Spg001293 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001293
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold8: 36970390 .. 36975444 (-)
RNA-Seq Expression	Spg001293
Synteny	Spg001293

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACGTACCTTCAAAGGTGTGTGCACAAAAGAATTGGATGTTTGATAAGATGGCAGAAACATGGGCTAAGGCTACTCGGGTCTTAGTTTATTTTGATAGTATTATTTTTGTGGTTCAAGTCTAGATGTGAATATGATGTTTTTTAGTTGTTATATATTAATTAAACAAGATCATCTAACCTTATAAAAAAATTTCCTCCTTTGGCAGGACAAGGATGAAGCAAGGAAAGAGAAGAAGAAGCGAACTCATAGGAAATCTTCAAAGAAGTCAAAACCGCAAAAACAACTGGTAAAATACATATGATATATATCTTTAGCAAATAGTTTGTACTTTTTATCTATGTTATTCGATGGTACGACATAGCTTGTTAAGTGTTGACTTGAATATTGAGATTGTTTTTCTAATGATTATTGTTTACACTTCAACCTTTTGATCATCCAGAAAGAATGTGAAGAATTGAGAGCAAAACTAGACACTCTAAACGTGAAAGTTTCAAATCTTACGAAGCAATTAAAAACATTCATGGAGGACTTTGAAACAATCAACAAAGAGAACACTTCTTTAATGGTATGACACTTGAACACTTCTTCACTACCATTATATCCTTATTAAATTTTTTTTTCTTTAGCAACCTTCCATCTCACATATTGTAAACTTTGTTTTCTTCTAGGAGAAGCTAAAGCAACAATATGAAACAAAAGGTAATAATTGATCACAAGAGTAAAGACAGCTCGTTGACACATGTATAGCAGCTCTAGAATTCATCTTACACGAAAAACGAAGATGACATCGTTTTATTAATGGTGCAAATAGTTTTATTGATCATCGTTTAGTTAATTTTAGTTTGTATTTATTTAAACATTGTGGTGTGGTGTGTTGTATTTATTTTTAGTATATTCTTTAATTGTGTATTATTTAAGTGAGTAGTGGGTAGTGTCATAGTGGTGATAGGTTTTGTAAACCCACGAAAACTATCTCCTTAAGTGTAACAAAGGGTATTTAAATCCCTCTTTGAGATTAATAAAATAACACACATTTCGCCCTAATACTCAAATCTCTAAAATTCTTACTCTGATTTTTAAGTACAAATAAAGCTGCAAAATCAACTGATATATAGTTGCATTATTGTAGGTTAAGTTGTCACAATGAGCAAAGGAACTCCAAGCATTTGCTTCACAAAACCAAAGATGCAAAATAGATTCAAGTTTGAAAAATAGCTCTCAGTTGCCTCTTTTGAAGGGATCACCTAAGAAATAGCTGTGTGGCTGTGAAAAGATCTGTATTCTTACACAATATATGCTTTTTTTTTCCTCTTCATTTTATACAGGAAAATTAAATTCAGTACTTCATTGTATACTCTTTGAAATTCAATATATCTATGAATATATAAGCCATTAATTTCTTTCTTGTTTTAGCCCCATTATTGTATTTGATTATATAGATTAAGACGAATTGGCATTTTTCGGGTATATGTTTGGTAACTACTAAAAATGACTTATTAAAAAATGAAATTGAGAAATAAATCATTTTGAGAGAAACACTTGAAAGAAAATTTTTTTAAAAGAGTTTTTGAGTATATAATAACTTAGCTTGTATATAAAAATACTTGGTCGTTAGTACAAAGTTATGCCAGTTGAGCTATGCTCATGTTGGTCGTTTGAATACATTTATTCATTCTATTAAAATTAATTTTTATAATCAACTAGATTATATTAAAATTATTTTATAATATAATGTGTATTCAATTAACCTCATTACTTATTCAATTGTAATAAATTAATAATAACTAATTGATTGGTTAAAGATATACTTAACAAATTCTCATTTGTAAAAAGGAAGAAAAACAATTTTTACCCATATGCTCGTCAAGTTGTATCAATTTTTATCCAAAACTTTTGATTTTATCAAATTGTACCCCGAACTTAAATTGAGTGTTGCAAATCTTAACATTTAACTTAAAAGAAATATTGCAATTTCTACCCTTGGTAAGGTTTCCTTTTGACAATTCATAAAAAAAAAAAATCAGGTATCCCCACATGCTTTCAATGAATTATAAAACAAATATGTATGGTCGAAAATTGATAAGATTTTCAAATAAAAACGATGTTAGAGCTACATTTTTATTAAAATTTGTGAGTTTTTGACAAAGTTATTCGATAATCAATTAGTGTAATTAATCCAACTTAAAATTTTGAAAATCTTGATATTATTGAAACTACAGAGTTTATAGATATTTTTACATTGCTTTTTGTTAAAATTACTGGAAATTGAACAAAATGGTAGTAATTGCAACATTTAACTAAGTCTAGGGTTCAATTGGATGAAATTAGAATTAGTTTGGAGTAAAAATTGACACAACCTGATATGTTTACAAGTAAAAAATTAAAATTTTCCCTTTATAAAAATGTACTAAATTAATGTAATTAAGTATTTATTGAAACTATTAATAAATAAGTAATCTATTCTACATATTTAATTAATTAAAATATTTTTGTATGAAGTTTTAACTTCTTATAATTATTTATTCGAATAAAACTATACTATACATCTATTACTCATATCGATTAATATATATAGTTGAAATACGAATTTATTAATCAATGCATCATAATTATATAACATTTATAAAATTAGCAAATTTGGGGTGGGTTACAAATAAGAATTATATAATTGCAAATATAGCACAATGTAAAAAAAATTGCAAATATAGCAAAATCTATCAGAGTATATTACTGATAGACTCTGGTTAATTAGAATCTATATGATAGACTTCGATTATCAGAGTTTATCAGCGTCTATCGCTGATAGACTCCAGTTAATCGAAATCTATCAGTGACTATCATTGATAGGCTTTGATTAATTAAACTCTATCAGTGATAGTCACTGATAAATTTGGATTAATCGGAGTCTATCAGCGATAGACACTGATAGACTTTGAATAATCAGAATCTATCAGTGATAGACACGGATAGAATCTGACGACAGGTTTTTGGACGTACAATTAATTTTGCTATATATGCAATTAGTTTGCAACTGTGCTATATTTGCTATTAATTTGGTCCAATTTTTCATCTATGCAACTACCCCATAAAATTATTCACATAAAAAAAATACTATTTATAAAATTATTCTCATATAAAAATTAGCGTTCCTAGATGTATAACCAAGCACTGCAATCTATGGTTTCCAACCATTTTATTTTCAAACATCTTATTCTCATCCATCTATTATTTCAGGAATATTAGAGAAACTTTAAGCCCCATCTCTAAGGACATGTTTGAAAGTGAGTTTAAATGGTTAAATGAGTTCTCTTATTAATTACTGCATCTTATTAAATGGTTAAAATCACTTCTTTCATGTTCAAAATCACTCCAAGTATACCTTTAATCATTTAAAATCAATTTTGATTATTATGATAATCACGTTTAAGTAAATCCAAACTTCTTATAATCAAATCATATGGTAAGGCTTATATTGCCCCCAAAAATTTATCTTCTACGGTATGATCATTGAATAATGAGACTTCAGGCTTCTCAAAAACCAGAATAGTCTTCTTTTCAAGGTGCTTCGAGGTCGATATTTTGCCCATAATAACTATCTTGAAGCTTCCCTTGGGAACAACCCATCGCTAACCTGGAGGAGCATTCTTTGGGGCAGAGATCTCTTTAAAAAAGGGATGAAATTGAGAGTGGGTAATGGCCTTCATATTCGGATCAAAGAGGACCCGTGGCTTCCTAGGTCGGGATGTTATACTCCTCTCTAGATTAAAGAAGAGCTCTATGGAAAAAATGTTGAGTTCTTAATTGATGAATATGGCCACTGGAAAGAAGATTTGATTAGAGCATCCTTTTTAACCCCCGACTCAGACTCGATTCTTGAGATCCCTCTTGGTAACAGGGATGTTAAGGATGTCATCATCTGGGGTCCGGACACAAAAGGCCTTTTCTCGGTTAAGAGTGCTTATCATCTAGCCTATAATCTTTCTCAGGCCGGAAAAGGCTCTTCCTCTGATTCCTATCCGATCACCTCTTTTTGGAGAAGTTTTTGGAAAGTGAGCTCTGCTCCTAGAGATAAGATTTGCACTTGGAGAATGATTCAAAACTCTCTCCCTACTCAAGCCAACATCTTAGCTAAAGGCATAGATATTAATCCTCTTTGTTTTTTTTGCAGGAACAAAACTGAATCCGGGGAACATCTTTTCTGGCAATGCAAAAGCTCAAAAGAGGTTTGGCTTTATTTTTTTCCCAAGCTGAATTTGGTCTCAAATTTTTTCAGGGGTGAGCTGGTAGATAGCTCAAAGGAGGTTGATATTTCTATAGCTATGAAGATTATCTGGAGTATTTGGTACTTTAGGAATTCTATCAAGAGGGGAGCAGGCTTTCCAGATGCCAAAAGTATCATCAGAATGGTTAATAGCAGTTATTGTGAGAAAAATCACCTGATTGGCGGCGCTCCAATTCGCTTCAGCCCGGAGAACCTCTCGAGTCAGAGGCCTTGGTCTCCCCCTCCCCTCGGCGTCTGGAAAATTAATTCTGATGCTTCGTGGTCGGAAGATCAACAGCGGGGTGGTCTCGGATGGATTGCCCATGACTCTACAGGTTCTCTTCTCTGTGCTGGTTTCAAACAAATCAATAGAAAATGGCCAATCAAGTGTTTAGAGCTGGAAGCTATGGCGGTGGGTCTGAAGAACTTACTTTCTCATTTGGAGAGGCCTTTTCCGAGGATTATAATCGAAGCGGACTCTTCCGAAGTGATTTCCATCCTCAATCATCGATCAGATGACATTTCCGAAGCTTGGATTGTGGCAAAGAAGGTTGCTGATCTTGCTGCTTTGGTGGGCGACGTTACCTTCTCTTTCAGTCCGCGGGAATCAAATGTCGAAGCGCACTCGTTGGCGTGTTTTGCTGTTGCTCTGAATCTTTTGGATAGTTCTAATTTTTTGGCTTCTTCCATTTCGGAAGAAGGTGTTTTCTGTAAAGAGGTTCTACCTCATTTATTAAACTCTTCCTTTCCTGGGAAGAGTATTTGTTTGGCTGGTGGTGGTTTTTAA

mRNA sequence

ATGGAAAACGTACCTTCAAAGGACAAGGATGAAGCAAGGAAAGAGAAGAAGAAGCGAACTCATAGGAAATCTTCAAAGAAGTCAAAACCGCAAAAACAACTGGAGAAGCTAAAGCAACAATATGAAACAAAAGGAACAAAACTGAATCCGGGGAACATCTTTTCTGGCAATGCAAAAGCTCAAAAGAGGAATTCTATCAAGAGGGGAGCAGGCTTTCCAGATGCCAAAAGTATCATCAGAATGGTTAATAGCAGTTATTGTGAGAAAAATCACCTGATTGGCGGCGCTCCAATTCGCTTCAGCCCGGAGAACCTCTCGAGTCAGAGGCCTTGGTCTCCCCCTCCCCTCGGCGTCTGGAAAATTAATTCTGATGCTTCGTGGTCGGAAGATCAACAGCGGGGTGGTCTCGGATGGATTGCCCATGACTCTACAGGTTCTCTTCTCTGTGCTGGTTTCAAACAAATCAATAGAAAATGGCCAATCAAGTGTTTAGAGCTGGAAGCTATGGCGGTGGGTCTGAAGAACTTACTTTCTCATTTGGAGAGGCCTTTTCCGAGGATTATAATCGAAGCGGACTCTTCCGAAGTGATTTCCATCCTCAATCATCGATCAGATGACATTTCCGAAGCTTGGATTGTGGCAAAGAAGGTTGCTGATCTTGCTGCTTTGGTGGGCGACGTTACCTTCTCTTTCAGTCCGCGGGAATCAAATGTCGAAGCGCACTCGTTGGCGTGTTTTGCTGTTGCTCTGAATCTTTTGGATAGTTCTAATTTTTTGGCTTCTTCCATTTCGGAAGAAGGTGTTTTCTGTAAAGAGGTTCTACCTCATTTATTAAACTCTTCCTTTCCTGGGAAGAGTATTTGTTTGGCTGGTGGTGGTTTTTAA

Coding sequence (CDS)

ATGGAAAACGTACCTTCAAAGGACAAGGATGAAGCAAGGAAAGAGAAGAAGAAGCGAACTCATAGGAAATCTTCAAAGAAGTCAAAACCGCAAAAACAACTGGAGAAGCTAAAGCAACAATATGAAACAAAAGGAACAAAACTGAATCCGGGGAACATCTTTTCTGGCAATGCAAAAGCTCAAAAGAGGAATTCTATCAAGAGGGGAGCAGGCTTTCCAGATGCCAAAAGTATCATCAGAATGGTTAATAGCAGTTATTGTGAGAAAAATCACCTGATTGGCGGCGCTCCAATTCGCTTCAGCCCGGAGAACCTCTCGAGTCAGAGGCCTTGGTCTCCCCCTCCCCTCGGCGTCTGGAAAATTAATTCTGATGCTTCGTGGTCGGAAGATCAACAGCGGGGTGGTCTCGGATGGATTGCCCATGACTCTACAGGTTCTCTTCTCTGTGCTGGTTTCAAACAAATCAATAGAAAATGGCCAATCAAGTGTTTAGAGCTGGAAGCTATGGCGGTGGGTCTGAAGAACTTACTTTCTCATTTGGAGAGGCCTTTTCCGAGGATTATAATCGAAGCGGACTCTTCCGAAGTGATTTCCATCCTCAATCATCGATCAGATGACATTTCCGAAGCTTGGATTGTGGCAAAGAAGGTTGCTGATCTTGCTGCTTTGGTGGGCGACGTTACCTTCTCTTTCAGTCCGCGGGAATCAAATGTCGAAGCGCACTCGTTGGCGTGTTTTGCTGTTGCTCTGAATCTTTTGGATAGTTCTAATTTTTTGGCTTCTTCCATTTCGGAAGAAGGTGTTTTCTGTAAAGAGGTTCTACCTCATTTATTAAACTCTTCCTTTCCTGGGAAGAGTATTTGTTTGGCTGGTGGTGGTTTTTAA

Protein sequence

MENVPSKDKDEARKEKKKRTHRKSSKKSKPQKQLEKLKQQYETKGTKLNPGNIFSGNAKAQKRNSIKRGAGFPDAKSIIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFAVALNLLDSSNFLASSISEEGVFCKEVLPHLLNSSFPGKSICLAGGGF

Homology

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BLAST of Spg001293 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-16
Identity = 52/143 (36.36%), Postives = 86/143 (60.14%), Query Frame = 0


Query: 103 ENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIK 162
           + L+++  W PPP+ +W +N+DASWS+   RGG+GWI     G ++ AG + +     +K
Sbjct: 63  KTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVK 122

Query: 163 CLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADLA 222
            LE  A+  GL+NL +  + RP   + IE DS+EV S+LN + +D+++   V +++ +L 
Sbjct: 123 LLEASAILEGLRNLTNLGVLRP---LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLR 182

Query: 223 ALVGDVTFSFSPRESNVEAHSLA 245
                + F+   RE+N  AHSLA
Sbjct: 183 DSCEILAFAKVGRETNGCAHSLA 202

[Close]

BLAST of Spg001293 vs. NCBI nr
Match: CAB4274760.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-13
Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = 0


Query: 78   IIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLG 137
            +++ V+     K+ L    P    P +  +   W  P LG+ K+N DA+WS  +  GG+G
Sbjct: 1094 LLKQVSEFRTAKHDLQDLQPQPLQPASSPAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVG 1153

Query: 138  WIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEV 197
            W+  DS G LLCAG +          +EL A+   L    + HL      II+E+DS + 
Sbjct: 1154 WVIRDSFGLLLCAGGQGDLHGSSAIMMELLAIRHALSECANFHL----TDIIVESDSQKG 1213

Query: 198  ISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA 248
            I +LN R+   S+   +   +  L A +  V+F F+PR  N  AHS+A FA
Sbjct: 1214 ILMLNGRATVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVAGFA 1260

[Close]

BLAST of Spg001293 vs. NCBI nr
Match: CAB4274761.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-13
Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = 0


Query: 78  IIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLG 137
           +++ V+     K+ L    P    P +  +   W  P LG+ K+N DA+WS  +  GG+G
Sbjct: 226 LLKQVSEFRTAKHDLQDLQPQPLQPASSPAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVG 285

Query: 138 WIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEV 197
           W+  DS G LLCAG +          +EL A+   L    + HL      II+E+DS + 
Sbjct: 286 WVIRDSFGLLLCAGGQGDLHGSSAIMMELLAIRHALSECANFHL----TDIIVESDSQKG 345

Query: 198 ISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA 248
           I +LN R+   S+   +   +  L A +  V+F F+PR  N  AHS+A FA
Sbjct: 346 ILMLNGRATVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVAGFA 392

[Close]

BLAST of Spg001293 vs. NCBI nr
Match: CAB4303756.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 83.2 bits (204), Expect = 4.1e-12
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = 0


Query: 97  PIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQIN 156
           P    P +  +   W  PP G+ K+N DA+WS  +  GG+GW+  DS G LLCAG +   
Sbjct: 782 PQPLQPVSSPAPLSWCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDL 841

Query: 157 RKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAK 216
                  +EL A+   L    + HL      II+E+DS + I +LN R+   S+   +  
Sbjct: 842 HGSSAIMMELLAIRHALSECANFHL----TDIIVESDSQKGILMLNGRATVDSDLEGIVF 901

Query: 217 KVADLAALVGDVTFSFSPRESNVEAHSLACF 247
            +  L A +  V+F F+PR  N  AHS+A F
Sbjct: 902 DIRQLVASLSRVSFVFAPRSCNQAAHSVAGF 928

[Close]

BLAST of Spg001293 vs. NCBI nr
Match: XP_024046691.1 (uncharacterized protein LOC112101027 [Citrus clementina])

HSP 1 Score: 82.8 bits (203), Expect = 5.4e-12
Identity = 48/148 (32.43%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 101 SPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWP 160
           S ++ ++Q+ W  PP G +K+N DA+   +QQR G+G +  +S G ++ A  K       
Sbjct: 116 SQQSTANQKQWKHPPEGWFKVNVDAAVRVEQQRTGMGIVIRNSRGKVMAAAMKPSKFIGK 175

Query: 161 IKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADL 220
           +   + EA+  GL+  ++   R FP +I+E+DS EV+ ++N ++   +E + VA +V D 
Sbjct: 176 VDYAKAEAIRFGLE--IAENVRCFP-LIVESDSQEVVDLINSKTSSRAEIFWVASEVQDR 235

Query: 221 AALVGDVTFSFSPRESNVEAHSLACFAV 249
              +  V    +PR  N  AHSLA  A+
Sbjct: 236 MKRLNQVKVQHTPRGCNTLAHSLARLAL 260

[Close]

BLAST of Spg001293 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.9e-17
Identity = 52/143 (36.36%), Postives = 86/143 (60.14%), Query Frame = 0


Query: 103 ENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIK 162
           + L+++  W PPP+ +W +N+DASWS+   RGG+GWI     G ++ AG + +     +K
Sbjct: 63  KTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVK 122

Query: 163 CLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADLA 222
            LE  A+  GL+NL +  + RP   + IE DS+EV S+LN + +D+++   V +++ +L 
Sbjct: 123 LLEASAILEGLRNLTNLGVLRP---LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLR 182

Query: 223 ALVGDVTFSFSPRESNVEAHSLA 245
                + F+   RE+N  AHSLA
Sbjct: 183 DSCEILAFAKVGRETNGCAHSLA 202

[Close]

BLAST of Spg001293 vs. ExPASy TrEMBL
Match: A0A6J5UE59 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23353 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.1e-14
Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = 0


Query: 78   IIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLG 137
            +++ V+     K+ L    P    P +  +   W  P LG+ K+N DA+WS  +  GG+G
Sbjct: 1094 LLKQVSEFRTAKHDLQDLQPQPLQPASSPAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVG 1153

Query: 138  WIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEV 197
            W+  DS G LLCAG +          +EL A+   L    + HL      II+E+DS + 
Sbjct: 1154 WVIRDSFGLLLCAGGQGDLHGSSAIMMELLAIRHALSECANFHL----TDIIVESDSQKG 1213

Query: 198  ISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA 248
            I +LN R+   S+   +   +  L A +  V+F F+PR  N  AHS+A FA
Sbjct: 1214 ILMLNGRATVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVAGFA 1260

[Close]

BLAST of Spg001293 vs. ExPASy TrEMBL
Match: A0A6J5UF50 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23354 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.1e-14
Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = 0


Query: 78  IIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLG 137
           +++ V+     K+ L    P    P +  +   W  P LG+ K+N DA+WS  +  GG+G
Sbjct: 226 LLKQVSEFRTAKHDLQDLQPQPLQPASSPAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVG 285

Query: 138 WIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEV 197
           W+  DS G LLCAG +          +EL A+   L    + HL      II+E+DS + 
Sbjct: 286 WVIRDSFGLLLCAGGQGDLHGSSAIMMELLAIRHALSECANFHL----TDIIVESDSQKG 345

Query: 198 ISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA 248
           I +LN R+   S+   +   +  L A +  V+F F+PR  N  AHS+A FA
Sbjct: 346 ILMLNGRATVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVAGFA 392

[Close]

BLAST of Spg001293 vs. ExPASy TrEMBL
Match: A0A6J5WPU6 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20372 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-12
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = 0


Query: 97  PIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQIN 156
           P    P +  +   W  PP G+ K+N DA+WS  +  GG+GW+  DS G LLCAG +   
Sbjct: 782 PQPLQPVSSPAPLSWCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDL 841

Query: 157 RKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAK 216
                  +EL A+   L    + HL      II+E+DS + I +LN R+   S+   +  
Sbjct: 842 HGSSAIMMELLAIRHALSECANFHL----TDIIVESDSQKGILMLNGRATVDSDLEGIVF 901

Query: 217 KVADLAALVGDVTFSFSPRESNVEAHSLACF 247
            +  L A +  V+F F+PR  N  AHS+A F
Sbjct: 902 DIRQLVASLSRVSFVFAPRSCNQAAHSVAGF 928

[Close]

BLAST of Spg001293 vs. ExPASy TrEMBL
Match: A0A6J5VSP2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51717 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-12
Identity = 52/151 (34.44%), Postives = 76/151 (50.33%), Query Frame = 0


Query: 97  PIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQIN 156
           P    P +  +   W  PP G+ K+NSDA+WS  +  GG+GW+  DS G LLCAG +   
Sbjct: 275 PQPLQPVSSPAPLSWCKPPPGLLKVNSDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDL 334

Query: 157 RKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAK 216
                  +EL A+   L    + HL      II+E+DS + I +LN R+   S+   +  
Sbjct: 335 HGSSALMMELLAIRHALSECANFHL----TDIIVESDSQKGILMLNGRATVDSDLEGIVF 394

Query: 217 KVADLAALVGDVTFSFSPRESNVEAHSLACF 247
            +  L A +  V+F F+P   N   HS+A F
Sbjct: 395 DIRQLVASLSRVSFVFAPSSCNQATHSVAGF 421

[Close]

BLAST of Spg001293 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-12
Identity = 49/145 (33.79%), Postives = 71/145 (48.97%), Query Frame = 0


Query: 104 NLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKC 163
           N SS   W PPP    K N+DA+W+ D +R G+GW+  +  G +   G + + +   +  
Sbjct: 413 NRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLE 472

Query: 164 LELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAK-KVADLAA 223
            ELEAM      +LS     +  +I E+DS  +I ILN+      E W   K  + DL  
Sbjct: 473 AELEAMRWA---VLSLSRFQYNYVIFESDSQVLIEILNN-----DEIWPSLKPTIQDLQR 532

Query: 224 LVG---DVTFSFSPRESNVEAHSLA 245
           L+    +V F F PRE N  A  +A
Sbjct: 533 LLSQFTEVKFVFIPREGNTLAERVA 549

[Close]

BLAST of Spg001293 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-11
Identity = 55/189 (29.10%), Postives = 88/189 (46.56%), Query Frame = 0


Query: 74  DAKSIIRMVNSSYCE---KNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSED 133
           DA  ++R     + E   +  L G A       NLS Q  W  PP    K N+DA+W  +
Sbjct: 99  DAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQ--WKAPPYQWVKCNTDATWQLE 158

Query: 134 QQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIE 193
             R G+GWI  + +G +L  G + + R   +   ELEA+      +L+     + RII E
Sbjct: 159 NPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWA---VLTMSRFNYKRIIFE 218

Query: 194 ADSSEVISILNHRSDDISEAWIVA-KKVADLAALVGDVTFSFSPRESNVEAHSLACFAVA 253
           +D+  ++++LN  SDD       A + +  L     +V F F+PR  N  A  +A  +++
Sbjct: 219 SDAQALVNLLN--SDDFWPTLQPALEDIQQLLHHFEEVKFEFTPRGGNKVADRIARESIS 278

Query: 254 LNLLDSSNF 259
            +  D   F
Sbjct: 279 FSNYDPKLF 280

[Close]

BLAST of Spg001293 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-05
Identity = 39/154 (25.32%), Postives = 63/154 (40.91%), Query Frame = 0


Query: 106 SSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLE 165
           S    WSPP     K N DAS  E     GLGWI  +S G+++  G  +   +   +  E
Sbjct: 100 SRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAE 159

Query: 166 LEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSD--------DISEAWIVAKKV 225
              +   ++       +   ++I E D+  +  ++N +S         D  ++WI + + 
Sbjct: 160 CSTLIWAIQASYGFGHK---KVIFEGDNQTITRMINTKSSNPRLQHFLDTIQSWIPSFE- 219

Query: 226 ADLAALVGDVTFSFSPRESNVEAHSLACFAVALN 252
                    + FSF  RE N  A  LA  A+  N
Sbjct: 220 --------SIEFSFKHREQNGCADFLAKQAIKEN 241

[Close]

BLAST of Spg001293 vs. TAIR 10
Match: AT1G27870.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 1.2e-04
Identity = 27/92 (29.35%), Postives = 44/92 (47.83%), Query Frame = 0


Query: 111 WSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKC-LELEAM 170
           W  P  G  K N D S+     +   GW+  DS GS L AG + I RK       E++A+
Sbjct: 52  WRRPERGWIKCNFDGSFVNGDVKSKAGWVVRDSNGSYLLAG-QAIGRKVDNALESEIQAL 111

Query: 171 AVGLKNLLSHLERPFPRIIIEADSSEVISILN 202
            + +++  SH    + R+  E D+  +  ++N
Sbjct: 112 IISMQHCWSH---GYKRVCFEGDNKMLFDLIN 139

The following BLAST results are available for this feature:

BLAST of Spg001293 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	1.6e-16	36.36	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
CAB4274760.1	1.7e-13	33.33	unnamed protein product [Prunus armeniaca]	[more]
CAB4274761.1	1.7e-13	33.33	unnamed protein product [Prunus armeniaca]	[more]
CAB4303756.1	4.1e-12	35.10	unnamed protein product [Prunus armeniaca]	[more]
XP_024046691.1	5.4e-12	32.43	uncharacterized protein LOC112101027 [Citrus clementina]	[more]

BLAST of Spg001293 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg001293 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	7.9e-17	36.36	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J5UE59	8.1e-14	33.33	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J5UF50	8.1e-14	33.33	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23354 PE=4 S...	[more]
A0A6J5WPU6	2.0e-12	35.10	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J5VSP2	5.8e-12	34.44	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51717 PE=4 S...	[more]

BLAST of Spg001293 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	2.0e-12	33.79	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	1.3e-11	29.10	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G65005.1	1.4e-05	25.32	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27870.1	1.2e-04	29.35	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 122..245 e-value: 6.2E-16 score: 58.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 117..248 e-value: 1.8E-11 score: 46.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..62
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 108..246
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 108..246
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 121..244 e-value: 1.73333E-18 score: 77.7396
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 118..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001293.1	Spg001293.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity