Spg001673 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001673
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	nuclear pore complex protein GP210 isoform X2
Location	scaffold10: 2328404 .. 2330484 (-)
RNA-Seq Expression	Spg001673
Synteny	Spg001673

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGGTAGTATTTGGGAATATTTAAAAAGTAGTATTTGGGAATATTGAAGCTTACTGGATATCTACTCATTAATTTTATTTCTTGGATTTCTCGAAGGATCCAATATTTTTCACTCACTTTGTGTTCTTTTTTATTCTCTTTTAAGTGCATCAGAAATCGTGTCCCAATTTTCACGCAATATTCCCTTGGTTGATGTATCGTGTTATATATCTTCATCTTTTCATCAATAAGTGTCTCACTTAGTCTGGGTATTTGTTATCAGGTCGCCCAGATAAGACTAACAAATAAGGAATTTCCTTTCCATGTGATTAATCTTGCCGTCGGTACCAAACTTCGCCTTCCAATAAGCTACTATGATTCTCTAGGTACCAATTTTATGTGTAAATCTTTTGTCATTTTATATGCTTTGATATTCATTTCTTATAGATCATATCTGACAATGTTCTTAACCAGGCAATCTCTTTCATGAGGCTCGTGATGTTGTTCTCCTTTATGTGGAAACTAACTATCCAGATATTGTTTCCGTTAATTACTCAAGAGAAGGCAATGGATATATTTATTTGAAGGTCTGTGAAATACCATCTTTATATGAAAATTTATTAACTTGTACTGTACACGATACATCTATCTATATAGTCTACAAAATTTTCAAATGGGCAGCTCTGGGAGGAGAGATATTTGCTCCTACTTCAGTATTTGTTTATTTATTTTTAATAATCACTTGATCAGTCTTGTTAATTAAGAAATGCTAGCTTCTTTTAGAATCAGTTTGATCGGCTTTTTCTTTTGTTTTAAAAAAAAAATCATCAAGCCCTGGTCAAGCCCTTATTTGATTTTCTTAGATAACGAAGGTTTCATATTCTCAACATGATTCTTTGAAGTTGTCCGTTAGAAGAAACCTCAGTGTCCTTGAGATCTATGTATTCTATTCTTGTATGCTTCTTTTTCATGATTTACATCTCTCCCTATTTGTTGATGAGAAATGTAAGGATCCCAATGATTCATCTTCTTGAAAATCCTCCTGTTTTTAGAGTCATCCCAATAATTCATATCCTTGAGCTTTCTCATATTCTTCTTCTCTTGTTATTTCAGCATACAAATAAATTTTTTTTTCTATATAAAAAAATTATTCTATTAGAAGAATTCTAAACCACATGCAACTCACGTAATAGTTGACTGTATGTATATGTTGGCAATTGATTAAATTTTCAAGTTAACCCATATTTAGCTGTAGATCTGTTGTGACTTCTTCTTCCAATGTTGAAGGCAAGGCAACATGGTAGAGCTCTAGTCCAAGTAACGATTGACAAGAATCCAGAAAAGTCAGACTATATATTGGTATGGCTGTACCTTGGTCCCCTTCTTTTTAATTTGTAAAGTAGTTATGTGCATTCTACCATTAAGAGTGAGTATATTTTTAGACAGAGGGGAAGAGAGAGAGAGCGTCAAAGTTTTTGACGGAAGAAAACCTAATAAATCAATGTGTTTTACATGCTCGTGGTTTTCTCCTTGTTTGAGGTCCTTTAAAACCTAATCAATGAAATTGGCAGTTTTAGGACACAAATCAACATTCAGAACTCTCTTACACTTTCATCTCGTAAGTTACATGGACAGCTAAGAATATGTCTTTCAAGTTGGAGTTTTTTAACTTCTTTCTAGTAAGAGTTGTTTAATTTTCAGTTTTGCTTAAATATACTTTATGTTTCTTGCTTATTGTGGTGTGGGCAGTGTTGTTCAATGTATCTCTTTTAGGTTTTTGGGCTGTTTTTCGTATCTGCAAATTAGAGTTTGTACATTTTCATTTCATCCACGAAAAGTACTGTTTCATTTAAAAAAAAATAAATGGTACTCATGGAGATTTATAGGTGCAAGCCTTTTATGCAAGTTATATCCTGCCACGATTTCTCTATGCCCTGAATCTCATTGTTCTCCAGATTTCAGTTGGTGCGCTAATACATCCTCAAGACCCAGTAATGCATGTCGGTAGTCATATCAACTTCGGTATAAAAGGTCAGTATCATGTGAGAATTGAATTGAGAACATCAGATTTTCTTCTTGATAAACTGCAAGTATAA

mRNA sequence

ATGGGGAAGGTCGCCCAGATAAGACTAACAAATAAGGAATTTCCTTTCCATGTGATTAATCTTGCCGTCGGTACCAAACTTCGCCTTCCAATAAGCTACTATGATTCTCTAGGCAATCTCTTTCATGAGGCTCGTGATGTTGTTCTCCTTTATGTGGAAACTAACTATCCAGATATTGTTTCCGTTAATTACTCAAGAGAAGGCAATGGATATATTTATTTGAAGGCAAGGCAACATGGTAGAGCTCTAGTCCAAGTAACGATTGACAAGAATCCAGAAAAGTCAGACTATATATTGATTTCAGTTGGTGCGCTAATACATCCTCAAGACCCAGTAATGCATGTCGGTAGTCATATCAACTTCGGTATAAAAGGTCAGTATCATGTGAGAATTGAATTGAGAACATCAGATTTTCTTCTTGATAAACTGCAAGTATAA

Coding sequence (CDS)

ATGGGGAAGGTCGCCCAGATAAGACTAACAAATAAGGAATTTCCTTTCCATGTGATTAATCTTGCCGTCGGTACCAAACTTCGCCTTCCAATAAGCTACTATGATTCTCTAGGCAATCTCTTTCATGAGGCTCGTGATGTTGTTCTCCTTTATGTGGAAACTAACTATCCAGATATTGTTTCCGTTAATTACTCAAGAGAAGGCAATGGATATATTTATTTGAAGGCAAGGCAACATGGTAGAGCTCTAGTCCAAGTAACGATTGACAAGAATCCAGAAAAGTCAGACTATATATTGATTTCAGTTGGTGCGCTAATACATCCTCAAGACCCAGTAATGCATGTCGGTAGTCATATCAACTTCGGTATAAAAGGTCAGTATCATGTGAGAATTGAATTGAGAACATCAGATTTTCTTCTTGATAAACTGCAAGTATAA

Protein sequence

MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQDPVMHVGSHINFGIKGQYHVRIELRTSDFLLDKLQV

Homology

[Close]

BLAST of Spg001673 vs. NCBI nr
Match: KAG6581051.1 (Nuclear pore complex protein 210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 234.6 bits (597), Expect = 5.5e-58
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1    MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIV 60
            + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIV
Sbjct: 2088 VAEVAQIRLTNQEFPFHVINLAVDTELRLPISYYDSLGNLFHEAHDVVLFYVETNYPDIV 2147

Query: 61   SVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQDPVMHVGSHIN 120
            SVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILISVGALIHPQDPV+ VGSH+N
Sbjct: 2148 SVNYSREGNGYIYLKARQHGRALVQVSIDKNPEKSDYILISVGALIHPQDPVILVGSHLN 2207

Query: 121  FGIKG 126
            F IKG
Sbjct: 2208 FSIKG 2212

[Close]

BLAST of Spg001673 vs. NCBI nr
Match: XP_022934340.1 (nuclear pore complex protein GP210 isoform X1 [Cucurbita moschata])

HSP 1 Score: 234.6 bits (597), Expect = 5.5e-58
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1    MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIV 60
            + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIV
Sbjct: 1460 VAEVAQIRLTNQEFPFHVINLAVDTELRLPISYYDSLGNLFHEAHDVVLFYVETNYPDIV 1519

Query: 61   SVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQDPVMHVGSHIN 120
            SVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILISVGALIHPQDPV+ VGSH+N
Sbjct: 1520 SVNYSREGNGYIYLKARQHGRALVQVSIDKNPEKSDYILISVGALIHPQDPVILVGSHLN 1579

Query: 121  FGIKG 126
            F IKG
Sbjct: 1580 FSIKG 1584

[Close]

BLAST of Spg001673 vs. NCBI nr
Match: KAG7017783.1 (Nuclear pore complex protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234.6 bits (597), Expect = 5.5e-58
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1    MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIV 60
            + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIV
Sbjct: 1489 VAEVAQIRLTNQEFPFHVINLAVDTELRLPISYYDSLGNLFHEAHDVVLFYVETNYPDIV 1548

Query: 61   SVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQDPVMHVGSHIN 120
            SVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILISVGALIHPQDPV+ VGSH+N
Sbjct: 1549 SVNYSREGNGYIYLKARQHGRALVQVSIDKNPEKSDYILISVGALIHPQDPVILVGSHLN 1608

Query: 121  FGIKG 126
            F IKG
Sbjct: 1609 FSIKG 1613

[Close]

BLAST of Spg001673 vs. NCBI nr
Match: XP_022934341.1 (nuclear pore complex protein GP210 isoform X2 [Cucurbita moschata])

HSP 1 Score: 234.6 bits (597), Expect = 5.5e-58
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1    MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIV 60
            + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIV
Sbjct: 1227 VAEVAQIRLTNQEFPFHVINLAVDTELRLPISYYDSLGNLFHEAHDVVLFYVETNYPDIV 1286

Query: 61   SVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQDPVMHVGSHIN 120
            SVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILISVGALIHPQDPV+ VGSH+N
Sbjct: 1287 SVNYSREGNGYIYLKARQHGRALVQVSIDKNPEKSDYILISVGALIHPQDPVILVGSHLN 1346

Query: 121  FGIKG 126
            F IKG
Sbjct: 1347 FSIKG 1351

[Close]

BLAST of Spg001673 vs. NCBI nr
Match: XP_023528997.1 (LOW QUALITY PROTEIN: nuclear pore complex protein GP210 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.6 bits (597), Expect = 5.5e-58
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1    MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIV 60
            + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIV
Sbjct: 1463 VAEVAQIRLTNQEFPFHVINLAVDTELRLPISYYDSLGNLFHEAHDVVLFYVETNYPDIV 1522

Query: 61   SVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQDPVMHVGSHIN 120
            SVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILISVGALIHPQDPV+ VGSH+N
Sbjct: 1523 SVNYSREGNGYIYLKARQHGRALVQVSIDKNPEKSDYILISVGALIHPQDPVIIVGSHLN 1582

Query: 121  FGIKG 126
            F IKG
Sbjct: 1583 FSIKG 1587

[Close]

BLAST of Spg001673 vs. ExPASy Swiss-Prot
Match: F4KHD8 (Nuclear pore complex protein GP210 OS=Arabidopsis thaliana OX=3702 GN=GB210 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-28
Identity = 62/125 (49.60%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 1    MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIV 60
            + +VAQIR+ ++  PFHVI+LAVG +L LPI+YYD+LG  F EA  V    VETN+ D+V
Sbjct: 1432 VAEVAQIRMKSEGIPFHVIDLAVGGELELPINYYDTLGIPFLEAHGVTTYNVETNHRDVV 1491

Query: 61   SVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQDPVMHVGSHIN 120
             +    +     Y+K  +HG+AL++V+I  N  KSDY+L+SVGA I PQ+PV+H G+ +N
Sbjct: 1492 FIKTVND-QPSAYIKGIKHGKALIRVSIGDNLRKSDYVLVSVGAHIFPQNPVIHTGNLLN 1551

Query: 121  FGIKG 126
            F I G
Sbjct: 1552 FSITG 1555

[Close]

BLAST of Spg001673 vs. ExPASy TrEMBL
Match: A0A6J1F7E5 (nuclear pore complex protein GP210 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441535 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.7e-58
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1    MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIV 60
            + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIV
Sbjct: 1460 VAEVAQIRLTNQEFPFHVINLAVDTELRLPISYYDSLGNLFHEAHDVVLFYVETNYPDIV 1519

Query: 61   SVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQDPVMHVGSHIN 120
            SVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILISVGALIHPQDPV+ VGSH+N
Sbjct: 1520 SVNYSREGNGYIYLKARQHGRALVQVSIDKNPEKSDYILISVGALIHPQDPVILVGSHLN 1579

Query: 121  FGIKG 126
            F IKG
Sbjct: 1580 FSIKG 1584

[Close]

BLAST of Spg001673 vs. ExPASy TrEMBL
Match: A0A6J1F1J2 (nuclear pore complex protein GP210 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441535 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.7e-58
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1    MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIV 60
            + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIV
Sbjct: 1227 VAEVAQIRLTNQEFPFHVINLAVDTELRLPISYYDSLGNLFHEAHDVVLFYVETNYPDIV 1286

Query: 61   SVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQDPVMHVGSHIN 120
            SVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILISVGALIHPQDPV+ VGSH+N
Sbjct: 1287 SVNYSREGNGYIYLKARQHGRALVQVSIDKNPEKSDYILISVGALIHPQDPVILVGSHLN 1346

Query: 121  FGIKG 126
            F IKG
Sbjct: 1347 FSIKG 1351

[Close]

BLAST of Spg001673 vs. ExPASy TrEMBL
Match: A0A6J1J529 (nuclear pore complex protein GP210 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481382 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.3e-57
Identity = 111/125 (88.80%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1    MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIV 60
            + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIV
Sbjct: 1460 VAEVAQIRLTNQEFPFHVINLAVDTELRLPISYYDSLGNLFHEAHDVVLFYVETNYPDIV 1519

Query: 61   SVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQDPVMHVGSHIN 120
            SVNY REGNGYIYLKARQHGRALVQV+IDKNPEKSDYILISVGALIHPQDPV+ VGSH+N
Sbjct: 1520 SVNYLREGNGYIYLKARQHGRALVQVSIDKNPEKSDYILISVGALIHPQDPVILVGSHLN 1579

Query: 121  FGIKG 126
            F IKG
Sbjct: 1580 FSIKG 1584

[Close]

BLAST of Spg001673 vs. ExPASy TrEMBL
Match: A0A6J1J4U8 (nuclear pore complex protein GP210 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481382 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.3e-57
Identity = 111/125 (88.80%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1    MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIV 60
            + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIV
Sbjct: 1227 VAEVAQIRLTNQEFPFHVINLAVDTELRLPISYYDSLGNLFHEAHDVVLFYVETNYPDIV 1286

Query: 61   SVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQDPVMHVGSHIN 120
            SVNY REGNGYIYLKARQHGRALVQV+IDKNPEKSDYILISVGALIHPQDPV+ VGSH+N
Sbjct: 1287 SVNYLREGNGYIYLKARQHGRALVQVSIDKNPEKSDYILISVGALIHPQDPVILVGSHLN 1346

Query: 121  FGIKG 126
            F IKG
Sbjct: 1347 FSIKG 1351

[Close]

BLAST of Spg001673 vs. ExPASy TrEMBL
Match: A0A1S4E5N1 (nuclear pore complex protein GP210 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502678 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.8e-55
Identity = 105/123 (85.37%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 3    KVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSV 62
            +V QIRLTN+EFPFHVINLAV T+LR+PI+Y+DSLGN+FHEA DVVL YVETNYPDIVSV
Sbjct: 1304 EVTQIRLTNQEFPFHVINLAVDTELRIPINYHDSLGNIFHEAHDVVLSYVETNYPDIVSV 1363

Query: 63   NYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQDPVMHVGSHINFG 122
            NYS E NGYIYLKAR+HGRALVQV+IDKNPEKSDYILISVGALIHPQDPV+HVGSH+NF 
Sbjct: 1364 NYSSEDNGYIYLKARKHGRALVQVSIDKNPEKSDYILISVGALIHPQDPVIHVGSHLNFS 1423

Query: 123  IKG 126
            IKG
Sbjct: 1424 IKG 1426

[Close]

BLAST of Spg001673 vs. TAIR 10
Match: AT5G40480.1 (embryo defective 3012 )

HSP 1 Score: 125.6 bits (314), Expect = 3.3e-29
Identity = 62/125 (49.60%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 1    MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIV 60
            + +VAQIR+ ++  PFHVI+LAVG +L LPI+YYD+LG  F EA  V    VETN+ D+V
Sbjct: 1432 VAEVAQIRMKSEGIPFHVIDLAVGGELELPINYYDTLGIPFLEAHGVTTYNVETNHRDVV 1491

Query: 61   SVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQDPVMHVGSHIN 120
             +    +     Y+K  +HG+AL++V+I  N  KSDY+L+SVGA I PQ+PV+H G+ +N
Sbjct: 1492 FIKTVND-QPSAYIKGIKHGKALIRVSIGDNLRKSDYVLVSVGAHIFPQNPVIHTGNLLN 1551

Query: 121  FGIKG 126
            F I G
Sbjct: 1552 FSITG 1555

The following BLAST results are available for this feature:

BLAST of Spg001673 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581051.1	5.5e-58	89.60	Nuclear pore complex protein 210, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022934340.1	5.5e-58	89.60	nuclear pore complex protein GP210 isoform X1 [Cucurbita moschata]	[more]
KAG7017783.1	5.5e-58	89.60	Nuclear pore complex protein, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022934341.1	5.5e-58	89.60	nuclear pore complex protein GP210 isoform X2 [Cucurbita moschata]	[more]
XP_023528997.1	5.5e-58	89.60	LOW QUALITY PROTEIN: nuclear pore complex protein GP210 [Cucurbita pepo subsp. p...	[more]

BLAST of Spg001673 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KHD8	4.7e-28	49.60	Nuclear pore complex protein GP210 OS=Arabidopsis thaliana OX=3702 GN=GB210 PE=1...	[more]

BLAST of Spg001673 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F7E5	2.7e-58	89.60	nuclear pore complex protein GP210 isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1F1J2	2.7e-58	89.60	nuclear pore complex protein GP210 isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1J529	1.3e-57	88.80	nuclear pore complex protein GP210 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1J4U8	1.3e-57	88.80	nuclear pore complex protein GP210 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A1S4E5N1	2.8e-55	85.37	nuclear pore complex protein GP210 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]

BLAST of Spg001673 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40480.1	3.3e-29	49.60	embryo defective 3012	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23019:SF0	NUCLEAR PORE MEMBRANE GLYCOPROTEIN 210	coord: 3..125
None	No IPR available	PANTHER	PTHR23019	NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED	coord: 3..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001673.1	Spg001673.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding