Spg001593 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001593
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ras-related protein Rab-2A
Location	scaffold10: 2013362 .. 2015917 (+)
RNA-Seq Expression	Spg001593
Synteny	Spg001593

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGTCGTTGTCGTACGATTACCTCTTCAAGTGCATCGTCGTTGGAGATACAGGTTTTTTTTTTTTTTTTCTCAAAGTCCTTGAAATTATTTTTCTTGAAAAATTGTGAGAATTAAATAAAATAGTTTCAAAGAGTTTAATTTGTGTGTGGCTTTTGTAGGTGTGGGGAAATCTTGTTTGATGTTGCAGTTTACGGACCGGCGGTTTCAGCCGGGTCATGACGTCACTATTGGGGCTCAATTTGGTGCTCGAACCGTCGCCATTAATGGCCGTCCTATTAGGCTTCATATTTGGGATACTGTGAGTTTCGCTTACTTTTAAAAAAAAATAAATGAAAATTTGGTTAAAACAATTATAATTTTCGCACATTTTATTTGTATTTTCTTTATAAAATATAGGTTAAAAAATTATAAGTTTAATTCTCTATAACCTTTTAGGATCATGTTAATTTGGTTCATGAACTTTGAAAAGTGTCCGATATAAACTTTTACTTTTGTGTTTATAAATCCTTAACCTATTTGATATTTTAAAAAATTTACAGACCTATTGAATACAAAATTGGAAGTTTAGGGTTTCAATAGTCATAAAATTCAATTTTATATTTGCTAAATTGGTTCATTTTTTAAAACCTCGAATATGCCTAGAACCAATTAGATAGTTTAGAGATCTATTGGACACTATCTAAAGTTTAGGGACCAAATTAATACAACATTGAAAGTTTAGTGACTAAACTTGTAATTTAACCTAAAATATATTTTTGTCATGAGATTTGAACTTTGTTTCTATTTGGTCTCTGAGTTTTCAAAACTAATAGCTTTGGTTCTAACCTTAGTGTCTAATAGGATTTCTAACATATTCCATAAATTCAAAATTAATGAATCTATTGAATATAAAATTGAATTTTATGTCATACTGAGTTTTCAATTACGGTGTTTGTTGTAGGCTGGGCAAGAGAGATTCAGATCAATTACAAGATCTTTCTACAGAGGAGCGATTGGTGTTCTTTTAGTTTATGATATAACTAGGTGAGTCTATTAGATGAAATTCTCTCAAATATCTTACGATAATATATCATTTGCCAAAATGTTTTTTTTTACAACCTTTGCCAAGATGTTAAAGGTTAAAATTGCCCCTATTTTTTTTAACTATATAAAATGTATGCTCATGATTCTAATATTTAGGAGAGAGACGTTCGATCACTTAGCAAACTGGCTAGAGGATGCTCGTGAGCTTGCAAACCAAAACGTGTCCATTATGCTTGTAGGAAACAAGGCTGATCTCGATAGTCGAAGAGTTGTAAGTAAGGAAGAGGGAGAACAATTTGCAAAAGAAAATGGACTATTGTTTTTAGAGACATCTACCAAAGCAATTCGAAACGTTGATGAGGTCAGTTTGTGTCTAATAGATCTCTAAACTCTTGATTTTGTTTCTAATAAATCTTAAAACTTTTAATTTTGTGTTTAACTTTTTTAAAGCTCACCGACACGATTTAAAGTTCAAGTATCTATACACACAAATTAAAAGTTTTAAAAGTTAAATTTGTAATTTAAACTATTTCTTTTTAGCATTTTAGTCCTCACAAATTATGTTGTGTTTGATTTTAACAGGTCTTCATAGAGACTGCAACTAAAATAATTCAAAATATTCAAGGAGGTGTCGTTGACCTACCCAAGACGGTAAGTTTTTCAGTTTTTTGGATACAAATGTTAAATGTAGATTATTAGTTGTAAATGTTACCTAATTAATATAAAATTTCAAAAAAAAAAAATTTGAGTACATCAACATTTAGGGGTGGGGGGATTCGAACATATGACATCTCGGGCAAGGGTACATGTCGCTGAGCTAAACTTGTTTTGACTTATAAAATTTTAAATTAATTAAAGGAAAAGAAAGCCAGTCATTCAAGGACAAATATTTTTATGTTTTTCATTTTTTAAAGTGTGCTTTAAATAATAAAAAAGATTGTTGCATACAAAATCTTTTGAATCAAGTTTATTATTATATGTTTTTTATTTCTTACTATATATTTTGAAGATATTTTGTTAATCATTTTTGGATAATTTATCCATGATGTATTCAAAAATAGTGTTGTCAAAAAAAGATCCCTATTCAAAAATAGTTTTTAAATTGATCCAATTATTTTGAGTACTTTTTGTTTATCATGATTTTTAAAAAAGCATTTAAAGAAGCTACACTAAATACCCTTTCAAAAAGGAAAGAAGCTACACTAAATACACTTCAAATTATTAATTATTTCAGAGATGTTTATACAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTATTTCATGCAAGAATTATGAGTTTATTTATCTAGCATTGAAGAATGATGTTTTTTTTATAAGTTTTTTATAAGTCTTTTTTTTTTCTTTTTTAAGCTAAACTTTTTTTGTTGATATGAAGAACATAATTTATCATTTATTTTTTTATAATTTTGTTTAATTGAATATTGCAGCCAGCTGGGATCACGGTTGGTGATCGAGGGAAATTTAAAAGAGCTGCAGTGAGAAGCAAATGTTGTGGATTATTGTGA

mRNA sequence

ATGTCGTCGTCGTTGTCGTACGATTACCTCTTCAAGTGCATCGTCGTTGGAGATACAGGTGTGGGGAAATCTTGTTTGATGTTGCAGTTTACGGACCGGCGGTTTCAGCCGGGTCATGACGTCACTATTGGGGCTCAATTTGGTGCTCGAACCGTCGCCATTAATGGCCGTCCTATTAGGCTTCATATTTGGGATACTGCTGGGCAAGAGAGATTCAGATCAATTACAAGATCTTTCTACAGAGGAGCGATTGGTGTTCTTTTAGTTTATGATATAACTAGGAGAGAGACGTTCGATCACTTAGCAAACTGGCTAGAGGATGCTCGTGAGCTTGCAAACCAAAACGTGTCCATTATGCTTGTAGGAAACAAGGCTGATCTCGATAGTCGAAGAGTTGTAAGTAAGGAAGAGGGAGAACAATTTGCAAAAGAAAATGGACTATTGTTTTTAGAGACATCTACCAAAGCAATTCGAAACGTTGATGAGGTCTTCATAGAGACTGCAACTAAAATAATTCAAAATATTCAAGGAGGTGTCGTTGACCTACCCAAGACGCCAGCTGGGATCACGGTTGGTGATCGAGGGAAATTTAAAAGAGCTGCAGTGAGAAGCAAATGTTGTGGATTATTGTGA

Coding sequence (CDS)

ATGTCGTCGTCGTTGTCGTACGATTACCTCTTCAAGTGCATCGTCGTTGGAGATACAGGTGTGGGGAAATCTTGTTTGATGTTGCAGTTTACGGACCGGCGGTTTCAGCCGGGTCATGACGTCACTATTGGGGCTCAATTTGGTGCTCGAACCGTCGCCATTAATGGCCGTCCTATTAGGCTTCATATTTGGGATACTGCTGGGCAAGAGAGATTCAGATCAATTACAAGATCTTTCTACAGAGGAGCGATTGGTGTTCTTTTAGTTTATGATATAACTAGGAGAGAGACGTTCGATCACTTAGCAAACTGGCTAGAGGATGCTCGTGAGCTTGCAAACCAAAACGTGTCCATTATGCTTGTAGGAAACAAGGCTGATCTCGATAGTCGAAGAGTTGTAAGTAAGGAAGAGGGAGAACAATTTGCAAAAGAAAATGGACTATTGTTTTTAGAGACATCTACCAAAGCAATTCGAAACGTTGATGAGGTCTTCATAGAGACTGCAACTAAAATAATTCAAAATATTCAAGGAGGTGTCGTTGACCTACCCAAGACGCCAGCTGGGATCACGGTTGGTGATCGAGGGAAATTTAAAAGAGCTGCAGTGAGAAGCAAATGTTGTGGATTATTGTGA

Protein sequence

MSSSLSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIWDTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNKADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPKTPAGITVGDRGKFKRAAVRSKCCGLL

Homology

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BLAST of Spg001593 vs. NCBI nr
Match: XP_038894253.1 (ras-related protein RABB1b [Benincasa hispida])

HSP 1 Score: 294.7 bits (753), Expect = 6.5e-76
Identity = 145/211 (68.72%), Postives = 167/211 (79.15%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SYDYLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR V I+GRPI+L IW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N+SIMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
           ADL  RR VSKEEGEQFAKENGLLFLE S +  +NV+E FI+TA KI+QNIQ GV D+  
Sbjct: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 185 TPAGITVG-------DRGKFKRAAVRSKCCG 209
             +GI VG          +    A R  CCG
Sbjct: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 211

[Close]

BLAST of Spg001593 vs. NCBI nr
Match: XP_008450002.1 (PREDICTED: ras-related protein RABB1b [Cucumis melo] >KAA0037848.1 ras-related protein RABB1b [Cucumis melo var. makuwa] >TYK27226.1 ras-related protein RABB1b [Cucumis melo var. makuwa])

HSP 1 Score: 294.7 bits (753), Expect = 6.5e-76
Identity = 145/211 (68.72%), Postives = 167/211 (79.15%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SYDYLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR V I+GRPI+L IW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N+SIMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
           ADL  RR VSKEEGEQFAKENGLLFLE S +  +NV+E FI+TA KI+QNIQ GV D+  
Sbjct: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 185 TPAGITVG-------DRGKFKRAAVRSKCCG 209
             +GI VG          +    A R  CCG
Sbjct: 181 ESSGIKVGYGRPQGPSGARDGAVAQRGGCCG 211

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BLAST of Spg001593 vs. NCBI nr
Match: XP_007215965.1 (ras-related protein RABB1b [Prunus persica] >ONI19755.1 hypothetical protein PRUPE_3G295400 [Prunus persica])

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-75
Identity = 142/210 (67.62%), Postives = 167/210 (79.52%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SYDYLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR V I+GRP++L IW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPVKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N++IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
           +DL  RR VSKEEGEQFAKENGLLFLE S +  +NV+E FI+TA KI+QNIQ GV D+  
Sbjct: 121 SDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQDGVFDVSN 180

Query: 185 TPAGITV------GDRGKFKRAAVRSKCCG 209
             +GI V      G  G     A R  CCG
Sbjct: 181 ESSGIKVGYGRPQGPSGSNGAVAQRGGCCG 210

[Close]

BLAST of Spg001593 vs. NCBI nr
Match: XP_021890335.1 (ras-related protein RABB1b [Carica papaya])

HSP 1 Score: 293.5 bits (750), Expect = 1.4e-75
Identity = 143/211 (67.77%), Postives = 168/211 (79.62%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SYDYLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR VAI+GRPI+L IW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVAIDGRPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N+SIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
           +DL  RR VSKEEGEQFAKE+GLLFLE S +  +NV+E FI TA KI+QNIQ GV+D+  
Sbjct: 121 SDLSHRRAVSKEEGEQFAKEHGLLFLEASARTAQNVEEAFIRTAAKILQNIQEGVIDVSN 180

Query: 185 TPAGITVG-------DRGKFKRAAVRSKCCG 209
             +GI  G          +    A RS CCG
Sbjct: 181 ESSGIKFGYGRPQGTAGARDGAVAQRSGCCG 211

[Close]

BLAST of Spg001593 vs. NCBI nr
Match: XP_024031976.1 (ras-related protein RABB1b [Morus notabilis] >XP_024031982.1 ras-related protein RABB1b [Morus notabilis] >XP_024031986.1 ras-related protein RABB1b [Morus notabilis])

HSP 1 Score: 293.1 bits (749), Expect = 1.9e-75
Identity = 139/188 (73.94%), Postives = 161/188 (85.64%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SYDYLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR V I+GRPI+L IW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLANWLEDAR+ AN N++IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLANWLEDARQHANPNMTIMLIGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
            DL  RRVVSKEEGEQFAKENGLLFLE S +  +NV+E FI+TA KI+QNIQ GV D+  
Sbjct: 121 CDLAHRRVVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 185 TPAGITVG 193
             +GI VG
Sbjct: 181 ESSGIKVG 188

[Close]

BLAST of Spg001593 vs. ExPASy Swiss-Prot
Match: Q38922 (Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.0e-76
Identity = 134/188 (71.28%), Postives = 160/188 (85.11%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SYDYLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR V ++GRPI+L IW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N+SIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
            DL  +R VSKEEG+QFAKE+GLLFLE S +  +NV+E FIETA KI+QNIQ GV D+  
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 185 TPAGITVG 193
             +GI +G
Sbjct: 181 ESSGIKIG 188

[Close]

BLAST of Spg001593 vs. ExPASy Swiss-Prot
Match: P92963 (Ras-related protein RABB1c OS=Arabidopsis thaliana OX=3702 GN=RABB1C PE=1 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.7e-71
Identity = 128/191 (67.02%), Postives = 154/191 (80.63%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SY YLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR + I+ +PI+L IW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N++IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
            DL  RR VS EEGEQFAKE+GL+F+E S K  +NV+E FI+TA  I + IQ GV D+  
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 185 TPAGITVGDRG 196
              GI VG  G
Sbjct: 181 ESYGIKVGYGG 191

[Close]

BLAST of Spg001593 vs. ExPASy Swiss-Prot
Match: P49103 (Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2)

HSP 1 Score: 269.6 bits (688), Expect = 2.9e-71
Identity = 127/188 (67.55%), Postives = 153/188 (81.38%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SY YLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR + I+ +PI+L IW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N++IMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
            DL  RR VS EEGEQFAKE+GL+F+E S K  +NV+E F++TA  I + IQ GV D+  
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 185 TPAGITVG 193
              GI VG
Sbjct: 181 ESYGIKVG 188

[Close]

BLAST of Spg001593 vs. ExPASy Swiss-Prot
Match: P49104 (Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.9e-71
Identity = 127/188 (67.55%), Postives = 153/188 (81.38%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SY YLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR + I+ +PI+L IW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N++IMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
            DL  RR VS EEGEQFAKE+GL+F+E S K  +NV+E F++TA  I + IQ GV D+  
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 185 TPAGITVG 193
              GI VG
Sbjct: 181 ESYGIKVG 188

[Close]

BLAST of Spg001593 vs. ExPASy Swiss-Prot
Match: Q39570 (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.8e-71
Identity = 128/191 (67.02%), Postives = 154/191 (80.63%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SY YLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR + I+G+ I+L IW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N++IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
            DL  RR V+ EEGEQFAKE+GL+FLETS +   NV+E FI TA +I + IQ GV D+  
Sbjct: 121 CDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180

Query: 185 TPAGITVGDRG 196
              GI VG  G
Sbjct: 181 ESYGIKVGYGG 191

[Close]

BLAST of Spg001593 vs. ExPASy TrEMBL
Match: A0A5A7T4U5 (Ras-related protein RABB1b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G001040 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 3.1e-76
Identity = 145/211 (68.72%), Postives = 167/211 (79.15%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SYDYLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR V I+GRPI+L IW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N+SIMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
           ADL  RR VSKEEGEQFAKENGLLFLE S +  +NV+E FI+TA KI+QNIQ GV D+  
Sbjct: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 185 TPAGITVG-------DRGKFKRAAVRSKCCG 209
             +GI VG          +    A R  CCG
Sbjct: 181 ESSGIKVGYGRPQGPSGARDGAVAQRGGCCG 211

[Close]

BLAST of Spg001593 vs. ExPASy TrEMBL
Match: A0A1S3BMP4 (ras-related protein RABB1b OS=Cucumis melo OX=3656 GN=LOC103491719 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 3.1e-76
Identity = 145/211 (68.72%), Postives = 167/211 (79.15%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SYDYLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR V I+GRPI+L IW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N+SIMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
           ADL  RR VSKEEGEQFAKENGLLFLE S +  +NV+E FI+TA KI+QNIQ GV D+  
Sbjct: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 185 TPAGITVG-------DRGKFKRAAVRSKCCG 209
             +GI VG          +    A R  CCG
Sbjct: 181 ESSGIKVGYGRPQGPSGARDGAVAQRGGCCG 211

[Close]

BLAST of Spg001593 vs. ExPASy TrEMBL
Match: M5WU03 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G295400 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.3e-76
Identity = 142/210 (67.62%), Postives = 167/210 (79.52%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SYDYLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR V I+GRP++L IW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPVKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N++IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
           +DL  RR VSKEEGEQFAKENGLLFLE S +  +NV+E FI+TA KI+QNIQ GV D+  
Sbjct: 121 SDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQDGVFDVSN 180

Query: 185 TPAGITV------GDRGKFKRAAVRSKCCG 209
             +GI V      G  G     A R  CCG
Sbjct: 181 ESSGIKVGYGRPQGPSGSNGAVAQRGGCCG 210

[Close]

BLAST of Spg001593 vs. ExPASy TrEMBL
Match: A0A498J3T3 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_031682 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.6e-75
Identity = 142/209 (67.94%), Postives = 165/209 (78.95%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SYDYLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR V I+GRPI+L IW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N++IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
            DL  RR VSKEEGEQFAKENGLLFLE S +  +NV+E FI+TA KI+QNIQ GV D+  
Sbjct: 121 CDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 185 TPAGITV------GDRGKFKRAAVRSKCC 208
             +GI V      G  G     A R  CC
Sbjct: 181 ESSGIKVGYGRPQGQSGSGGTVAQRGGCC 209

[Close]

BLAST of Spg001593 vs. ExPASy TrEMBL
Match: A0A6J1JF93 (ras-related protein RABB1b OS=Cucurbita maxima OX=3661 GN=LOC111486377 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.6e-75
Identity = 139/188 (73.94%), Postives = 161/188 (85.64%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SYDYLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR V I+GRP++L IW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPVKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N+SIMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
           ADL  RR VSKEEGEQFAKENGLLFLE S +  +NV+E FI+TA KI+QNIQ GV D+  
Sbjct: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 185 TPAGITVG 193
             +GI VG
Sbjct: 181 ESSGIKVG 188

[Close]

BLAST of Spg001593 vs. TAIR 10
Match: AT4G35860.1 (GTP-binding 2 )

HSP 1 Score: 287.7 bits (735), Expect = 7.4e-78
Identity = 134/188 (71.28%), Postives = 160/188 (85.11%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SYDYLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR V ++GRPI+L IW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N+SIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
            DL  +R VSKEEG+QFAKE+GLLFLE S +  +NV+E FIETA KI+QNIQ GV D+  
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 185 TPAGITVG 193
             +GI +G
Sbjct: 181 ESSGIKIG 188

[Close]

BLAST of Spg001593 vs. TAIR 10
Match: AT4G17170.1 (RAB GTPase homolog B1C )

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-72
Identity = 128/191 (67.02%), Postives = 154/191 (80.63%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SY YLFK I++GDTGVGKSCL+LQFTD+RFQP HD+TIG +FGAR + I+ +PI+L IW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ AN N++IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
            DL  RR VS EEGEQFAKE+GL+F+E S K  +NV+E FI+TA  I + IQ GV D+  
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 185 TPAGITVGDRG 196
              GI VG  G
Sbjct: 181 ESYGIKVGYGG 191

[Close]

BLAST of Spg001593 vs. TAIR 10
Match: AT4G17160.1 (RAB GTPase homolog B1A )

HSP 1 Score: 261.2 bits (666), Expect = 7.4e-70
Identity = 124/206 (60.19%), Postives = 158/206 (76.70%), Query Frame = 0


Query: 5   LSYDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIW 64
           +SY Y FK I++GDTGVGKSCL+L+FTD+RFQ  HD+TIG +FGA+T+ I+ +PI+L IW
Sbjct: 1   MSYAYRFKYIIIGDTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITIDNKPIKLQIW 60

Query: 65  DTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNK 124
           DTAGQE FRS+TRS+YRG  G LLVYDITRRETF+HLA+WLE+AR+ A++N++ ML+GNK
Sbjct: 61  DTAGQESFRSVTRSYYRGRAGTLLVYDITRRETFNHLASWLEEARQHASENMTTMLIGNK 120

Query: 125 ADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPK 184
            DL+ +R VS EEGEQFA+E+GL+F+E S K   NV+E F+ETA  I + IQ GVVD   
Sbjct: 121 CDLEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATIYKRIQDGVVDEAN 180

Query: 185 TPAGITVGDRG--KFKRAAVRSKCCG 209
            P GIT G  G      +  R  CCG
Sbjct: 181 EP-GITPGPFGGKDASSSQQRRGCCG 205

[Close]

BLAST of Spg001593 vs. TAIR 10
Match: AT4G35860.2 (GTP-binding 2 )

HSP 1 Score: 205.7 bits (522), Expect = 3.7e-53
Identity = 98/141 (69.50%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 52  VAINGRPIRLHIWDTAGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDAREL 111
           V ++GRPI+L IWDTAGQE FRSITRS+YRGA G LLVYDITRRETF+HLA+WLEDAR+ 
Sbjct: 2   VTVDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61

Query: 112 ANQNVSIMLVGNKADLDSRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKI 171
           AN N+SIML+GNK DL  +R VSKEEG+QFAKE+GLLFLE S +  +NV+E FIETA KI
Sbjct: 62  ANPNMSIMLIGNKCDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKI 121

Query: 172 IQNIQGGVVDLPKTPAGITVG 193
           +QNIQ GV D+    +GI +G
Sbjct: 122 LQNIQDGVFDVSNESSGIKIG 142

[Close]

BLAST of Spg001593 vs. TAIR 10
Match: AT5G59840.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 189.9 bits (481), Expect = 2.1e-48
Identity = 95/206 (46.12%), Postives = 134/206 (65.05%), Query Frame = 0


Query: 7   YDYLFKCIVVGDTGVGKSCLMLQFTDRRFQPGHDVTIGAQFGARTVAINGRPIRLHIWDT 66
           YDYL K +++GD+GVGKSCL+L+F+D  F      TIG  F  RT+ ++G+ I+L IWDT
Sbjct: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71

Query: 67  AGQERFRSITRSFYRGAIGVLLVYDITRRETFDHLANWLEDARELANQNVSIMLVGNKAD 126
           AGQERFR+IT ++YRGA+G+LLVYD+T   +F+++ NW+ +  + A+ NV+ +LVGNKAD
Sbjct: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131

Query: 127 LD-SRRVVSKEEGEQFAKENGLLFLETSTKAIRNVDEVFIETATKIIQNIQGGVVDLPKT 186
           +D S+R V K +G+  A E G+ F ETS K   NV+EVF   A  I Q +     D    
Sbjct: 132 MDESKRAVPKSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAD--TDSRAE 191

Query: 187 PAGITVGDRGKFK---RAAVRSKCCG 209
           PA I +    +     +A  +S CCG
Sbjct: 192 PATIKISQTDQAAGAGQATQKSACCG 215

The following BLAST results are available for this feature:

BLAST of Spg001593 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894253.1	6.5e-76	68.72	ras-related protein RABB1b [Benincasa hispida]	[more]
XP_008450002.1	6.5e-76	68.72	PREDICTED: ras-related protein RABB1b [Cucumis melo] >KAA0037848.1 ras-related p...	[more]
XP_007215965.1	1.1e-75	67.62	ras-related protein RABB1b [Prunus persica] >ONI19755.1 hypothetical protein PRU...	[more]
XP_021890335.1	1.4e-75	67.77	ras-related protein RABB1b [Carica papaya]	[more]
XP_024031976.1	1.9e-75	73.94	ras-related protein RABB1b [Morus notabilis] >XP_024031982.1 ras-related protein...	[more]

BLAST of Spg001593 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38922	1.0e-76	71.28	Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1	[more]
P92963	1.7e-71	67.02	Ras-related protein RABB1c OS=Arabidopsis thaliana OX=3702 GN=RABB1C PE=1 SV=1	[more]
P49103	2.9e-71	67.55	Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2	[more]
P49104	2.9e-71	67.55	Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1	[more]
Q39570	3.8e-71	67.02	GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC4 PE=3 SV=...	[more]

BLAST of Spg001593 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T4U5	3.1e-76	68.72	Ras-related protein RABB1b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3BMP4	3.1e-76	68.72	ras-related protein RABB1b OS=Cucumis melo OX=3656 GN=LOC103491719 PE=4 SV=1	[more]
M5WU03	5.3e-76	67.62	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G295400 PE=4 SV=1	[more]
A0A498J3T3	1.6e-75	67.94	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_031682 PE=4 SV=1	[more]
A0A6J1JF93	1.6e-75	73.94	ras-related protein RABB1b OS=Cucurbita maxima OX=3661 GN=LOC111486377 PE=4 SV=1	[more]

BLAST of Spg001593 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35860.1	7.4e-78	71.28	GTP-binding 2	[more]
AT4G17170.1	1.2e-72	67.02	RAB GTPase homolog B1C	[more]
AT4G17160.1	7.4e-70	60.19	RAB GTPase homolog B1A	[more]
AT4G35860.2	3.7e-53	69.50	GTP-binding 2	[more]
AT5G59840.1	2.1e-48	46.12	Ras-related small GTP-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 34..50 score: 29.34 coord: 114..127 score: 54.97 coord: 149..171 score: 38.2 coord: 11..32 score: 50.02 coord: 52..74 score: 50.7
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 11..174 e-value: 1.8E-92 score: 323.2
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 16..209 e-value: 1.1E-5 score: 31.3
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 8..174 e-value: 3.4E-35 score: 132.9
None	No IPR available	PANTHER	PTHR47979	DRAB11-RELATED	coord: 5..195
None	No IPR available	PANTHER	PTHR47979:SF42	RAS-RELATED PROTEIN RABB1C-LIKE	coord: 5..195
None	No IPR available	PROSITE	PS51420	RHO	coord: 4..172 score: 10.102446
None	No IPR available	PROSITE	PS51419	RAB	coord: 6..207 score: 34.214165
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 13..175 e-value: 1.8E-11 score: 27.3
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 12..172 e-value: 1.8E-57 score: 193.5
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 3..210 score: 19.150883
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 9..164 e-value: 7.1E-30 score: 101.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 2..182 e-value: 1.5E-67 score: 228.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 6..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001593.1	Spg001593.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051603	proteolysis involved in cellular protein catabolic process
biological_process	GO:0030100	regulation of endocytosis
cellular_component	GO:0005768	endosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005839	proteasome core complex
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0004298	threonine-type endopeptidase activity