCTAATTTGCATTTAAAAAAGTTTTATACGTTAAGAGTGCTAACAAATCCGCACATTGGATAGGGAAGAGAATGATCATACCTATGTATATGAGGACAATTATCTCTATTTGTACGAGGATTTTTTTGGTGAAACCAAAAGCAAAGTAATGAGAGCTTATCCTCAAAGTGGATAGTATCATACTATTGTGGAGATATGTGATTGATTCGTTGTCATCAATATTGTGAATTTTATGCCTTGGTCTTTAAACTTTTATGTTTGTGTTTAATAGGTTTTAAACTTTAAAAAATATCTAGTAGGTCCCTTAACTTTTTTATTTTATATCTTATAGATCTCTAAACTTTTAAAATTATATCTAAATAATATAAACTAATTTGTTTTTAGAAAAGTTATCCATAAACCTGTAGTAAGGACTACATTTAAGATTTACTAAAGTATATGGATAAAAATTAAACATCTTAAAGTAAATGAACTAAAATGAATCAAATCTCGAAGTACATGGACCAAAATGGTATTTTGGTAGCATGTTTGGGAAGTGTTGGCTAAGATTGCTTTCTAGCCAATATCTTTAGCATGTAGGGAAAGTGTTGGCTAAGATGGATTGCTTATTAGTCAATCTTGTTTGATTGTATCAAAAAGAAGCTTTAGATAAACGATACACAATCACACATGTAAGGAAAAATTATTCGAAGAGGCTAAAACAATGTGGCTGACAATTTTAAACACTTTTTTTTTGTAGTGAGGGAATTTGAATCTCTGTCTTCTTAGTCTAGAATACATGTCAATTACTGTTGAACTATTATCACTTTGACGTGACAATTTTAAACCGTACGATCTAAAAAAGAGAAGAAAAAATGTAATCTGATCAATGTATTTAAAGGTTTAGTCATTTAGATGAAGACAACCACATATAACGAATTTTCCTTACATTGTTTTAAAATGATATAAACAAATTTAGGTTATGTGAAGATAAAAATGTATCATGGGTCTTGTCTATCCAATAAGATGTGTAGTGATTACTGAATTGTGGTTGATGATACAAACCTAAATACTCTATTAAATTGATCACATAACTAAAAGAATGAAAAAAAGGGTAAGTTTACGACTTTTGATAATTAAATTGATTTTCTATGGTCTTTTTTTATTATTAAGATACAAATGATTTAAAATGTAGATGTCGGCCGAAATGTCAAGAACTCAATTTTATGAAAACATTAATAAAATGTAGATGTCGATGGTGTTGGGGTTTATGTCCTAGAACTCAAGTTTTGTTATCCTTTATATAAATAAAGATGTTATTCAGTGAAATTGTTTATTTATAACTTATAATCCAATAGAAAACATTCATGGTTATAATATGAGATACTCAAACTATATAGTGAATATGGACAGGGATCAAGTTCGAGTATATAACCTAAATGGTCTATAGTAAATGAATAAGGTTGGGTACCTTGTTCTGGTAACATGAACGTCCACTTTGATCCCACGATCTCCTTTTTATTGAAGCCCTTCTCAATTAGAAATAAGGCCCGGGGTATTGGGCACATATGATGAGAAAGGGCACCGGGGCCTGTTGCTTTAGCTCTTCGGCCTGAGCCTCAAAAAGGTTCATTTGCCGTTCCACCCCCCGATACTCCTTGGAAGACATTAGCCGGCGAAAGGCCTCCCTTTCCTGTTCACTCGATGGATGCGGCCTACTTTGCGAATAAGGCAAACGACGTGATCCTAGATCGTTCATGTAAAGACATGCGAGTAGGGGCATCCTGTGTAAAAGATGTTTACACAAGACTGGACCGAGAAATAAGTCACTCATACTTTATAATGTCGTTTACTGTTAAGATTGATTATTTCATGCGATGACTTAGGTAACTCGATCTTAATCCTGAGCTTACTATGAACTCTTGTTTGTTTAGGGTTATCCTTTGATCTGCATACGTGAGAGTGGTCGTAAAATTCCGTTCAATAAACCTCCCATTTTGGGGATAACACTAGATGAATGGCTGGGGACATAG

mRNA sequence

ATGTCGGCAGTAAAACAGTTGGGCAAGACCCAAGTGGAACGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGAGGGAAGTCCCTGATTCGGTTCGCTTCCTAGAATCTCGTCTTGAAGAGATTGCGACGAGGACAGATAAGATCGATGCGGTAGCTGGCCGCGTGGATGGAATGCCCATCCAAGAATTGATTATGAGGGTTGAAAACCTCGAGAACAGAGCTGCGAAACCTAGTAACTTCGAGCGTGGGGACAGCTCGACGGGCTCTGCTGCCCAAATGGAGGAGCGTAACGGGGGTAGAGGTTGCGATATTCGCCCGTTGTGCCACCGGCGATCCGTTTTCAAGTTGGCTGACTTACTTGTGAGCGAAAGTAAGTGCCGCACAGTCGCTTTACGAGACCCTAAAGACCGCGACTGTGACACTCGGCCTCGGGCAATGGCTGAGGCCGATGCCATGGTCGCCCTCGGCCCACTTGCGTGGCCCAAGTTCCTCCGCCTCTGTTTGGTCTCTATTGTCCCTGGTCGTCCCGGTTCCACCTGGCCACGTCTTTCCCTTAATACAAATTCACTGCTGGTGTCACGTGAAGGTCAGATAAGGTGGGCCCACGATCTTACGTGGCGTTTTCAAATTCATTGGATCGAATCTTCTAAAAGGCCGAAGGTATGGCCTCATGGAGTGCCCATCCAGGCACCGGGGCCTGTTGCTTTAGCTCTTCGGCCTGAGCCTCAAAAAGGTTCATTTGCCGTTCCACCCCCCGATACTCCTTGGAAGACATTAGCCGGCGAAAGGCCTCCCTTTCCTGTTCACTCGATGGATGCGGCCTACTTTGCGAATAAGGCAAACGACGTGATCCTAGATCGTTCATGTAAAGACATGCGAGGTTATCCTTTGATCTGCATACGTGAGAGTGGTCGTAAAATTCCGTTCAATAAACCTCCCATTTTGGGGATAACACTAGATGAATGGCTGGGGACATAG

Coding sequence (CDS)

ATGTCGGCAGTAAAACAGTTGGGCAAGACCCAAGTGGAACGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGAGGGAAGTCCCTGATTCGGTTCGCTTCCTAGAATCTCGTCTTGAAGAGATTGCGACGAGGACAGATAAGATCGATGCGGTAGCTGGCCGCGTGGATGGAATGCCCATCCAAGAATTGATTATGAGGGTTGAAAACCTCGAGAACAGAGCTGCGAAACCTAGTAACTTCGAGCGTGGGGACAGCTCGACGGGCTCTGCTGCCCAAATGGAGGAGCGTAACGGGGGTAGAGGTTGCGATATTCGCCCGTTGTGCCACCGGCGATCCGTTTTCAAGTTGGCTGACTTACTTGTGAGCGAAAGTAAGTGCCGCACAGTCGCTTTACGAGACCCTAAAGACCGCGACTGTGACACTCGGCCTCGGGCAATGGCTGAGGCCGATGCCATGGTCGCCCTCGGCCCACTTGCGTGGCCCAAGTTCCTCCGCCTCTGTTTGGTCTCTATTGTCCCTGGTCGTCCCGGTTCCACCTGGCCACGTCTTTCCCTTAATACAAATTCACTGCTGGTGTCACGTGAAGGTCAGATAAGGTGGGCCCACGATCTTACGTGGCGTTTTCAAATTCATTGGATCGAATCTTCTAAAAGGCCGAAGGTATGGCCTCATGGAGTGCCCATCCAGGCACCGGGGCCTGTTGCTTTAGCTCTTCGGCCTGAGCCTCAAAAAGGTTCATTTGCCGTTCCACCCCCCGATACTCCTTGGAAGACATTAGCCGGCGAAAGGCCTCCCTTTCCTGTTCACTCGATGGATGCGGCCTACTTTGCGAATAAGGCAAACGACGTGATCCTAGATCGTTCATGTAAAGACATGCGAGGTTATCCTTTGATCTGCATACGTGAGAGTGGTCGTAAAATTCCGTTCAATAAACCTCCCATTTTGGGGATAACACTAGATGAATGGCTGGGGACATAG

Protein sequence

MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEERNGGRGCDIRPLCHRRSVFKLADLLVSESKCRTVALRDPKDRDCDTRPRAMAEADAMVALGPLAWPKFLRLCLVSIVPGRPGSTWPRLSLNTNSLLVSREGQIRWAHDLTWRFQIHWIESSKRPKVWPHGVPIQAPGPVALALRPEPQKGSFAVPPPDTPWKTLAGERPPFPVHSMDAAYFANKANDVILDRSCKDMRGYPLICIRESGRKIPFNKPPILGITLDEWLGT

Homology

[Close]

BLAST of Spg001718 vs. NCBI nr
Match: TYK18977.1 (uncharacterized protein E5676_scaffold418G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 8.9e-24
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 1  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMP 60
          M +V   GK Q +RLVE+EEQMLYL +VPDS+RFLESRLEEIA +TD IDAVAGRV+G+P
Sbjct: 1  MLSVNPSGKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLP 60

Query: 61 IQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER 98
          IQEL+ RV+ LE    +  + ERGDSSTGS A +EER
Sbjct: 61 IQELLARVDTLEGIVGRTGSHERGDSSTGSVAHIEER 97

[Close]

BLAST of Spg001718 vs. NCBI nr
Match: KAA0041962.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK17897.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-23
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 1  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMP 60
          MS+V   GK Q +RLVE+EEQMLYL EVPDS+ FLES LEEIA +TD IDA+AGRV+G+P
Sbjct: 1  MSSVNPSGKAQRDRLVELEEQMLYLVEVPDSIHFLESHLEEIAEKTDMIDAIAGRVEGLP 60

Query: 61 IQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER 98
          IQ+L+ RV+ LE    +  + ERGDSSTGS A +EER
Sbjct: 61 IQKLLARVDTLEGTVGRTGSHERGDSSTGSVAHIEER 97

[Close]

BLAST of Spg001718 vs. NCBI nr
Match: KAA0046219.1 (uncharacterized protein E6C27_scaffold284G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-23
Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 1  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMP 60
          M +    GK Q +RLVE+EEQMLYL +VPDS+RFLESRLEEIA +TD IDAVAGRV+G+P
Sbjct: 1  MLSANPSGKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLP 60

Query: 61 IQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER 98
          IQEL+ RV+ LE    +  + ERGDSSTGS A +EER
Sbjct: 61 IQELLARVDTLEGIVGRTGSHERGDSSTGSVAHIEER 97

[Close]

BLAST of Spg001718 vs. NCBI nr
Match: KAA0037573.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 9.9e-23
Identity = 64/99 (64.65%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 1  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMP 60
          MS+   LGK Q +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVAGRV+G P
Sbjct: 1  MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61 IQELIMRVENLEN--RAAKPSNFERGDSSTGSAAQMEER 98
          IQEL+ RV+ LE      +  N+ERGDSSTGS A +EER
Sbjct: 61 IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEER 99

[Close]

BLAST of Spg001718 vs. NCBI nr
Match: XP_022154605.1 (uncharacterized protein LOC111021829 [Momordica charantia])

HSP 1 Score: 118.6 bits (296), Expect = 9.9e-23
Identity = 60/99 (60.61%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 1   MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMP 60
           MSA KQL K+ V+RLVEIEEQ+LYLREVPDS+R LE+R++E + +  +IDAV  RVDG+P
Sbjct: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60

Query: 61  IQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEERNG 100
           IQ++ MRVE  E++A +P +FERGDSST    Q+E R G
Sbjct: 61  IQDIAMRVETXESKATRPGSFERGDSSTNPNTQIEVRMG 99

[Close]

BLAST of Spg001718 vs. ExPASy TrEMBL
Match: A0A5D3D5Z0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00720 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.3e-24
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 1  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMP 60
          M +V   GK Q +RLVE+EEQMLYL +VPDS+RFLESRLEEIA +TD IDAVAGRV+G+P
Sbjct: 1  MLSVNPSGKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLP 60

Query: 61 IQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER 98
          IQEL+ RV+ LE    +  + ERGDSSTGS A +EER
Sbjct: 61 IQELLARVDTLEGIVGRTGSHERGDSSTGSVAHIEER 97

[Close]

BLAST of Spg001718 vs. ExPASy TrEMBL
Match: A0A5A7TEV3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001730 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.6e-24
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 1  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMP 60
          MS+V   GK Q +RLVE+EEQMLYL EVPDS+ FLES LEEIA +TD IDA+AGRV+G+P
Sbjct: 1  MSSVNPSGKAQRDRLVELEEQMLYLVEVPDSIHFLESHLEEIAEKTDMIDAIAGRVEGLP 60

Query: 61 IQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER 98
          IQ+L+ RV+ LE    +  + ERGDSSTGS A +EER
Sbjct: 61 IQKLLARVDTLEGTVGRTGSHERGDSSTGSVAHIEER 97

[Close]

BLAST of Spg001718 vs. ExPASy TrEMBL
Match: A0A5A7TY91 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00070 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 1  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMP 60
          M +    GK Q +RLVE+EEQMLYL +VPDS+RFLESRLEEIA +TD IDAVAGRV+G+P
Sbjct: 1  MLSANPSGKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLP 60

Query: 61 IQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER 98
          IQEL+ RV+ LE    +  + ERGDSSTGS A +EER
Sbjct: 61 IQELLARVDTLEGIVGRTGSHERGDSSTGSVAHIEER 97

[Close]

BLAST of Spg001718 vs. ExPASy TrEMBL
Match: A0A5D3BYE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00260 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.8e-23
Identity = 64/99 (64.65%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 1  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMP 60
          MS+   LGK Q +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVAGRV+G P
Sbjct: 1  MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61 IQELIMRVENLEN--RAAKPSNFERGDSSTGSAAQMEER 98
          IQEL+ RV+ LE      +  N+ERGDSSTGS A +EER
Sbjct: 61 IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEER 99

[Close]

BLAST of Spg001718 vs. ExPASy TrEMBL
Match: A0A5A7T3M3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002020 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.8e-23
Identity = 64/99 (64.65%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 1  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMP 60
          MS+   LGK Q +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVAGRV+G P
Sbjct: 1  MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61 IQELIMRVENLEN--RAAKPSNFERGDSSTGSAAQMEER 98
          IQEL+ RV+ LE      +  N+ERGDSSTGS A +EER
Sbjct: 61 IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEER 99

The following BLAST results are available for this feature:

BLAST of Spg001718 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18977.1	8.9e-24	65.98	uncharacterized protein E5676_scaffold418G00720 [Cucumis melo var. makuwa]	[more]
KAA0041962.1	2.0e-23	63.92	reverse transcriptase [Cucumis melo var. makuwa] >TYK17897.1 reverse transcripta...	[more]
KAA0046219.1	2.6e-23	64.95	uncharacterized protein E6C27_scaffold284G00070 [Cucumis melo var. makuwa]	[more]
KAA0037573.1	9.9e-23	64.65	reverse transcriptase [Cucumis melo var. makuwa]	[more]
XP_022154605.1	9.9e-23	60.61	uncharacterized protein LOC111021829 [Momordica charantia]	[more]

BLAST of Spg001718 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg001718 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5Z0	4.3e-24	65.98	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TEV3	9.6e-24	63.92	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]
A0A5A7TY91	1.3e-23	64.95	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BYE6	4.8e-23	64.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5A7T3M3	4.8e-23	64.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]

BLAST of Spg001718 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001718.1	Spg001718.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity