Spg001539 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001539
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold10: 103994 .. 104506 (+)
RNA-Seq Expression	Spg001539
Synteny	Spg001539

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCGAACCTCCGTCAGTGGCGAGTTCTTCGCCGAAGCTCTCAAAACCTACTCATTTATGTGGCACTCTGGAATTCATGGCAACAATTTTACTTTTCCTCTCCTCCTCAAGGCTTGTGCCAATCTTGCTCTGATCAGTGATGGCACAATGCTCCACGCTCACCTCATCCATGTAGGGTTCGAATCAACATCTTTGTTCAAACCTCGCTCTTCGACATGTACTCAAAGTGCTTCGACTTGGCTTATGCACGCCAAATGTTCGACGAAATGTCTACAAAAAGTGTCATCTTTTGGAATTGAATTCTATGATTGTCGTTTATTCTCGCGGTTTTCATGTTAATGAAGCGTTAAAGCTATTTAGAGAGATGTGGGGGGTTGGTTTTGAGCCAAATATGGATATAATTTTGTGTTAATGAAGCGAAGGGCATATTTTCCTCGTAATCCATATGCAGACCTTATAACACAGACTCGCAAGCCATCATCTTCTCCGAATGCAGATGACAATATCTGA

mRNA sequence

ATGATTCGAACCTCCGTCAGTGGCGAGTTCTTCGCCGAAGCTCTCAAAACCTACTCATTTATGTGGCACTCTGGAATTCATGGCAACAATTTTACTTTTCCTCTCCTCCTCAAGGCTTGTGCCAATCTTGCTCTGATCAGTGATGGCACAATGCTCCACGCTCACCTCATCCATCGAAGGGCATATTTTCCTCGTAATCCATATGCAGACCTTATAACACAGACTCGCAAGCCATCATCTTCTCCGAATGCAGATGACAATATCTGA

Coding sequence (CDS)

ATGATTCGAACCTCCGTCAGTGGCGAGTTCTTCGCCGAAGCTCTCAAAACCTACTCATTTATGTGGCACTCTGGAATTCATGGCAACAATTTTACTTTTCCTCTCCTCCTCAAGGCTTGTGCCAATCTTGCTCTGATCAGTGATGGCACAATGCTCCACGCTCACCTCATCCATCGAAGGGCATATTTTCCTCGTAATCCATATGCAGACCTTATAACACAGACTCGCAAGCCATCATCTTCTCCGAATGCAGATGACAATATCTGA

Protein sequence

MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIHRRAYFPRNPYADLITQTRKPSSSPNADDNI

Homology

[Close]

BLAST of Spg001539 vs. NCBI nr
Match: XP_004137641.1 (pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-18
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 2  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH 59
          IR+SV+G FFA++L+TYSFM HSGIHGNNFTFPLLLKACANLA I DGTMLHAHLIH
Sbjct: 25 IRSSVNGGFFAQSLETYSFMRHSGIHGNNFTFPLLLKACANLASIGDGTMLHAHLIH 81

[Close]

BLAST of Spg001539 vs. NCBI nr
Match: XP_022137264.1 (pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia])

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-18
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI 58
          MIR+SV+G FFAE L+TYSFM HSGIHGNNFTFPLLLKACANLA I DGTMLHAHLI
Sbjct: 23 MIRSSVNGGFFAETLETYSFMRHSGIHGNNFTFPLLLKACANLASIGDGTMLHAHLI 79

[Close]

BLAST of Spg001539 vs. NCBI nr
Match: TYJ99083.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 2  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH 59
          IR+SV+G FFA+ L+TYSFM  SGIHGNNFTFPLLLKACANLA I DGTMLHAHLIH
Sbjct: 25 IRSSVNGGFFAQTLETYSFMRQSGIHGNNFTFPLLLKACANLASIGDGTMLHAHLIH 81

[Close]

BLAST of Spg001539 vs. NCBI nr
Match: XP_008446053.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 2  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH 59
          IR+SV+G FFA+ L+TYSFM  SGIHGNNFTFPLLLKACANLA I DGTMLHAHLIH
Sbjct: 25 IRSSVNGGFFAQTLETYSFMRQSGIHGNNFTFPLLLKACANLASIGDGTMLHAHLIH 81

[Close]

BLAST of Spg001539 vs. NCBI nr
Match: XP_038893873.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 6.4e-17
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 2  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIHRR 61
          IR SV+G FF E L+TYSFM HSGIHGNNFTFPLLLKAC+NLA I DGTMLHAHLI  R
Sbjct: 25 IRISVNGGFFTEXLETYSFMRHSGIHGNNFTFPLLLKACSNLASIGDGTMLHAHLIRVR 83

[Close]

BLAST of Spg001539 vs. ExPASy Swiss-Prot
Match: Q9LUS3 (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.1e-07
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 1   MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL 57
           MIR   S +F  +AL  Y  M +SG+    +T+P +LKACA L  I DG ++H+H+
Sbjct: 74  MIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHV 129

[Close]

BLAST of Spg001539 vs. ExPASy Swiss-Prot
Match: P0C8Q2 (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 25/56 (44.64%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 2  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI 58
          IR +V+     E+L  +  M   G   NNFTFP + KACA LA +    M+HAHLI
Sbjct: 24 IREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLI 79

[Close]

BLAST of Spg001539 vs. ExPASy Swiss-Prot
Match: Q9C6T2 (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.9e-04
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 0


Query: 1   MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL 57
           MIR  V+   F EAL  Y+ M   G   +NFT+P LLKAC  L  I +G  +H  +
Sbjct: 103 MIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQV 158

[Close]

BLAST of Spg001539 vs. ExPASy Swiss-Prot
Match: Q9FRI5 (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.4e-04
Identity = 22/62 (35.48%), Postives = 36/62 (58.06%), Query Frame = 0


Query: 1   MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIHRR 60
           MI   V+  F+ EAL+    M  SGI  + FT+P +++ACA   L+  G  +HA+++ R 
Sbjct: 257 MISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE 316

Query: 61  AY 63
            +
Sbjct: 317 DF 318

[Close]

BLAST of Spg001539 vs. ExPASy TrEMBL
Match: A0A0A0LT91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043310 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.3e-19
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 2  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH 59
          IR+SV+G FFA++L+TYSFM HSGIHGNNFTFPLLLKACANLA I DGTMLHAHLIH
Sbjct: 25 IRSSVNGGFFAQSLETYSFMRHSGIHGNNFTFPLLLKACANLASIGDGTMLHAHLIH 81

[Close]

BLAST of Spg001539 vs. ExPASy TrEMBL
Match: A0A6J1C6R4 (pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charantia OX=3673 GN=LOC111008767 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.6e-19
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI 58
          MIR+SV+G FFAE L+TYSFM HSGIHGNNFTFPLLLKACANLA I DGTMLHAHLI
Sbjct: 23 MIRSSVNGGFFAETLETYSFMRHSGIHGNNFTFPLLLKACANLASIGDGTMLHAHLI 79

[Close]

BLAST of Spg001539 vs. ExPASy TrEMBL
Match: A0A5D3BIG9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002870 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.1e-18
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 2  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH 59
          IR+SV+G FFA+ L+TYSFM  SGIHGNNFTFPLLLKACANLA I DGTMLHAHLIH
Sbjct: 25 IRSSVNGGFFAQTLETYSFMRQSGIHGNNFTFPLLLKACANLASIGDGTMLHAHLIH 81

[Close]

BLAST of Spg001539 vs. ExPASy TrEMBL
Match: A0A1S3BDP0 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488899 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.1e-18
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 2  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH 59
          IR+SV+G FFA+ L+TYSFM  SGIHGNNFTFPLLLKACANLA I DGTMLHAHLIH
Sbjct: 25 IRSSVNGGFFAQTLETYSFMRQSGIHGNNFTFPLLLKACANLASIGDGTMLHAHLIH 81

[Close]

BLAST of Spg001539 vs. ExPASy TrEMBL
Match: A0A1J7ICK8 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_25806 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.7e-12
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 1  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI 58
          MIR S +  FF E LK Y+ M HSG+HGN FT+PLLLKACANL  IS GTMLH H++
Sbjct: 21 MIRDSTNNGFFTETLKIYTSMAHSGVHGNTFTYPLLLKACANLNSISLGTMLHGHVL 77

[Close]

BLAST of Spg001539 vs. TAIR 10
Match: AT3G16610.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 54.3 bits (129), Expect = 5.8e-08
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 1   MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL 57
           MIR   S +F  +AL  Y  M +SG+    +T+P +LKACA L  I DG ++H+H+
Sbjct: 74  MIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHV 129

[Close]

BLAST of Spg001539 vs. TAIR 10
Match: AT4G19191.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 9.2e-06
Identity = 25/56 (44.64%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 2  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI 58
          IR +V+     E+L  +  M   G   NNFTFP + KACA LA +    M+HAHLI
Sbjct: 24 IREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLI 79

[Close]

BLAST of Spg001539 vs. TAIR 10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.5e-05
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 0


Query: 1   MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL 57
           MIR  V+   F EAL  Y+ M   G   +NFT+P LLKAC  L  I +G  +H  +
Sbjct: 103 MIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQV 158

[Close]

BLAST of Spg001539 vs. TAIR 10
Match: AT1G25360.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.6e-05
Identity = 22/62 (35.48%), Postives = 36/62 (58.06%), Query Frame = 0


Query: 1   MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIHRR 60
           MI   V+  F+ EAL+    M  SGI  + FT+P +++ACA   L+  G  +HA+++ R 
Sbjct: 257 MISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE 316

Query: 61  AY 63
            +
Sbjct: 317 DF 318

[Close]

BLAST of Spg001539 vs. TAIR 10
Match: AT3G11460.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.0e-04
Identity = 19/46 (41.30%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 11 FAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL 57
          F+E++  Y  M  SG   + F+FP +LK+CA+L+L   G  LH H+
Sbjct: 34 FSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 79

The following BLAST results are available for this feature:

BLAST of Spg001539 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137641.1	1.5e-18	84.21	pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus]	[more]
XP_022137264.1	2.0e-18	85.96	pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia]	[more]
TYJ99083.1	1.7e-17	82.46	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_008446053.1	1.7e-17	82.46	PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-...	[more]
XP_038893873.1	6.4e-17	79.66	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloropla...	[more]

BLAST of Spg001539 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUS3	8.1e-07	42.86	Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX...	[more]
P0C8Q2	1.3e-04	44.64	Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidop...	[more]
Q9C6T2	4.9e-04	42.86	Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX...	[more]
Q9FRI5	6.4e-04	35.48	Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX...	[more]

BLAST of Spg001539 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT91	7.3e-19	84.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043310 PE=4 SV=1	[more]
A0A6J1C6R4	9.6e-19	85.96	pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charanti...	[more]
A0A5D3BIG9	8.1e-18	82.46	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BDP0	8.1e-18	82.46	pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cuc...	[more]
A0A1J7ICK8	8.7e-12	64.91	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_25806 PE=4 S...	[more]

BLAST of Spg001539 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16610.1	5.8e-08	42.86	pentatricopeptide (PPR) repeat-containing protein	[more]
AT4G19191.1	9.2e-06	44.64	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G31920.1	3.5e-05	42.86	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G25360.1	4.6e-05	35.48	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G11460.1	1.0e-04	41.30	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015:SF1934	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 1..58
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001539.1	Spg001539.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0003723	RNA binding