Spg001436 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001436
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	THO complex subunit 4A-like
Location	scaffold8: 44606627 .. 44608137 (-)
RNA-Seq Expression	Spg001436
Synteny	Spg001436

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAGAAAATCCAGATCCGGAAATTCTAGAGGTCGCGGAAGAGGTTCCGGACCTGGTCCCGTCCGTCGATTTCCCAATCGCGCCGCCAATCGTACACCTTATTCTGCTCCCAAGGTATTGTTTCGAGTTTCCGTTCGCTTCTTTTCTATTTTAGGTAGCTTCGGGGTTTGGTTCGGTTTATCCCGATTTTCCCATTCCGAATTATCGATTGAAGTTTTGTTTTGATGGTTTTGATTTGTGAAATTTGTTGTTAGGCGCCGGAGACGACTTGGCAGCATGATATGTTTGTCGATCAGGGTTCGGGGTTCCCTATGCAAGCTGGGCGAGCCCCTGCCATTCAGACTGGGACTAAGCTTTACATATCTAATTTGGATTACGGTGTTTCTAACGAAGATATTAAGGTATTTATACTTCTTGTGATTGTGTGAAAAGAGAAGAGACGATACCTTTTTGCCTTGCTGAAAGTGGTGATGTTTGCAGGAACTTTTTTCTGAGGTTGGTGATATGAAACGCTACGGAATCCACTATGACAAAAGTGGAAGATCCAAGGTATTCTACGAGGCCTGGCGTAATACTGGTTCTAGTGAATTGTTTATGTTGGTCGAAGTTTAGAAATCCTCTTTTCCATAGGGAACGGCAGAAGTAGTTTTCTCACGAAGAACAGATGCTGTGGCGGCTGTCAAGAAGTACAACAACGTGCAACTTGATGGAAAACCAATGAAGATAGAGATCGTTGGGACTAATATTGCCACACCTGCTGTTGGTCCTCCCGCTGCTGTCAACCCCTTTGAAAATTTAAATGGGGCTCCTCCTAGAAGGTATTGATCGTATTTTATATTTATGCTCAGTTCCTTGGTACAGGGGGTTCATATGCTAACGGGGTGTATTGATCATGTTTGGATTTCATGTGATGTGATATTAGCTGTTTTCTTTTTCTTGTACTGGTGAGTTTCTAATACAGCCTGCTCATCGCAGTTGGAGTAGTGAACAACTTATGTATATGGTTTATTTTAGGTTGTAGTATAGTATGTCTACTCCGGGAAATCTGCTCTTTGCTCGTTGTTTAGATTAATGAACTTTATTCAGTGTATTTTTCTTTACTTGAATCACATTTTTAAAGCTTTTTATAATGATATGGACTATGGGAACCATTTTTTTTTCTTTAATATGCACTTGTATCCAAAGCTCTTTATTATTTTCAGCCGAGTTTGTCTGGGTTTGGTGACATTCATTTTATAATAGGGGTACCATCCTCTCAGTCATCCTATTTTATATTGACATTCTTTTTAATGTGAAACAGGCAACAAGGTAGGGGTGGAATGCCATCACGTCAACGTGGTGGGGGTGGTGGTCGTGGTTTTGGAAGGGGGCGTGGGCGGGGAAGAGGCCCAAGTGAAAAGGTGTCTGCTGAAGATCTCGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAAATAAATTAA

mRNA sequence

ATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAGAAAATCCAGATCCGGAAATTCTAGAGGTCGCGGAAGAGGTTCCGGACCTGGTCCCGTCCGTCGATTTCCCAATCGCGCCGCCAATCGTACACCTTATTCTGCTCCCAAGGCGCCGGAGACGACTTGGCAGCATGATATGTTTGTCGATCAGGGTTCGGGGTTCCCTATGCAAGCTGGGCGAGCCCCTGCCATTCAGACTGGGACTAAGCTTTACATATCTAATTTGGATTACGGTGTTTCTAACGAAGATATTAAGGAACTTTTTTCTGAGGTTGGTGATATGAAACGCTACGGAATCCACTATGACAAAAGTGGAAGATCCAAGGGAACGGCAGAAGTAGTTTTCTCACGAAGAACAGATGCTGTGGCGGCTGTCAAGAAGTACAACAACGTGCAACTTGATGGAAAACCAATGAAGATAGAGATCGTTGGGACTAATATTGCCACACCTGCTGTTGGTCCTCCCGCTGCTGTCAACCCCTTTGAAAATTTAAATGGGGCTCCTCCTAGAAGGCAACAAGGTAGGGGTGGAATGCCATCACGTCAACGTGGTGGGGGTGGTGGTCGTGGTTTTGGAAGGGGGCGTGGGCGGGGAAGAGGCCCAAGTGAAAAGGTGTCTGCTGAAGATCTCGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAAATAAATTAA

Coding sequence (CDS)

ATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAGAAAATCCAGATCCGGAAATTCTAGAGGTCGCGGAAGAGGTTCCGGACCTGGTCCCGTCCGTCGATTTCCCAATCGCGCCGCCAATCGTACACCTTATTCTGCTCCCAAGGCGCCGGAGACGACTTGGCAGCATGATATGTTTGTCGATCAGGGTTCGGGGTTCCCTATGCAAGCTGGGCGAGCCCCTGCCATTCAGACTGGGACTAAGCTTTACATATCTAATTTGGATTACGGTGTTTCTAACGAAGATATTAAGGAACTTTTTTCTGAGGTTGGTGATATGAAACGCTACGGAATCCACTATGACAAAAGTGGAAGATCCAAGGGAACGGCAGAAGTAGTTTTCTCACGAAGAACAGATGCTGTGGCGGCTGTCAAGAAGTACAACAACGTGCAACTTGATGGAAAACCAATGAAGATAGAGATCGTTGGGACTAATATTGCCACACCTGCTGTTGGTCCTCCCGCTGCTGTCAACCCCTTTGAAAATTTAAATGGGGCTCCTCCTAGAAGGCAACAAGGTAGGGGTGGAATGCCATCACGTCAACGTGGTGGGGGTGGTGGTCGTGGTTTTGGAAGGGGGCGTGGGCGGGGAAGAGGCCCAAGTGAAAAGGTGTCTGCTGAAGATCTCGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAAATAAATTAA

Protein sequence

MAAPLDMSLDDIIKNNRKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFVDQGSGFPMQAGRAPAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDKSGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAVNPFENLNGAPPRRQQGRGGMPSRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

Homology

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BLAST of Spg001436 vs. NCBI nr
Match: XP_038901991.1 (THO complex subunit 4A-like [Benincasa hispida])

HSP 1 Score: 433.0 bits (1112), Expect = 1.8e-117
Identity = 226/242 (93.39%), Postives = 228/242 (94.21%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNN+KSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFVDQGSGFPMQAGRAPAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120
           HDMF D GSGF  Q GRA AIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK
Sbjct: 61  HDMFADPGSGFAGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAVNPFEN 180
           SGRSKGTAEVVFSRR DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPAVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPPRRQQGRGGMPSRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 240
           LNGA PRRQQGRGG PSRQR    GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ
Sbjct: 181 LNGA-PRRQQGRGGPPSRQR----GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 237

Query: 241 IN 243
           IN
Sbjct: 241 IN 237

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BLAST of Spg001436 vs. NCBI nr
Match: KAG7035419.1 (THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 432.2 bits (1110), Expect = 3.0e-117
Identity = 225/242 (92.98%), Postives = 230/242 (95.04%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNN+KSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 9   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 68

Query: 61  HDMFVDQGSGFPMQAGRAPAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120
           HDMFVDQG+GFP+QAGRA +IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK
Sbjct: 69  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 128

Query: 121 SGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNIAT AVGPPAAVNPFEN
Sbjct: 129 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 188

Query: 181 LNGAPPRRQQGRGGMPSRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 240
            NGA PRRQQGRGG+PSRQR   GGRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ
Sbjct: 189 FNGA-PRRQQGRGGLPSRQR---GGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 246

Query: 241 IN 243
           IN
Sbjct: 249 IN 246

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BLAST of Spg001436 vs. NCBI nr
Match: XP_022947495.1 (THO complex subunit 4A-like [Cucurbita moschata])

HSP 1 Score: 432.2 bits (1110), Expect = 3.0e-117
Identity = 225/242 (92.98%), Postives = 230/242 (95.04%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNN+KSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFVDQGSGFPMQAGRAPAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120
           HDMFVDQG+GFP+QAGRA +IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNIAT AVGPPAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 LNGAPPRRQQGRGGMPSRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 240
            NGA PRRQQGRGG+PSRQR   GGRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ
Sbjct: 181 FNGA-PRRQQGRGGLPSRQR---GGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 238

Query: 241 IN 243
           IN
Sbjct: 241 IN 238

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BLAST of Spg001436 vs. NCBI nr
Match: XP_023006955.1 (THO complex subunit 4A-like [Cucurbita maxima])

HSP 1 Score: 430.6 bits (1106), Expect = 8.7e-117
Identity = 224/242 (92.56%), Postives = 229/242 (94.63%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNN+KSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFVDQGSGFPMQAGRAPAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120
           HDMFVDQG+GFP+QAGRA +IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNIAT AVGPPAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 LNGAPPRRQQGRGGMPSRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 240
            NG  PRRQQGRGG+PSRQR   GGRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ
Sbjct: 181 FNGV-PRRQQGRGGLPSRQR---GGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 238

Query: 241 IN 243
           IN
Sbjct: 241 IN 238

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BLAST of Spg001436 vs. NCBI nr
Match: XP_023532287.1 (THO complex subunit 4A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116
Identity = 224/242 (92.56%), Postives = 229/242 (94.63%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNN+KSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRVPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFVDQGSGFPMQAGRAPAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120
           HDMFVDQG+GFP+QAGRA +IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNIAT AVGPPAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 LNGAPPRRQQGRGGMPSRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 240
            NG  PRRQQGRGG+PSRQR   GGRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ
Sbjct: 181 FNGV-PRRQQGRGGLPSRQR---GGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 238

Query: 241 IN 243
           IN
Sbjct: 241 IN 238

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BLAST of Spg001436 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.3e-72
Identity = 159/248 (64.11%), Postives = 189/248 (76.21%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  NRKSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFVDQGSGFPMQAGRAPA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYG 120
           +TW HDMF D+      ++GR+ A I+TGTKLYISNLDYGV NEDIKELF+EVG++KRY 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A   P+  
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAA--PSGR 180

Query: 181 NPFENLNGAPPRRQQGRGGMP-SRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKY 240
               N NGAP R  QGRGG      RGGGG  G GRGR  G+GP+EK+SAEDLDADL+KY
Sbjct: 181 PANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADLDKY 240

Query: 241 HAESMQIN 243
           H+  M+ N
Sbjct: 241 HSGDMETN 244

[Close]

BLAST of Spg001436 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.9e-61
Identity = 162/291 (55.67%), Postives = 182/291 (62.54%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+NRK      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFVDQGS-----GFPMQA--GRAPAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+F    S     G    A  G   +I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRYGIHYDKSGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KRYGIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIATPAVGPPAAVN-PF----------ENLNG------APPRRQQGRGGMPSRQR 240
           EIVGTN++ PA+   A    PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

[Close]

BLAST of Spg001436 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.1e-43
Identity = 125/295 (42.37%), Postives = 163/295 (55.25%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGN---SRGRGR-----GSGPGPVRRFPNRAANRTPYS-- 60
           M+  L+M+LD+I+K  + +RSG    SRGRGR     G G GP RR P  A N  P S  
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGP-LAVNARPSSFT 60

Query: 61  ----APKAPETTWQHDMFVDQGSGFPMQAGRAPAIQTGTKLYISNLDYGVSNEDIKELFS 120
                 +     WQ  +F D      ++A  A  ++ GT+L+++NLD GV+NEDI+ELFS
Sbjct: 61  INKPVRRVRSLPWQSGLFED-----GLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFS 120

Query: 121 EVGDMKRYGIHYDKSGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIAT 180
           E+G+++RY IHYDK+GR  GTAEVV+ RR+DA  A+KKYNNV LDG+PM++EI+G N ++
Sbjct: 121 EIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 180

Query: 181 PAV---------------------------------------GPPAAVN---PFENLNGA 240
            A                                        GP   V+   P  N  G 
Sbjct: 181 EAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGG 240

[Close]

BLAST of Spg001436 vs. ExPASy Swiss-Prot
Match: Q3T0I4 (THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.3e-42
Identity = 121/271 (44.65%), Postives = 152/271 (56.09%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRGRGRG-------------------SGPGPVRRFPN 60
           MA  +DMSLDDIIK NR  R G   GRGRG                    G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPA 60

Query: 61  RA--------ANR-TPYSAPKAPETTWQHDMFVDQGSGFPMQAGRAPAIQTGTKLYISNL 120
            A         NR  PYS PK     WQHD+F    SGF    G    ++TG KL +SNL
Sbjct: 61  IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLF---DSGF----GGGAGVETGGKLLVSNL 120

Query: 121 DYGVSNEDIKELFSEVGDMKRYGIHYDKSGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDG 180
           D+GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG
Sbjct: 121 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 180

Query: 181 KPMKIEIVGTNIATPAVGPPAAVNPFENLNGAPPRRQQGRGGMPSRQRGGGGG-----RG 237
           +PM I++V + I T          P +++N     R +G GG      GGGGG     RG
Sbjct: 181 RPMNIQLVTSQIDTQR-------RPAQSVNRGGMTRNRGSGGF-----GGGGGTRRGTRG 240

[Close]

BLAST of Spg001436 vs. ExPASy Swiss-Prot
Match: Q86V81 (THO complex subunit 4 OS=Homo sapiens OX=9606 GN=ALYREF PE=1 SV=3)

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-41
Identity = 120/271 (44.28%), Postives = 152/271 (56.09%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRGRGRG-------------------SGPGPVRRFPN 60
           MA  +DMSLDDIIK NR  R G   GRGRG                    G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPA 60

Query: 61  RA--------ANR-TPYSAPKAPETTWQHDMFVDQGSGFPMQAGRAPAIQTGTKLYISNL 120
            A         NR  PYS PK     WQHD+F    SGF    G    ++TG KL +SNL
Sbjct: 61  IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLF---DSGF----GGGAGVETGGKLLVSNL 120

Query: 121 DYGVSNEDIKELFSEVGDMKRYGIHYDKSGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDG 180
           D+GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG
Sbjct: 121 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 180

Query: 181 KPMKIEIVGTNIATPAVGPPAAVNPFENLNGAPPRRQQGRGGMPSRQRGGGGG-----RG 237
           +PM I++V + I        A   P +++N     R +G GG      GGGGG     RG
Sbjct: 181 RPMNIQLVTSQI-------DAQRRPAQSVNRGGMTRNRGAGGF-----GGGGGTRRGTRG 240

[Close]

BLAST of Spg001436 vs. ExPASy TrEMBL
Match: A0A6J1G721 (THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.5e-117
Identity = 225/242 (92.98%), Postives = 230/242 (95.04%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNN+KSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFVDQGSGFPMQAGRAPAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120
           HDMFVDQG+GFP+QAGRA +IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNIAT AVGPPAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 LNGAPPRRQQGRGGMPSRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 240
            NGA PRRQQGRGG+PSRQR   GGRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ
Sbjct: 181 FNGA-PRRQQGRGGLPSRQR---GGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 238

Query: 241 IN 243
           IN
Sbjct: 241 IN 238

[Close]

BLAST of Spg001436 vs. ExPASy TrEMBL
Match: A0A6J1L1M6 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 4.2e-117
Identity = 224/242 (92.56%), Postives = 229/242 (94.63%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNN+KSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFVDQGSGFPMQAGRAPAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120
           HDMFVDQG+GFP+QAGRA +IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNIAT AVGPPAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 LNGAPPRRQQGRGGMPSRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 240
            NG  PRRQQGRGG+PSRQR   GGRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ
Sbjct: 181 FNGV-PRRQQGRGGLPSRQR---GGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 238

Query: 241 IN 243
           IN
Sbjct: 241 IN 238

[Close]

BLAST of Spg001436 vs. ExPASy TrEMBL
Match: A0A0A0KBU2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.8e-115
Identity = 222/242 (91.74%), Postives = 226/242 (93.39%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNN+KSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFVDQGSGFPMQAGRAPAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120
           HDMF D  SGF +Q GRA AIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+GIHYDK
Sbjct: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAVNPFEN 180
           SGRSKGTAEVVFSRR DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPAVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPPRRQQGRGGMPSRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 240
            NGA PRRQQGRGG PSRQR    G GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ
Sbjct: 181 SNGA-PRRQQGRGGPPSRQR----GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 237

Query: 241 IN 243
           IN
Sbjct: 241 IN 237

[Close]

BLAST of Spg001436 vs. ExPASy TrEMBL
Match: A0A1S3BK70 (THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.2e-115
Identity = 222/242 (91.74%), Postives = 226/242 (93.39%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNN+KSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFVDQGSGFPMQAGRAPAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120
           HDMF D  SGF  Q GRA AIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+GIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAVNPFEN 180
           SGRSKGTAEVVFSRR DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPAVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPPRRQQGRGGMPSRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 240
            NGA PRRQQGRGG PSRQR    GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ
Sbjct: 181 SNGA-PRRQQGRGGPPSRQR----GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 237

Query: 241 IN 243
           IN
Sbjct: 241 IN 237

[Close]

BLAST of Spg001436 vs. ExPASy TrEMBL
Match: A0A6J1D4W8 (THO complex subunit 4A-like OS=Momordica charantia OX=3673 GN=LOC111017043 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.4e-114
Identity = 223/244 (91.39%), Postives = 228/244 (93.44%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSR-GRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTW 60
           MAAPLDMSLDDIIKNN+KSRSGNSR GRGR SGPGPVRRFPNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60

Query: 61  QHDMFVDQGSGFPMQAGRAPAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYD 120
           QHDMF+DQ SGF +QAGRA AIQTGTKLYISNLDYGVSNEDIKELFSEVGDMK Y IHYD
Sbjct: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120

Query: 121 KSGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAVNPFE 180
           KSGRSKGTAEVVFSRR DAVAAVKKYNNVQLDGKPMKIEIVGTNIATPA  P AAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180

Query: 181 NLNGAPPRRQQGRGGMPSRQR-GGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAES 240
           NLNG  PRRQQGRGG+PSRQR GGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAES
Sbjct: 181 NLNGF-PRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAES 240

Query: 241 MQIN 243
           MQIN
Sbjct: 241 MQIN 243

[Close]

BLAST of Spg001436 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 273.5 bits (698), Expect = 1.7e-73
Identity = 159/248 (64.11%), Postives = 189/248 (76.21%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  NRKSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFVDQGSGFPMQAGRAPA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYG 120
           +TW HDMF D+      ++GR+ A I+TGTKLYISNLDYGV NEDIKELF+EVG++KRY 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A   P+  
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAA--PSGR 180

Query: 181 NPFENLNGAPPRRQQGRGGMP-SRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKY 240
               N NGAP R  QGRGG      RGGGG  G GRGR  G+GP+EK+SAEDLDADL+KY
Sbjct: 181 PANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADLDKY 240

Query: 241 HAESMQIN 243
           H+  M+ N
Sbjct: 241 HSGDMETN 244

[Close]

BLAST of Spg001436 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 270.0 bits (689), Expect = 1.8e-72
Identity = 159/249 (63.86%), Postives = 189/249 (75.90%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  NRKSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFVDQGSGFPMQAGRAPA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYG 120
           +TW HDMF D+      ++GR+ A I+TGTKLYISNLDYGV NEDIKELF+EVG++KRY 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A   P+  
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAA--PSGR 180

Query: 181 NPFENLNGAP-PRRQQGRGGMP-SRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEK 240
               N NGAP  R  QGRGG      RGGGG  G GRGR  G+GP+EK+SAEDLDADL+K
Sbjct: 181 PANGNSNGAPWSRGGQGRGGQQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADLDK 240

Query: 241 YHAESMQIN 243
           YH+  M+ N
Sbjct: 241 YHSGDMETN 245

[Close]

BLAST of Spg001436 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 266.9 bits (681), Expect = 1.6e-71
Identity = 158/248 (63.71%), Postives = 188/248 (75.81%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  NRKSR  +G +RG G GSGPGP RR  PNR + R+ PY +  APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQS--APE 60

Query: 61  TTWQHDMFVDQGSGFPMQAGRAPA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYG 120
           +TW HDMF D+      ++GR+ A I+TGTKLYISNLDYGV NEDIKELF+EVG++KRY 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAVGPPAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A   P+  
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAA--PSGR 180

Query: 181 NPFENLNGAPPRRQQGRGGMP-SRQRGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKY 240
               N NGAP R  QGRGG      RGGGG  G GRGR  G+GP+EK+SAEDLDADL+KY
Sbjct: 181 PANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADLDKY 240

Query: 241 HAESMQIN 243
           H+  M+ N
Sbjct: 241 HSGDMETN 242

[Close]

BLAST of Spg001436 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-62
Identity = 162/291 (55.67%), Postives = 182/291 (62.54%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+NRK      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFVDQGS-----GFPMQA--GRAPAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+F    S     G    A  G   +I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRYGIHYDKSGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KRYGIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIATPAVGPPAAVN-PF----------ENLNG------APPRRQQGRGGMPSRQR 240
           EIVGTN++ PA+   A    PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

[Close]

BLAST of Spg001436 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-62
Identity = 160/289 (55.36%), Postives = 180/289 (62.28%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNRKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+NRK      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFVDQGS-----GFPMQA--GRAPAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+F    S     G    A  G   +I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRYGIHYDKSGRSKGTAEVVFSRRTDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KRYGIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIATPAVGPPAAVN-PFE--------------NLNGAPPRRQQGRGGMPSRQRGG 240
           EIVGTN++ PA+   A    PF               N NG      +GRGG   R RGG
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPRGG 240

The following BLAST results are available for this feature:

BLAST of Spg001436 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901991.1	1.8e-117	93.39	THO complex subunit 4A-like [Benincasa hispida]	[more]
KAG7035419.1	3.0e-117	92.98	THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022947495.1	3.0e-117	92.98	THO complex subunit 4A-like [Cucurbita moschata]	[more]
XP_023006955.1	8.7e-117	92.56	THO complex subunit 4A-like [Cucurbita maxima]	[more]
XP_023532287.1	1.1e-116	92.56	THO complex subunit 4A-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg001436 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L773	2.3e-72	64.11	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	1.9e-61	55.67	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q6NQ72	5.1e-43	42.37	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q3T0I4	4.3e-42	44.65	THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1	[more]
Q86V81	1.6e-41	44.28	THO complex subunit 4 OS=Homo sapiens OX=9606 GN=ALYREF PE=1 SV=3	[more]

BLAST of Spg001436 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G721	1.5e-117	92.98	THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 S...	[more]
A0A6J1L1M6	4.2e-117	92.56	THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=...	[more]
A0A0A0KBU2	1.8e-115	91.74	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV...	[more]
A0A1S3BK70	5.2e-115	91.74	THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 P...	[more]
A0A6J1D4W8	4.4e-114	91.39	THO complex subunit 4A-like OS=Momordica charantia OX=3673 GN=LOC111017043 PE=4 ...	[more]

BLAST of Spg001436 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59950.1	1.7e-73	64.11	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	1.8e-72	63.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	1.6e-71	63.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	1.3e-62	55.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.2	1.3e-62	55.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 165..242 e-value: 8.6E-11 score: 51.8
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 188..237 e-value: 3.0E-9 score: 37.4
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 86..158 e-value: 6.5E-19 score: 78.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 87..155 e-value: 3.6E-15 score: 55.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 85..162 score: 16.210192
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 73..223 e-value: 2.0E-26 score: 94.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..235
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..241
None	No IPR available	PANTHER	PTHR19965:SF74	CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED	coord: 1..241
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 85..159 e-value: 1.52307E-47 score: 150.097
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 22..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001436.1	Spg001436.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding