Spg001636 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001636
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	zf-RVT domain-containing protein
Location	scaffold10: 2331718 .. 2333033 (+)
RNA-Seq Expression	Spg001636
Synteny	Spg001636

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGAGGAGTTCCTCCTCCATCCGCCGATTCGTGAGGAGGCGAGATTTTTGCGGCAAGCAGGGATGTGTGATTTGATGTGGAATCTTTGGGGGGAAAGAAATAATAGAGTTTTTAGGGGAAGGGAGAGAGACTCAGATGATGTGTGGTCTCTCACTAGATTTCATGTATCTCTTTGGGCATCAGTTTCTAAGGTGTTTTGTAATTATCTGTTAGGCCTTATTTTGCTTGACTGGGATCCTGTTAGGGACCAACGTAGTATGGGATGCATTTGTCCCACATTGGAAAGATATGGGCTCCTAATGGGGTATTATATAAGTGGTTGGTTCTCCCTCCCCAATCGCCTTGCTTTTGGGGTGTGGCTCTCCAACTACTTAGATACCTAACAATTGGTATCAGAGCCGGTGGTCGACGACTTCGGAGAGGAGTGACGGCGGAGGGGTTGACCGGAACCAGCTGAGTGAAGCGTCGCCGTGCACAGCCGTCGAGACGTCGGCTTTCCGGGGAGGGGCAATTGTTAGGGACCAAGGTAGTATGGAATGCCTTTGTCCCACATTGGAAAGATATGGGCTCCTAATGGGGTATATATATGGGTTGGTTCTCCCTCCCCAATCGCCTGGCTTTTGGGGTGTGGCTCTCCAACTACTTAGATACCTAACAGATCCCTTTCTATAGGAGGATCCCCTTTTGTGGGCTTGTTTTTTTTTTGTATGCCCGTGTATTCTTTCATTTTTTTCTCAATGAAAGTTGGATCTTTATCAAAAGAAAAAGTGTCCTTGAAAGTTCTAAAAGGGGGAAATGAGGTATCCCACCACACGAAAAGTATTATAAAAAGGACTTTCGAAGATTTGCACAAAATCATGATTACAGAATGTTAACTGGTGAGAAACCTCCAATTTCAAAAGTGTACATTAGAAGGGGTAGAAAAGGTAGTGATATAGCTTTTAGTTAGTTTTGGACAGCACAATAACTGTTATCGGAACTTGTTTGTGGGGGGGATAGGAAAGTGATAATCCAACATCTTTCCTTGCTTATATTTGGCCAAATTAGAATGAAATTCATGCTTTTATTTTTGCTTTAGTGAGTTTGTTGTCAAATTTAGTTAGGAGTCGATTTTTTTTCATCTTGTTATTTATCCTTTTCATTTATTTTACTTTTTTTTTTTTGAAACTTTATTTATTTTACTTAATTACTCTTTTTATGTTAATTTCATAATCGTAGTTTTAGTTGCCCATTGATTTGAAATTTTATGGGTTGAAAATGCATGTCCAGGTACAATATTGCTATAGCATTTCACAGGACACAGCACTCATGA

mRNA sequence

ATGATCGAGGAGTTCCTCCTCCATCCGCCGATTCGTGAGGAGGCGAGATTTTTGCGGCAAGCAGGGATGTGTGATTTGATGTGGAATCTTTGGGGGGAAAGAAATAATAGAGTTTTTAGGGGAAGGGAGAGAGACTCAGATGATGTGTGGTCTCTCACTAGATTTCATGTATCTCTTTGGGCATCAGTTTCTAAGGTGTTTTGTAATTATCTGTTAGGCCTTATTTTGCTTGACTGGGATCCTGTTAGGGACCAACGTAGTATGGGATGCATTTGTCCCACATTGGAAAGATATGGGCTCCTAATGGGCCGGTGGTCGACGACTTCGGAGAGGAGTGACGGCGGAGGGGTTGACCGGAACCAGCTGAGTGAAGCGTCGCCGTGCACAGCCGTCGAGACGTCGGCTTTCCGGGGAGGGGCAATTGTTAGGGACCAAGGTAGTATGGAATGCCTTTGTCCCACATTGGAAAGATATGGGCTCCTAATGGGGTACAATATTGCTATAGCATTTCACAGGACACAGCACTCATGA

Coding sequence (CDS)

ATGATCGAGGAGTTCCTCCTCCATCCGCCGATTCGTGAGGAGGCGAGATTTTTGCGGCAAGCAGGGATGTGTGATTTGATGTGGAATCTTTGGGGGGAAAGAAATAATAGAGTTTTTAGGGGAAGGGAGAGAGACTCAGATGATGTGTGGTCTCTCACTAGATTTCATGTATCTCTTTGGGCATCAGTTTCTAAGGTGTTTTGTAATTATCTGTTAGGCCTTATTTTGCTTGACTGGGATCCTGTTAGGGACCAACGTAGTATGGGATGCATTTGTCCCACATTGGAAAGATATGGGCTCCTAATGGGCCGGTGGTCGACGACTTCGGAGAGGAGTGACGGCGGAGGGGTTGACCGGAACCAGCTGAGTGAAGCGTCGCCGTGCACAGCCGTCGAGACGTCGGCTTTCCGGGGAGGGGCAATTGTTAGGGACCAAGGTAGTATGGAATGCCTTTGTCCCACATTGGAAAGATATGGGCTCCTAATGGGGTACAATATTGCTATAGCATTTCACAGGACACAGCACTCATGA

Protein sequence

MIEEFLLHPPIREEARFLRQAGMCDLMWNLWGERNNRVFRGRERDSDDVWSLTRFHVSLWASVSKVFCNYLLGLILLDWDPVRDQRSMGCICPTLERYGLLMGRWSTTSERSDGGGVDRNQLSEASPCTAVETSAFRGGAIVRDQGSMECLCPTLERYGLLMGYNIAIAFHRTQHS

Homology

[Close]

BLAST of Spg001636 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 5.9e-22
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 1   MIEEFLLHPPIREEARFLRQAGMCDLMWNLWGERNNRVFRGRERDSDDVWSLTRFHVSLW 60
           M E F+LHPP +E+ RFL  A +C +MW++WGERN+RVFRG++RD  ++ SL RFHVSLW
Sbjct: 313 MTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRGKDRDLSEIGSLVRFHVSLW 372

Query: 61  ASVSKVFCNYLLGLILLDWDPVRDQRSM 89
            SVSK+FCNY LG I L   P  D   M
Sbjct: 373 TSVSKLFCNYSLGNINLSLIPFFDLMQM 400

[Close]

BLAST of Spg001636 vs. NCBI nr
Match: XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 9.7e-17
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 1   MIEEFLLHPPIREEARFLRQAGMCDLMWNLWGERNNRVFRGRERDSDDVWSLTRFHVSLW 60
           MIEEFLL+ P  E  RFL +A +C ++W LW E N RVF G ER + ++W + R+HVSLW
Sbjct: 90  MIEEFLLNLPCGERGRFLWRACVCAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLW 149

Query: 61  ASVSKVFCNYLLGLILLDW 80
            S+SK FCNY L +IL  W
Sbjct: 150 DSISKTFCNYPLDMILYSW 168

[Close]

BLAST of Spg001636 vs. NCBI nr
Match: KAA0057203.1 (double-stranded RNA-binding protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK18759.1 double-stranded RNA-binding protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 6.1e-11
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 26 LMWNLWGERNNRVFRGRERDSDDVWSLTRFHVSLWASVSKVFCNYLLG 74
          ++W+ WGE+++RVFRGRERDS +VWSL RFHV LW  + K+FCNY +G
Sbjct: 1  MLWDNWGEKSDRVFRGRERDSCEVWSLARFHVFLWVLILKIFCNYSIG 48

[Close]

BLAST of Spg001636 vs. NCBI nr
Match: TYK23653.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 5.2e-10
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1   MIEEFLLHPPIREEARFLRQAGMCDLMWNLWGERNNRVFRGRERDSDDVWSLTRFHVSLW 60
           +I EFLL  P+RE+  FL   G+C ++WNLWGERNNRVFRG ER+  +VWSL R    L 
Sbjct: 33  VIGEFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVEREPCEVWSLVR---CLQ 92

Query: 61  ASVSKVFCNYL---LGLILL 78
             V++ + N +   LG++L+
Sbjct: 93  ERVAQRYMNLMGDFLGIMLI 109

[Close]

BLAST of Spg001636 vs. NCBI nr
Match: KAG7014044.1 (hypothetical protein SDJN02_24216, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.1 bits (183), Expect = 6.8e-10
Identity = 42/86 (48.84%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 1   MIEEFLLHPPIREEARFLRQAGMCDLMWNLWGERNNRVFRGRERDSDDVWSLTRFHVSLW 60
           +IEE LLHPP  E  R L             G+R +R FRG ER   DVW+   F VSLW
Sbjct: 113 IIEESLLHPPFHEWKRTL-------------GQRTSRDFRGLERSWSDVWAFITFKVSLW 172

Query: 61  ASVSKVFCNYLLGLILLDWDP-VRDQ 86
            S +K  CNY LGLILLD  P +R+Q
Sbjct: 173 TSTTKSLCNYSLGLILLDRRPDIRNQ 185

[Close]

BLAST of Spg001636 vs. ExPASy TrEMBL
Match: A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.9e-22
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 1   MIEEFLLHPPIREEARFLRQAGMCDLMWNLWGERNNRVFRGRERDSDDVWSLTRFHVSLW 60
           M E F+LHPP +E+ RFL  A +C +MW++WGERN+RVFRG++RD  ++ SL RFHVSLW
Sbjct: 313 MTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRGKDRDLSEIGSLVRFHVSLW 372

Query: 61  ASVSKVFCNYLLGLILLDWDPVRDQRSM 89
            SVSK+FCNY LG I L   P  D   M
Sbjct: 373 TSVSKLFCNYSLGNINLSLIPFFDLMQM 400

[Close]

BLAST of Spg001636 vs. ExPASy TrEMBL
Match: A0A1S4DXB1 (uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.7e-17
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 1   MIEEFLLHPPIREEARFLRQAGMCDLMWNLWGERNNRVFRGRERDSDDVWSLTRFHVSLW 60
           MIEEFLL+ P  E  RFL +A +C ++W LW E N RVF G ER + ++W + R+HVSLW
Sbjct: 90  MIEEFLLNLPCGERGRFLWRACVCAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLW 149

Query: 61  ASVSKVFCNYLLGLILLDW 80
            S+SK FCNY L +IL  W
Sbjct: 150 DSISKTFCNYPLDMILYSW 168

[Close]

BLAST of Spg001636 vs. ExPASy TrEMBL
Match: A0A5D3D5D0 (Double-stranded RNA-binding protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00620 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.0e-11
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 26 LMWNLWGERNNRVFRGRERDSDDVWSLTRFHVSLWASVSKVFCNYLLG 74
          ++W+ WGE+++RVFRGRERDS +VWSL RFHV LW  + K+FCNY +G
Sbjct: 1  MLWDNWGEKSDRVFRGRERDSCEVWSLARFHVFLWVLILKIFCNYSIG 48

[Close]

BLAST of Spg001636 vs. ExPASy TrEMBL
Match: A0A5D3DJ76 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-10
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1   MIEEFLLHPPIREEARFLRQAGMCDLMWNLWGERNNRVFRGRERDSDDVWSLTRFHVSLW 60
           +I EFLL  P+RE+  FL   G+C ++WNLWGERNNRVFRG ER+  +VWSL R    L 
Sbjct: 33  VIGEFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVEREPCEVWSLVR---CLQ 92

Query: 61  ASVSKVFCNYL---LGLILL 78
             V++ + N +   LG++L+
Sbjct: 93  ERVAQRYMNLMGDFLGIMLI 109

[Close]

BLAST of Spg001636 vs. ExPASy TrEMBL
Match: A0A5D3DK64 (DNA repair protein RAD51-like protein 4 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00370 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.6e-09
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 2   IEEFLLHPPIREEARFLRQAGMCDLMWNLWGERNNRVFRGRERDSDDVWSLTRFHVSLWA 61
           IEEFLLH P R+E  FL  AG C ++W++W ERN++VFRGR+R+  ++W L+     L  
Sbjct: 193 IEEFLLHLPFRDEEVFLLLAGACVVIWDIWDERNDQVFRGRKREYSEIWPLSE-QSMLQQ 252

Query: 62  SVSKVFCNYLLGLILL 78
            +S + C+ +  +  L
Sbjct: 253 VMSSISCHSVFDIFAL 267

The following BLAST results are available for this feature:

BLAST of Spg001636 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK19563.1	5.9e-22	57.95	uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa]	[more]
XP_016900613.1	9.7e-17	54.43	PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo]	[more]
KAA0057203.1	6.1e-11	62.50	double-stranded RNA-binding protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK...	[more]
TYK23653.1	5.2e-10	48.75	SIL1 [Cucumis melo var. makuwa]	[more]
KAG7014044.1	6.8e-10	48.84	hypothetical protein SDJN02_24216, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Spg001636 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg001636 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D7T2	2.9e-22	57.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DXB1	4.7e-17	54.43	uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=...	[more]
A0A5D3D5D0	3.0e-11	62.50	Double-stranded RNA-binding protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3DJ76	2.5e-10	48.75	SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1	[more]
A0A5D3DK64	3.6e-09	42.11	DNA repair protein RAD51-like protein 4 isoform X1 OS=Cucumis melo var. makuwa O...	[more]

BLAST of Spg001636 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001636.1	Spg001636.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:1990547	mitochondrial phosphate ion transmembrane transport
biological_process	GO:0019538	protein metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0005315	inorganic phosphate transmembrane transporter activity
molecular_function	GO:0043167	ion binding
molecular_function	GO:0008237	metallopeptidase activity