Spg001370 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg001370
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2
Locationscaffold8: 40542214 .. 40545794 (-)
RNA-Seq ExpressionSpg001370
SyntenySpg001370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAGCAGCCGAGAAGCAAGAGTCGAGTTCTTCTTGTTGATCGTCTGGACTAAAAACAACTTTCAGAATCTATCATTTCTTCGGATTAACAATGGCCTCCATTGGCGCTAGGTCTGTTTTTCGGTCATTTTCCGGTTCTGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCCGGCCGTCGAGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGCGTTTCTTAATGCATTTGTTTCCATTAAAAGTGCCAAAAGATTTCTAATCAATAGCTCTCTGAGTTTTTTTTTGCTCGCCCAAAAGGAGAAACATTTCAATAAGTATGGTAATATATTTGGCTTATGAAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGCTGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGTGCGCTAACTGATAACTCAATTCTCCACTTTCTTTATCTGTCATGAGCTAGATCGAAAGAGAAAAGGACGATATAATAAATTTGTATAGTTTAGAATTTAGATCATACCTATAACTTCAGAATGACTGCTGCCTTGGACTAGAAATAGAGTCGGTAATTTCCTGGAAGTTGATTTTTTTTATTTGTATTAGTTCTTCGTTGGATGAATTTCAGCTTTATAATATTTTCATGAATCAAGAAAGAAAGTTGTAGTTTGAGTGGGGATAATGATCAATTTTATTTAGAAATAGTGATATCTTTATAAAGGTTTAGCGGTTACATTAGCCCCATTAGCCAAGCCACATTAACCGGATGTTTCTGGAGGATGAAAGATCTATGTGATTTAAGTAGCTAATGTCTATGAACCATCAGGAGCTACACCATGAAAATATTTCTTTTGGGTTAAATTTAGTACTGATATGGATTCTCATGCCAAGTAACTTGTAATTGTCCGTAAGAATTTCCTGTGTACACAAAGTTGGATGTGTTAACGCTAGTTTTATGATATCTCTTCATGAGCTTTTTTTTCTTACTATTGACTATTTCTGGTTTCTCCACTTCATATAAAACTTGTAATCATAGAGATTCCTGATCCAGCTCCGTAATTTTCTTGATTTTTTGTTTTGAAAGGAGAAGTGGATCTGCTTCTAGGTTGTCTAACTAGTGGATTTTTTACTCTTGAATTAGGTAGCTAGCACACTTTATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGTGAGTTGGTGCCTATAAACTTGTATAGGGCTGATAAAATTGAACGGAATTATATAATAACATGCATGCACAACAACTTGATCATCTTTTCCCCTCAGTTAGACAGTTTATTACATCTAGTAGATAATCTTCAAATTAGGACGCAAACAAGCTTAACGGACAATAATGTTTCATTCTCTCTTTTCTTCACCTCCCATGACCCATACTTGGATCAGAGTTAAGTCCTTTTGCTGAACTCGGGTGTTATAAACCTTCTCTTCATTGTTTTTTTATTCTCACTAGAATGAGTCATTTATAAGAAAACCCTCCATTCTTTATTCAAACTGTTAATTAAAAAAGTACATTCCCCTGTTTTCAATGTAGGCAAAGACAAGACTAGATGAGGATCGAGAAGCAGGAAGGAATGACTTGAGTTGTTTTCTGAGTTTCACCTTTTAAGTCCTAGGCGATGCATAACCCCCTGCCCCACCCCCAAGACAAAAAAAGGGAAAAAAAACTTTTAGGCGATGATATCATCAATAGGTTAAATGAGATGATTGTATTTGGAATTAAATAATGAACTCTGATATTCTATTCCGTTCACTGTGTTTGTAGATTGTTGTCTTTTAAAGTATTAAAGGATCATATATTCAATTTAATTCTGCAACTATATTGGATTACAGATTACTAGATCCCTGCAGAATAAATTTTGTTTCTAAATAGTTTATTGTTTGCTGTTTTGCAAAACTTACTTTTGTTTATCAAGTTTTTGGTACTGTTGATTTGTTGTTTTCCCAATTCCTCTACTTCATAAAGATGGGGGTTGCAAATTCAACAGTATGTGTCTATGTGACTCTGACCATCAAGTATCATGCAAAGGAGTTTGAAGTAAGCTAAATCATGTGTCGGTTGTTTAACTAAAATGGAGTTATTTTATTTACCATTATTGAGCTCTTTAAGTCAAGAAATAGTTATTGATGTCACCAAACATATGGAGTTTGCAGTTTTAGATACACGTACCTATTTTTCTTTTTTCCAATCTAATTTAAGGATGATTGATGAAAAATTAGTCTTAACTTTTTTTAATAATACTTTGAAATATCTTGGGAAAAAAATTGCTTCCAACTAAAATGAATTCTGTAGTTTCCATGATCCAAACTTAGGTCCAAACTTTCCACCTTTTACGTCTAGACTAGAAAATGTCAATCTATATATCTCTTTGATGAGCATGCTGAACACCTCCCAAATTGTTTCTTGATTTGACTGGAAGATCAAACTGACATTAATTACACACTGATCACCTGTGTTCATCAGCATGCAATGATGATCTATGATAAATGACAAGGATCTGAGGAAGTTCTTTATCCAACTCTCCATACGGACAGTGCTTTCTATTAACTAGAAGCTTCCAAGCTCCAGTTGGTGATTAGTGAAGAAGAGCTTCTGATCAATGGCAATGGTTGATTGTTATTTGAAGACTAGTCTAAACTTGTAATGCCCAATATGTTCATCATAGACTTGATGCTCAATGTAGTACATGTTGATTGTTGACATTTATACGTGACCGTATTAACGTTTTCATTAAGCAATTGAATGCGTTGTTTTCTTGCTTGAAAAGTGGGTTTGTATTTTGTAGTAGTTTCGACAGAAGTTACTTGAAATCTGTGAGATAGTGATGCATGGTTGAATAGGAGTGTCTTGATTAATATATCAAAGTGAAAATTCTCAAACCAGACAGCGCACTTTTTAATATTGCCCCCTCGTAGTATTGCTGCCAACTCCTTATCTTAGCCAACTTCGCTCTTCTAAGGCTGATTGCCTCTTGTTTTGTTGTTTTCTAGGGCGGTGATATCCAATGAGCATGTCTAGCATGAAGGTTTGCAACAATGTTGAACTAGCCATTTTCATTGCCCGTCTGTGCCTCAAGCCGTCTTAATCTATCTGAGTTTTAACAGATTCTTTTCATATCCTATCTTTGCCCATATATTCTGAACTCTGTTTTCTGGCTGTACATTGGATACGATCCAATGTAGATCATCTGCAGACATCCTATTACATCTTTTATGTTAAACAGTAGTTGAATTAATGATATAATGATCTAAATCAGAATCTAGATGCGAGGACAGCTTCCAGTTAATGATTTGCTCAGTTTATAGCATGAGACCAAATTATGTTTGTTTGTTTTTTGCTCAACCATGTTCTAATGTTTTTATTTAGTATGAGGTTCGATTTGATCCAGGAACAAACTACACAAATTTGGTTGGAAATGAAATAGGGATTAGTTCCTACCAATGTTCATGTATAAGTTTGAATATGAAATGATTGAC

mRNA sequence

ATGGCCTCCATTGGCGCTAGGTCTGTTTTTCGGTCATTTTCCGGTTCTGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCCGGCCGTCGAGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGCTGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGTTTTTGGTACTGTTGATTTGTTGTTTTCCCAATTCCTCTACTTCATAAAGATGGGGGTTGCAAATTCAACAGTATGTGTCTATGTGACTCTGACCATCAAGTATCATGCAAAGGAGTTTGAAGGCGGTGATATCCAATGA

Coding sequence (CDS)

ATGGCCTCCATTGGCGCTAGGTCTGTTTTTCGGTCATTTTCCGGTTCTGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCCGGCCGTCGAGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGCTGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGTTTTTGGTACTGTTGATTTGTTGTTTTCCCAATTCCTCTACTTCATAAAGATGGGGGTTGCAAATTCAACAGTATGTGTCTATGTGACTCTGACCATCAAGTATCATGCAAAGGAGTTTGAAGGCGGTGATATCCAATGA

Protein sequence

MASIGARSVFRSFSGSARRAAAQIGSQARPSSSPFRMATNKPLSHRTFRCAAEMSFCLESLMPFHSASSSALMTSMLSISRRSCGWLPEVFGTVDLLFSQFLYFIKMGVANSTVCVYVTLTIKYHAKEFEGGDIQ
Homology
[Close]
BLAST of Spg001370 vs. NCBI nr
Match: XP_022140728.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Momordica charantia])

HSP 1 Score: 159.1 bits (401), Expect = 2.7e-35
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQARPSSSPFRMATNKPLSHRTFRCAAEMSFCLES 60
          MAS+GARSVFRSFSGSARRAAA IGS+AR SSSPFRMATNKPLSHRTFRCAAEMSFCLES
Sbjct: 1  MASLGARSVFRSFSGSARRAAAHIGSEARASSSPFRMATNKPLSHRTFRCAAEMSFCLES 60

Query: 61 LMPFHSASSSALMTSMLSISRRSCGWLPE 90
          +MPFHSASSSALMTSMLSISR SCGWLPE
Sbjct: 61 MMPFHSASSSALMTSMLSISRNSCGWLPE 89

[Close]
BLAST of Spg001370 vs. NCBI nr
Match: XP_022140726.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Momordica charantia])

HSP 1 Score: 159.1 bits (401), Expect = 2.7e-35
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQARPSSSPFRMATNKPLSHRTFRCAAEMSFCLES 60
          MAS+GARSVFRSFSGSARRAAA IGS+AR SSSPFRMATNKPLSHRTFRCAAEMSFCLES
Sbjct: 1  MASLGARSVFRSFSGSARRAAAHIGSEARASSSPFRMATNKPLSHRTFRCAAEMSFCLES 60

Query: 61 LMPFHSASSSALMTSMLSISRRSCGWLPE 90
          +MPFHSASSSALMTSMLSISR SCGWLPE
Sbjct: 61 MMPFHSASSSALMTSMLSISRNSCGWLPE 89

[Close]
BLAST of Spg001370 vs. NCBI nr
Match: XP_022140727.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Momordica charantia])

HSP 1 Score: 159.1 bits (401), Expect = 2.7e-35
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQARPSSSPFRMATNKPLSHRTFRCAAEMSFCLES 60
          MAS+GARSVFRSFSGSARRAAA IGS+AR SSSPFRMATNKPLSHRTFRCAAEMSFCLES
Sbjct: 1  MASLGARSVFRSFSGSARRAAAHIGSEARASSSPFRMATNKPLSHRTFRCAAEMSFCLES 60

Query: 61 LMPFHSASSSALMTSMLSISRRSCGWLPE 90
          +MPFHSASSSALMTSMLSISR SCGWLPE
Sbjct: 61 MMPFHSASSSALMTSMLSISRNSCGWLPE 89

[Close]
BLAST of Spg001370 vs. NCBI nr
Match: KAG7010763.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.1 bits (388), Expect = 8.8e-34
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQARPSSS-PFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQA+ SSS PFRMAT KPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SLMPFHSASSSALMTSMLSISRRSCGWLPE 90
          S+MPFHSASSSALMTSMLS+SR SCGWLPE
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPE 90

[Close]
BLAST of Spg001370 vs. NCBI nr
Match: KAG6570920.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.1 bits (388), Expect = 8.8e-34
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQARPSSS-PFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQA+ SSS PFRMAT KPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SLMPFHSASSSALMTSMLSISRRSCGWLPE 90
          S+MPFHSASSSALMTSMLS+SR SCGWLPE
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPE 90

[Close]
BLAST of Spg001370 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.8e-09
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 0 

Query: 5  GARSVFRSFSGSARRAAAQIG---SQARPSSSPFRMATNKPLSHRTFRCAAEMSFCLESL 64
          GARS+ R  + S+R AAA  G   SQA+ +   FR    +       R   E+SFC+ESL
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASSSALMTSMLSISRRSCGWLPE 90
          +P+HSA++SALMTS LSIS ++ GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of Spg001370 vs. ExPASy TrEMBL
Match: A0A6J1CIN8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQARPSSSPFRMATNKPLSHRTFRCAAEMSFCLES 60
          MAS+GARSVFRSFSGSARRAAA IGS+AR SSSPFRMATNKPLSHRTFRCAAEMSFCLES
Sbjct: 1  MASLGARSVFRSFSGSARRAAAHIGSEARASSSPFRMATNKPLSHRTFRCAAEMSFCLES 60

Query: 61 LMPFHSASSSALMTSMLSISRRSCGWLPE 90
          +MPFHSASSSALMTSMLSISR SCGWLPE
Sbjct: 61 MMPFHSASSSALMTSMLSISRNSCGWLPE 89

[Close]
BLAST of Spg001370 vs. ExPASy TrEMBL
Match: A0A6J1CHV9 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQARPSSSPFRMATNKPLSHRTFRCAAEMSFCLES 60
          MAS+GARSVFRSFSGSARRAAA IGS+AR SSSPFRMATNKPLSHRTFRCAAEMSFCLES
Sbjct: 1  MASLGARSVFRSFSGSARRAAAHIGSEARASSSPFRMATNKPLSHRTFRCAAEMSFCLES 60

Query: 61 LMPFHSASSSALMTSMLSISRRSCGWLPE 90
          +MPFHSASSSALMTSMLSISR SCGWLPE
Sbjct: 61 MMPFHSASSSALMTSMLSISRNSCGWLPE 89

[Close]
BLAST of Spg001370 vs. ExPASy TrEMBL
Match: A0A6J1CGX5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQARPSSSPFRMATNKPLSHRTFRCAAEMSFCLES 60
          MAS+GARSVFRSFSGSARRAAA IGS+AR SSSPFRMATNKPLSHRTFRCAAEMSFCLES
Sbjct: 1  MASLGARSVFRSFSGSARRAAAHIGSEARASSSPFRMATNKPLSHRTFRCAAEMSFCLES 60

Query: 61 LMPFHSASSSALMTSMLSISRRSCGWLPE 90
          +MPFHSASSSALMTSMLSISR SCGWLPE
Sbjct: 61 MMPFHSASSSALMTSMLSISRNSCGWLPE 89

[Close]
BLAST of Spg001370 vs. ExPASy TrEMBL
Match: A0A6J1I155 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.6e-34
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQARPSS-SPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAA IGSQAR SS SPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SLMPFHSASSSALMTSMLSISRRSCGWLPE 90
          S+MPFHSASS+A+M SMLSISRRSCGWLPE
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPE 90

[Close]
BLAST of Spg001370 vs. ExPASy TrEMBL
Match: A0A6J1I2H5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.6e-34
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0 

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQARPSS-SPFRMATNKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAA IGSQAR SS SPFRMATNKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SLMPFHSASSSALMTSMLSISRRSCGWLPE 90
          S+MPFHSASS+A+M SMLSISRRSCGWLPE
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPE 90

[Close]
BLAST of Spg001370 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 8.5e-11
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0 

Query: 6  ARSVFRSFSGSARRAAAQI--GSQARPSS--SPFRMATNKPLSHRTFRCAAEMSFCLESL 65
          ARSVFRS +  A   A +   G +  PSS  + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSISRRSCGWL 88
          +P+H+A++SAL+ SMLS+SRR  GW+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWI 87

[Close]
BLAST of Spg001370 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 8.5e-11
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0 

Query: 6  ARSVFRSFSGSARRAAAQI--GSQARPSS--SPFRMATNKPLSHRTFRCAAEMSFCLESL 65
          ARSVFRS +  A   A +   G +  PSS  + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSISRRSCGWL 88
          +P+H+A++SAL+ SMLS+SRR  GW+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWI 87

[Close]
BLAST of Spg001370 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 8.5e-11
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0 

Query: 6  ARSVFRSFSGSARRAAAQI--GSQARPSS--SPFRMATNKPLSHRTFRCAAEMSFCLESL 65
          ARSVFRS +  A   A +   G +  PSS  + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSISRRSCGWL 88
          +P+H+A++SAL+ SMLS+SRR  GW+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWI 87

[Close]
BLAST of Spg001370 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 8.5e-11
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0 

Query: 6  ARSVFRSFSGSARRAAAQI--GSQARPSS--SPFRMATNKPLSHRTFRCAAEMSFCLESL 65
          ARSVFRS +  A   A +   G +  PSS  + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSISRRSCGWL 88
          +P+H+A++SAL+ SMLS+SRR  GW+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWI 87

[Close]
BLAST of Spg001370 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). )

HSP 1 Score: 64.3 bits (155), Expect = 8.5e-11
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0 

Query: 6  ARSVFRSFSGSARRAAAQI--GSQARPSS--SPFRMATNKPLSHRTFRCAAEMSFCLESL 65
          ARSVFRS +  A   A +   G +  PSS  + FRM    PL++R FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSISRRSCGWL 88
          +P+H+A++SAL+ SMLS+SRR  GW+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWI 87

The following BLAST results are available for this feature:
BLAST of Spg001370 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022140728.12.7e-3593.26protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ... [more]
XP_022140726.12.7e-3593.26protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_022140727.12.7e-3593.26protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
KAG7010763.18.8e-3492.22Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurb... [more]
KAG6570920.18.8e-3492.22Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurb... [more]
BLAST of Spg001370 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93ZJ37.8e-0946.59Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of Spg001370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CIN81.3e-3593.26protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ... [more]
A0A6J1CHV91.3e-3593.26protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1CGX51.3e-3593.26protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1I1555.6e-3492.22protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1I2H55.6e-3492.22protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
BLAST of Spg001370 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G28395.28.5e-1146.51unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.18.5e-1146.51unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.38.5e-1146.51unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.48.5e-1146.51unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.58.5e-1146.51unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033251Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrialPANTHERPTHR33156:SF48PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIALcoord: 3..89
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 3..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg001370.1Spg001370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000741 karyogamy