Spg001690 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg001690
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptioncysteine-rich and transmembrane domain-containing protein WIH2-like
Locationscaffold10: 817445 .. 819507 (-)
RNA-Seq ExpressionSpg001690
SyntenySpg001690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTGAAGTAAACAAAACAGAAAGGAAACGCTCAGAGCCAAATTGCTCTTTATTTCTATCATCTTCGTTCTTCGTTCTTCCTCATCTTCAATTTCTCCATTTCCATTTCCATTTCTAAAGAATTATGAGTTACCCTTATGGCTACCACCAGCCTCCGCCTGAAACCTACCCTCCTCCCGGTGAGATCCCTTCTTCTTCTTCTTCTGATTTTCCATTTCCATTTTCATTTCATCTCATTCTTTCTTCTCTTCGTAGGCTACCCTCCGCCGCAGCCTGGATATCCCGGAAATCCTCCCCCGCACCCTGGATATCCCGGCCATCCGCCGCCGCACCAAGGGTATCAAGGCTATTTCTACGATGGGTATCAGCCATCGGCCCCGCCTCCTCCTCCGCCGCCGGGCCCTCCTCCTCCGCCCTATGATTATCACCACCATCACTACGACGATCGAAATGACTGTTCCTCATTCCTTCATGGATGGTTCGTTTTCCCCATTTCTTCAATTCCTGCTCGAATGAACCAATTTTGTTGAGACGCTTTTGATTTGTAAGCTTGACTTCGTGATCTTGTTGCTTGATTCTGTTTTGTGAAATTGGATTGGATTTGAAGAGAGATGCGATGAATATTTGTGGAATTATTTGGATTCCGAATTTAGGAACTCAATTTTCCTTCCCACTGCTTATCAATGAATTTTGACCTTAGTGAAAATTTTGTCTAACAAATGATTGGTAGATCAGTTTAAAGATCAAGGGATGTAATTTAACACTTTCAATTTTGTTTGAATGCACTCTATTGAAGGGCATTTTAGAATCAAAGGGGCTATTATGAACCAGTCATTTTTGTTCTTGTTATCATGAACTAAGCAGTATTTTTCTTTATTTGGTAGGAAAAAAGAAAGGCAAATTGATCGTGTAATGTTTGATTTAGGTGCACAGAGCATCAGATGCTCTACTCTATTAATGCCACTTTATGATCCAATCCTTTTTTCCTCTTTTTTATGTTCCATAGCTTTGATAAAACCATTGAATTGGACTGTCTTTTACTCAAGTTATTATTGATGGAAGAACTTAACAATGTCGTTCGTGCTTTCGGGATTTTCTTGGCACGTAAAAGAGATTGTGGTTCTATGATGGAGGAAGCTCTTTTGAATCCTCCCTTTCGAGATAAGGGCAAAGTTTTTTGGCATGCTTGTTTTTTCGTTTTCTAGTTGGGTATCCGGCTTAAGAGGAACTATAGAATTTTTAGAGGGATTGTGAGGTCCTGAGAACAGGTGTGTGATATTGTTAGATTTTCTCCTCTTTGTGGGTGTTGTTTTTTCACGAGTTTTGTAATTATGAACTAGGTCTTATTCTTTTGGAAAGATTGGAGTTTGTTTTTGCTTAGCTAAACCTCAAACTCCTTTTGAGGCCGGTTATTGTGTATGTCCTTGTATATCTTTTTATTTTTCTCGCCGAAAGCTTGGTCCTCCTTTTGAGGGCTAAGTCATTCTCGCTGTTGTGAGTCCATTATCTCTAATTTTGTTCTGATGCAATATGCAACTTGGTTTTGCATTTTTCTCCTTTATCCATGTCATTACTATGTGTTTTAACGTTCTAGAGAACGAGATAGCTGAAGAAGCCCGCTCTCCTTCGGGCGGGTTCTGTTGGTTTCTTTCCCTTTCTCATTGGGTGGAGGATTTGTTAGAACTTGGATGCTTCCTTTTTGAGTTCTTTGAGGTTTAATGAATGTTCCTTTTTTCAAAAGAAAAAGAACATTTAACAAGTTCACTTTCTAGCTATGGGTAGTTTCTTAGCACTTACCCAAGCTTATGCCATTCTCCTCCCATGGATGCCGAAATATTAGACTAAGTTGATTGATTTTGTAAACAAGTAATCATGGACAACCGAGATTTGTCGTGCCTGAGACGTGTTAAACAACCACGATCACGAGTATATCATAAATTTGAGCATTCGTTGTACGATCCTTCATGTGGCTTTGTTTAGCTTTTACAAAGAAATATGGGGAAGCAAGTATGGATTCATGAAACTTAATGTTATCTGTGATGATAACCTAACCTTGACTAACTG

mRNA sequence

ATGAGTTACCCTTATGGCTACCACCAGCCTCCGCCTGAAACCTACCCTCCTCCCGGCTACCCTCCGCCGCAGCCTGGATATCCCGGAAATCCTCCCCCGCACCCTGGATATCCCGGCCATCCGCCGCCGCACCAAGGGTATCAAGGCTATTTCTACGATGGGTATCAGCCATCGGCCCCGCCTCCTCCTCCGCCGCCGGGCCCTCCTCCTCCGCCCTATGATTATCACCACCATCACTACGACGATCGAAATGACTGTTCCTCATTCCTTCATGGATGGTTCGTTTTCCCCATTTCTTCAATTCCTGCTCGAATGAACCAATTTTGTTGA

Coding sequence (CDS)

ATGAGTTACCCTTATGGCTACCACCAGCCTCCGCCTGAAACCTACCCTCCTCCCGGCTACCCTCCGCCGCAGCCTGGATATCCCGGAAATCCTCCCCCGCACCCTGGATATCCCGGCCATCCGCCGCCGCACCAAGGGTATCAAGGCTATTTCTACGATGGGTATCAGCCATCGGCCCCGCCTCCTCCTCCGCCGCCGGGCCCTCCTCCTCCGCCCTATGATTATCACCACCATCACTACGACGATCGAAATGACTGTTCCTCATTCCTTCATGGATGGTTCGTTTTCCCCATTTCTTCAATTCCTGCTCGAATGAACCAATTTTGTTGA

Protein sequence

MSYPYGYHQPPPETYPPPGYPPPQPGYPGNPPPHPGYPGHPPPHQGYQGYFYDGYQPSAPPPPPPPGPPPPPYDYHHHHYDDRNDCSSFLHGWFVFPISSIPARMNQFC
Homology
BLAST of Spg001690 vs. NCBI nr
Match: KAG6581126.1 (hypothetical protein SDJN03_21128, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.7 bits (361), Expect = 9.6e-31
Identity = 74/92 (80.43%), Postives = 78/92 (84.78%), Query Frame = 0

Query: 1  MSYPYGYHQPPPETYPPPGYPPPQPGYPGNPPPHPGYPGHPPPHQGYQGYFYDGYQPSAP 60
          M+YPYGY  PPPETYPPPGY PPQPGYPG+ P     P  PPPHQGYQGYFYDGY PSAP
Sbjct: 1  MNYPYGYQHPPPETYPPPGYRPPQPGYPGHQPLP---PPPPPPHQGYQGYFYDGYSPSAP 60

Query: 61 PPPPPPGPPPPPYDYHHHHYDDRNDCSSFLHG 93
          PPPPPPGPPPPPY + H+HYDDRNDCSSFLHG
Sbjct: 61 PPPPPPGPPPPPYCHQHYHYDDRNDCSSFLHG 89

BLAST of Spg001690 vs. NCBI nr
Match: XP_038879833.1 (cysteine-rich and transmembrane domain-containing protein WIH2 [Benincasa hispida])

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-30
Identity = 74/92 (80.43%), Postives = 77/92 (83.70%), Query Frame = 0

Query: 1  MSYPYGYHQPPPETYPPPGYPPPQPGYPGNPPPHPGYPGHPPPHQGYQGYFYDGYQPSAP 60
          MSYPYGYHQPPPETYPPPGYPPPQPGYPG+ PP       PPPHQGYQGYFYDGYQPSAP
Sbjct: 1  MSYPYGYHQPPPETYPPPGYPPPQPGYPGHQPP------PPPPHQGYQGYFYDGYQPSAP 60

Query: 61 PPPPPPGPPPPPYDYHHHHYDDRNDCSSFLHG 93
          PP     PPPPPY + H+HYDDRNDCSSFLHG
Sbjct: 61 PP-----PPPPPYHHQHYHYDDRNDCSSFLHG 81

BLAST of Spg001690 vs. NCBI nr
Match: XP_022934109.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita moschata] >XP_022983676.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita maxima] >XP_023527083.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita pepo subsp. pepo] >KAG7017860.1 hypothetical protein SDJN02_19726 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.9 bits (359), Expect = 1.6e-30
Identity = 73/92 (79.35%), Postives = 77/92 (83.70%), Query Frame = 0

Query: 1  MSYPYGYHQPPPETYPPPGYPPPQPGYPGNPPPHPGYPGHPPPHQGYQGYFYDGYQPSAP 60
          M+YPYGY  PPPETYPPPGY PPQPGYPG+ P        PPPHQGYQGYFYDGY PSAP
Sbjct: 1  MNYPYGYQHPPPETYPPPGYRPPQPGYPGHQPL------PPPPHQGYQGYFYDGYSPSAP 60

Query: 61 PPPPPPGPPPPPYDYHHHHYDDRNDCSSFLHG 93
          PPPPPPGPPPPPY + H+HYDDRNDCSSFLHG
Sbjct: 61 PPPPPPGPPPPPYCHQHYHYDDRNDCSSFLHG 86

BLAST of Spg001690 vs. NCBI nr
Match: KAG7022631.1 (hypothetical protein SDJN02_16365 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.5 bits (358), Expect = 2.1e-30
Identity = 71/93 (76.34%), Postives = 76/93 (81.72%), Query Frame = 0

Query: 1  MSYPYGYHQPPPETYPPPGYPPPQPGYPGNPPPHPGYPGHPPPHQGYQGYFYDGYQPSAP 60
          MSYPY +H  PPETYPPPGYPPPQPGYPGNP         PPPHQGYQ YFYDGYQPSAP
Sbjct: 1  MSYPYSHHHTPPETYPPPGYPPPQPGYPGNP---------PPPHQGYQDYFYDGYQPSAP 60

Query: 61 PPPPPPGPPPPPYDYHHHHYDDRNDCSSFLHGW 94
           PPPPPGPPPPPY + H+HYDDR++CSSFL GW
Sbjct: 61 LPPPPPGPPPPPYHHQHYHYDDRDECSSFLRGW 84

BLAST of Spg001690 vs. NCBI nr
Match: TYK27230.1 (cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 3.6e-30
Identity = 73/93 (78.49%), Postives = 77/93 (82.80%), Query Frame = 0

Query: 1   MSYPYGYHQPPPETYPPPGYPPPQPGYPGNPPPHPGYPGHPPPHQGYQGYFYDGYQPSAP 60
           MSY YGY+ PPPETYPPPGYPPPQPGYPG+ PP       PPPHQGYQGYFYDGYQPSAP
Sbjct: 48  MSYSYGYNNPPPETYPPPGYPPPQPGYPGHQPP------PPPPHQGYQGYFYDGYQPSAP 107

Query: 61  PPPPPPGPPPPPYDYHHHHYDDRNDCSSFLHGW 94
           PPP    PPPPPY + H+HYDDRNDCSSFLHGW
Sbjct: 108 PPP----PPPPPYHHQHYHYDDRNDCSSFLHGW 130

BLAST of Spg001690 vs. ExPASy TrEMBL
Match: A0A6J1J313 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita maxima OX=3661 GN=LOC111482221 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 7.9e-31
Identity = 73/92 (79.35%), Postives = 77/92 (83.70%), Query Frame = 0

Query: 1  MSYPYGYHQPPPETYPPPGYPPPQPGYPGNPPPHPGYPGHPPPHQGYQGYFYDGYQPSAP 60
          M+YPYGY  PPPETYPPPGY PPQPGYPG+ P        PPPHQGYQGYFYDGY PSAP
Sbjct: 1  MNYPYGYQHPPPETYPPPGYRPPQPGYPGHQPL------PPPPHQGYQGYFYDGYSPSAP 60

Query: 61 PPPPPPGPPPPPYDYHHHHYDDRNDCSSFLHG 93
          PPPPPPGPPPPPY + H+HYDDRNDCSSFLHG
Sbjct: 61 PPPPPPGPPPPPYCHQHYHYDDRNDCSSFLHG 86

BLAST of Spg001690 vs. ExPASy TrEMBL
Match: A0A6J1F1N0 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita moschata OX=3662 GN=LOC111441381 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 7.9e-31
Identity = 73/92 (79.35%), Postives = 77/92 (83.70%), Query Frame = 0

Query: 1  MSYPYGYHQPPPETYPPPGYPPPQPGYPGNPPPHPGYPGHPPPHQGYQGYFYDGYQPSAP 60
          M+YPYGY  PPPETYPPPGY PPQPGYPG+ P        PPPHQGYQGYFYDGY PSAP
Sbjct: 1  MNYPYGYQHPPPETYPPPGYRPPQPGYPGHQPL------PPPPHQGYQGYFYDGYSPSAP 60

Query: 61 PPPPPPGPPPPPYDYHHHHYDDRNDCSSFLHG 93
          PPPPPPGPPPPPY + H+HYDDRNDCSSFLHG
Sbjct: 61 PPPPPPGPPPPPYCHQHYHYDDRNDCSSFLHG 86

BLAST of Spg001690 vs. ExPASy TrEMBL
Match: A0A5A7VHS2 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00060 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.8e-30
Identity = 73/93 (78.49%), Postives = 77/93 (82.80%), Query Frame = 0

Query: 1   MSYPYGYHQPPPETYPPPGYPPPQPGYPGNPPPHPGYPGHPPPHQGYQGYFYDGYQPSAP 60
           MSY YGY+ PPPETYPPPGYPPPQPGYPG+ PP       PPPHQGYQGYFYDGYQPSAP
Sbjct: 48  MSYSYGYNHPPPETYPPPGYPPPQPGYPGHQPP------PPPPHQGYQGYFYDGYQPSAP 107

Query: 61  PPPPPPGPPPPPYDYHHHHYDDRNDCSSFLHGW 94
           PPP    PPPPPY + H+HYDDRNDCSSFLHGW
Sbjct: 108 PPP----PPPPPYHHQHYHYDDRNDCSSFLHGW 130

BLAST of Spg001690 vs. ExPASy TrEMBL
Match: A0A5D3DVB2 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G001150 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.8e-30
Identity = 73/93 (78.49%), Postives = 77/93 (82.80%), Query Frame = 0

Query: 1   MSYPYGYHQPPPETYPPPGYPPPQPGYPGNPPPHPGYPGHPPPHQGYQGYFYDGYQPSAP 60
           MSY YGY+ PPPETYPPPGYPPPQPGYPG+ PP       PPPHQGYQGYFYDGYQPSAP
Sbjct: 48  MSYSYGYNNPPPETYPPPGYPPPQPGYPGHQPP------PPPPHQGYQGYFYDGYQPSAP 107

Query: 61  PPPPPPGPPPPPYDYHHHHYDDRNDCSSFLHGW 94
           PPP    PPPPPY + H+HYDDRNDCSSFLHGW
Sbjct: 108 PPP----PPPPPYHHQHYHYDDRNDCSSFLHGW 130

BLAST of Spg001690 vs. ExPASy TrEMBL
Match: A0A6J1EL88 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita moschata OX=3662 GN=LOC111435344 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.5e-29
Identity = 70/92 (76.09%), Postives = 75/92 (81.52%), Query Frame = 0

Query: 1  MSYPYGYHQPPPETYPPPGYPPPQPGYPGNPPPHPGYPGHPPPHQGYQGYFYDGYQPSAP 60
          MSYPY +H  PPETYPPPGYPPPQPGYPGNP         PPPHQGYQ YFYDGYQPSAP
Sbjct: 1  MSYPYSHHHTPPETYPPPGYPPPQPGYPGNP---------PPPHQGYQDYFYDGYQPSAP 60

Query: 61 PPPPPPGPPPPPYDYHHHHYDDRNDCSSFLHG 93
           PPPPPGPPPPPY + H+HYDDR++CSSFL G
Sbjct: 61 LPPPPPGPPPPPYHHQHYHYDDRDECSSFLRG 83

BLAST of Spg001690 vs. TAIR 10
Match: AT1G12810.1 (proline-rich family protein )

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-08
Identity = 50/112 (44.64%), Postives = 57/112 (50.89%), Query Frame = 0

Query: 7   YHQPPPETYPPPGY-----------PPPQPGYPGNPPPHPGYP------GHPPPHQ---- 66
           Y + PPE+YPPPGY            PP PGYP  P  H GYP      G+PPP      
Sbjct: 3   YDRVPPESYPPPGYQSHYPPPGYPSAPPPPGYPSPPSHHEGYPPPQPYGGYPPPSSRPYE 62

Query: 67  -GYQGYFYDGYQPSAPPPPPPPGPPPPPYDY----HHHHYDDRNDCSSFLHG 93
            GYQGYF  G  P     PPPP PPP  YD+    HHH+ D  + C SF+ G
Sbjct: 63  GGYQGYFAGGGYPHQHHGPPPP-PPPQNYDHCHHDHHHYQDSDSGCFSFIRG 113

BLAST of Spg001690 vs. TAIR 10
Match: AT1G12810.2 (proline-rich family protein )

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-08
Identity = 50/112 (44.64%), Postives = 57/112 (50.89%), Query Frame = 0

Query: 7   YHQPPPETYPPPGY-----------PPPQPGYPGNPPPHPGYP------GHPPPHQ---- 66
           Y + PPE+YPPPGY            PP PGYP  P  H GYP      G+PPP      
Sbjct: 3   YDRVPPESYPPPGYQSHYPPPGYPSAPPPPGYPSPPSHHEGYPPPQPYGGYPPPSSRPYE 62

Query: 67  -GYQGYFYDGYQPSAPPPPPPPGPPPPPYDY----HHHHYDDRNDCSSFLHG 93
            GYQGYF  G  P     PPPP PPP  YD+    HHH+ D  + C SF+ G
Sbjct: 63  GGYQGYFAGGGYPHQHHGPPPP-PPPQNYDHCHHDHHHYQDSDSGCFSFIRG 113

BLAST of Spg001690 vs. TAIR 10
Match: AT3G49845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 8.1e-04
Identity = 47/98 (47.96%), Postives = 51/98 (52.04%), Query Frame = 0

Query: 4   PYGYHQPPPETYPPPGYPPPQPGYPGNPPPHPGYP--GHPPPHQGY-QGYFYDGYQP--- 63
           P GY  PP E YPP GYPPP  GYP    P  GYP  G+PPP QGY QGY   GY P   
Sbjct: 15  PQGY--PPKEGYPPAGYPPP-AGYPPPQYPQAGYPPAGYPPPQQGYGQGYPAQGYPPPQY 74

Query: 64  --SAPPPPPPPGPPPPPY-DYHHHHYDDRNDCSSFLHG 93
               PP  P  GPPPP Y      +  D+ D   F+ G
Sbjct: 75  PQGHPPQYPYQGPPPPHYGQAPPKNKKDKKDSGGFMEG 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6581126.19.6e-3180.43hypothetical protein SDJN03_21128, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038879833.11.3e-3080.43cysteine-rich and transmembrane domain-containing protein WIH2 [Benincasa hispid... [more]
XP_022934109.11.6e-3079.35cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita m... [more]
KAG7022631.12.1e-3076.34hypothetical protein SDJN02_16365 [Cucurbita argyrosperma subsp. argyrosperma][more]
TYK27230.13.6e-3078.49cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo v... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1J3137.9e-3179.35cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita... [more]
A0A6J1F1N07.9e-3179.35cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita... [more]
A0A5A7VHS21.8e-3078.49Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo... [more]
A0A5D3DVB21.8e-3078.49Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo... [more]
A0A6J1EL881.5e-2976.09cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita... [more]
Match NameE-valueIdentityDescription
AT1G12810.11.9e-0844.64proline-rich family protein [more]
AT1G12810.21.9e-0844.64proline-rich family protein [more]
AT3G49845.18.1e-0447.96unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg001690.1Spg001690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane