Spg001160 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001160
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 1
Location	scaffold8: 43585004 .. 43590056 (+)
RNA-Seq Expression	Spg001160
Synteny	Spg001160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAGAATATTTCGCCGGCCAAACATGAATTCTCCGTCAGGGCCATCACGGCCGCATCTCCTCTTAGCGCGGAATCGCGGGAAGTCCCAACCGGAGACGGAGAGATTGAGCGCCGACGTTGGAGGCTTGGAAGCTTCATTACTTCAGATGGTCAACGATCACCAGTACGCTTCTCTCAAGCTCCGAGAGAACTCCGGTTAGTTGCTATTTCCTGTTTGCTGTAATTCCTTCACTCTCTCTTAGGCCTTTGTAACCTTTACCTGCTGATTATATTGAATTTCGTCAAAATAAATAGTAATCGTCGTTCTGAATCATCGCGACAGAGAAGGCGAAGAAGGATGCCATTCAGAAGGCGGTGCGCGTTTCGAATCTTTTAGTGGATGCCGTCAATGGTGGAGTTCAGGAATCGTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTAGCGGCTACGATTACCCGGTTTACGAAGCAGACCGATCAGTGGCTAGCCGCCACTCACGCTCTGAACACCGCCGTTAAGGTTTGCTCTCATTTTTGTGAAAGAAACTCTTGAGTTGAAATTTCATAGAAACCTACATATTAGCTGTGAATACGTGTATATAATTTCTGCATTGCTGCGAATCGAACCCTGCTTGATCTTATTGCTGACGGAAGAGTTTAGCATTGTTATTGAAATCCACAAATTCAGTCCTCCAGAAGTTTTATAACTTTTAGATTCGATTAAATTATCTAGAGATGGTATTCAAGCTCGAAGGATTACGTTATGGCTGTTAATAATGCTTTTGATACTACCTGGTAACCACATTTGAGTCTTAAAGATTTTCCTCTAATAGTGGTCTAATTGTTGCATCATGGCCATCTTTGTCCTATGAAGAGCTTGTGGGCTATTAGACATTGAGTCTGTATGTTGTTAGTGTCTTGTTAGAGCTGTTTTGTATTCTTATTTTTGGTTAAAACGTTTTCTGTGAGATTCATAACAGTGGTTAGTATTGAAACTTAGTAGGTGAGCAGTATTTATAGAACCTGCCCCGGGTAATCTTTGTATGAAGAAAAATATGTATAAAAGTGCAGTTCGTGAAACTTAGTTAGGGCTATTTTGCAGCTGTTTTTGGTTAGTCTGCTTAGGCAACTTAAGCTATTCTTCATTTTAAAACTATGAGCTTGTTAACCTTGCAAGCCATTCGGCACAACTTTTGGTTTTGAATACGGAAGCAAAAGGCTATTTTCCAAAATGGCTCCCTAACTATTCTTTAAGTTTCGAAGATTTTGTTTTCTGGTTTGATGGTTTGTTTCTAATGACTTAAACATCATATTGAATCTTGATAGAAGGAAGAGGCTAATCAACTTGAGAAAATACTTTTCAAACTCAGTACAAGTTATGAACAGATTAAGTATACAAGAGAAGAAGACTGCATAAATTGCAAATAAAACTAATTTCAACTTCTATCTTCGTGATCACTGAATAAACATTTCTCATTAGTAATCAAGCCTTGACATTGTCTTATCCTTTGAGGGTAAAGTGAAAATGTAAGATGCGCTGTGAGAGAGAAATCATCTTTTATTTGTTCTTTAAATAGAAAAAGTCTCTTATAGTTTTGTTGGATACATATTAAGAATCTCAACCTAATAACCGAATTGTAGACAATTTTTGTTGAGCACATTGTTTTCTTGACTTTAGCCTTTGTATTGACAAAACAGGAGTAGCTTCTTTGTACTTTGGGTTACATGAACCTAAGACCGTTTGATTAATCTTAATGATTGAATCACTCAAATTGTTTCTTAGCTAAAGACTTGAAGTAGATGGAACCGGGTGAAATGGATGGCATGAATGTTATACTCTTGAATGTCAAGCTAGGAAATGCTGCCTGAATTTGTTTTATACCTTTCCTGGTTTCATAATTTTTTCCCCTTTCGTGGTTTCATCATATCTTCATTTGGTTTTCTTTCAGTTCTTTTTCATTCTGTTATGTTATTCTACTAATTTGATGTGTACATTTTATAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATTTCAATTGTAAAAGCATCACTACGGCCATCCATAACATTTACCAAGACTGAAATGCTTGTAGTTAAAGAGTCAACCATCCTTGCTTTCACATAGCTTATTTTGTAGAGTCGATCTTCATCCTCTCCTCTGCTTTAAATTCGCTGAATCTATGCCCTCATACATGGCTCAACGAGTTCTTGTGGTTTAAGGATATAAAGGGTGCAGCATATCCAGATGGAAACGTTTACAGAAACTTTGAATACCTCAGTCAACCGACATGTCTGCTTCCTTGCTAACTGTATAAAATAATTTGTCAACTCTGCTTTTAAGTTCACAGATTTATTTCTCGTTAACACGGTGCATGTTATCATTCTGTCAATTTATTGCTCATGTAAACTGCAGTCTTCTCTGTACAATTTTTAGCTACTGCCATGCAACAATCATTTCTGCATTCTTTCAATTATTGGTCTCCTTATTCTACTCTCTCCATCAATATTCAGCTTCATGATTATCAGATATGTTATCGAATTAGGTGGGTTTACAATGATTTTATTTCAGTTGGATGGAATATATACAAGGTAATATTGAATTTCCACCCCCTCCTTCTAAAGATGAGCTACAGGCCTTTCTAACAATGACACAACTTGCTCTTACCTTGACACAGTTTTATTTATTTATTGTACAGATGACCGAATCTTTTTTGGCAAATTCGACCATTCTCTCATCTCCTAGTGGTTTGGAGGAGTCTTATTTTGTTACGGGTGCACGTGAGCTGGTTCAGACACTTACAAATTTAAAAATAATAACAATAAAGAGGCCCAGGATTGAACTGAACCTGCTAATGATTCTGATGAGAAGGCCTTCTGCATAAACTCTTGATTGGTCTTCGGACGTCAACAGTGCAGCTTTGGAGTTGGAAAATACTCATTCTGAGGTACACCTTATCCTTCCTTGCTATTAAATTATGATGCTTCTTATTCTTATCTTATTGTTCATAAATGTAATTAACAAAGTTTAAAGCTAAGTAATACACTCAAACTCAACCTAACTTTGTTTTTAGACCAATTATTCAGAAGCTTTCTTTTCTTGGGTCTTTTAAAATATGAAAAGCAGCTTGAAAATATATCTTATATATTATTTTTGTTCTGTACAGAAACCGCTTTGAGAAAATGTTTGCTCAACGTGTTTTTTGAGTTAGAAATTAGAATATAGTTTTTGTTTTAAAAAATAGAAACATTATTTTTTTAGTAATAACTTCCAAACGCTTCTTGGTTTTCTTCAGAATGTTTCGAATAAAAGATTATAGTGGCTATTACTTATTCGTAGAAGACAATGCCAATATAATTATGCTAATCATTTCGGGAGTGTTGTAATTACTACTATTTTTTTATATATATATATACAACACTTGTTTTTTTTTCAAATATTAAACAAAATTTTTTTGTTTCCAAGTGTCCAACTCGCCAATTTTTAACAACTACCAACTATTTATATTTAATCTCACGAAATATTTTATTCAGAAATTGCATGCATAGTCAAATAGATATTCTTGCTTTGTTCAGAACATCTCACCCCAATACATCACGCCCTCTTACTTTATAGTTTAAAAAATTCCTTGACATCAATTTTTTTTTTTTTTTTAAAAAAAGGACCCCAAAACTCCAGTTAAAAGGTTAGAAGCAATGATTGGATGAATATATAAGGGGGAAAAAGAAAACTCAGTTATATTAGAAAGGGTAAGTTTTCTAGTTTCACTTAGTGATTCACTGATTCTGACAGTTGGATCATAATAGCAAATGATATATAGTACCACTTTATTCTTTCTGTAAGAAAATTTTGATATAACACTCATCTATTAGTGTATAATATCAATAATTCTATCTGACCCTAGACCCTAGCAGTGAATAAGAGTTAATGTAAAAATAATATGCCCTATAAAGGACATAGAAGAAATAAGTTTAAGTTATAGTAGTCATTTGTTTAGGATTTAACATTCTACAGATCTCCTTAAAGCTCAAGCAGTTGTTCTATGAGGACAATCGAGGTGTGGGAAGAATGGTTTGAACACAAAAAGGATATTATTTTTAAAACAAAAAGCGTGGAGAAGGAAAGTTTGGTGGAGGAATGGGACAACTGTAGTAGGTAAAGCAAAGACAAAGCTTTAAAACAAGTTTGTCAAGGACCAAACTAATCTCCCCTCTCGTAAGGAACAGTTGACTTAGCTGCTGGGAAGGAAGAAGTATTTCCTAAGATAACCAACTGGCAACTATTTAATATAAACTTGGTCAAAACCAACCTTGAGTTTTGTGTCTCTTTGTAAGGCGTTGACCCTCTCTTTAAACAACATTTTATTCCTCCTCCTCCTTCCTTCCTTTGGGGCCAAGTCTTTAGTTCTAAATTCTAACTATTCTTGAGGAGAATTTAGTTTTTTTTTTTTTAAAGGCACATTTGGTTACGAAGGCTTCAAGTGGCAGAATTCAGGGGCGGTAGACTGTTTCTATGTGCAAATTACTCTAAAGGTCGGCATTGGCAACTGGCAAAATTATACAGTGTGATGTAGGAAAAATGATTGTGATGGCTTCGACTGGCGTACTTCTGAAAATCTGCTTGCTCTCTAATAACTATTGGATACAAATTTGGAATATTTATGTAGTTTCTCTCTCATATATTTAACGGTGCAAAATTGTCAGTCATGTTGTGGCAGACGGCGGTCTCCTCCAATAATTTCTTGTGATATAGAAGATGCAAGCGTAAAGGATGAAAATAGTTTAGAGATTCCTATGAGCGATGAAGATTTCCTAGTTTGGTTTATAGATGCATAGGGTTTGTTTTCTATTAATTTGATTCTAAAACATCTAAAATAGTTGGATACTTTTTCCCCTTCTTTCTATTAATTACCCATGAAAGGTCCAACATTGAAAAAATGAAGGGTGTAAAATGAGAATTTATTTGTAAGCTATTCCAAAGTTATTTAGTGAACTGTTTATTTTGTTTATTTATTTATTTTTATTATATACAACGAAG

mRNA sequence

ATGAATTCTCCGTCAGGGCCATCACGGCCGCATCTCCTCTTAGCGCGGAATCGCGGGAAGTCCCAACCGGAGACGGAGAGATTGAGCGCCGACGTTGGAGGCTTGGAAGCTTCATTACTTCAGATGGTCAACGATCACCAGTACGCTTCTCTCAAGCTCCGAGAGAACTCCGAGAAGGCGAAGAAGGATGCCATTCAGAAGGCGGTGCGCGTTTCGAATCTTTTAGTGGATGCCGTCAATGGTGGAGTTCAGGAATCGTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTAGCGGCTACGATTACCCGGTTTACGAAGCAGACCGATCAGTGGCTAGCCGCCACTCACGCTCTGAACACCGCCGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATTTCAATTGTAAAAGCATCACTACGGCCATCCATAACATTTACCAAGACTGA

Coding sequence (CDS)

ATGAATTCTCCGTCAGGGCCATCACGGCCGCATCTCCTCTTAGCGCGGAATCGCGGGAAGTCCCAACCGGAGACGGAGAGATTGAGCGCCGACGTTGGAGGCTTGGAAGCTTCATTACTTCAGATGGTCAACGATCACCAGTACGCTTCTCTCAAGCTCCGAGAGAACTCCGAGAAGGCGAAGAAGGATGCCATTCAGAAGGCGGTGCGCGTTTCGAATCTTTTAGTGGATGCCGTCAATGGTGGAGTTCAGGAATCGTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTAGCGGCTACGATTACCCGGTTTACGAAGCAGACCGATCAGTGGCTAGCCGCCACTCACGCTCTGAACACCGCCGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATTTCAATTGTAAAAGCATCACTACGGCCATCCATAACATTTACCAAGACTGA

Protein sequence

MNSPSGPSRPHLLLARNRGKSQPETERLSADVGGLEASLLQMVNDHQYASLKLRENSEKAKKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIRALAATITRFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQD

Homology

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BLAST of Spg001160 vs. NCBI nr
Match: XP_022948128.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita moschata] >KAG7023932.1 Biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272.7 bits (696), Expect = 1.9e-69
Identity = 141/155 (90.97%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MNSPSGPSRPHLLLARNRGKSQPETERLSADVGGLEASLLQMVNDHQYASLKLRENSEKA 60
           MNSPSG SR HL   RNRGK Q E ERLSADVGGLEASL QMVNDHQYASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIRALAATITRFTKQTDQWLAATHA 120
           KKDAIQKAVRVS+LLVDAVNGGVQESFVNQKLIELEIRAL+ TITRF KQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDF+CKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Spg001160 vs. NCBI nr
Match: XP_023534753.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.4 bits (690), Expect = 9.7e-69
Identity = 140/155 (90.32%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MNSPSGPSRPHLLLARNRGKSQPETERLSADVGGLEASLLQMVNDHQYASLKLRENSEKA 60
           MNSPSG SR HL   RNRGK Q E ERLSADVGGLE SL QMVNDHQYASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEDSLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIRALAATITRFTKQTDQWLAATHA 120
           KKDAIQKAVRVS+LLVDAVNGGVQESFVNQKLIELEIRAL+ TITRF KQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDF+CKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Spg001160 vs. NCBI nr
Match: XP_023007259.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita maxima])

HSP 1 Score: 268.1 bits (684), Expect = 4.8e-68
Identity = 139/155 (89.68%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MNSPSGPSRPHLLLARNRGKSQPETERLSADVGGLEASLLQMVNDHQYASLKLRENSEKA 60
           MNSPSG SR H   ARNRGK Q E ERLSADVGGLEASL QMVNDHQYASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHHPAARNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIRALAATITRFTKQTDQWLAATHA 120
           KKDAIQKA+RVS+LLVDAVNGGVQ SFVNQKLIELEIRAL+ TITRF KQTDQWLAATHA
Sbjct: 61  KKDAIQKALRVSDLLVDAVNGGVQGSFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDF+CKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Spg001160 vs. NCBI nr
Match: XP_038900751.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Benincasa hispida])

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-67
Identity = 138/155 (89.03%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MNSPSGPSRPHLLLARNRGKSQPETERLSADVGGLEASLLQMVNDHQYASLKLRENSEKA 60
           MNS SGPSRP L +A NRGK Q ETE L+A+VGGLEASLLQMVNDH YASLKLRENSEKA
Sbjct: 1   MNSSSGPSRPDLPVAPNRGKFQSETEGLTAEVGGLEASLLQMVNDHHYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIRALAATITRFTKQTDQWLAATHA 120
           KKDAIQKAVRVS+LL DAVNGGVQ+SFVNQKLIELEIRALA TI RFTKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLFDAVNGGVQDSFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDF+CKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Spg001160 vs. NCBI nr
Match: XP_022149781.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Momordica charantia])

HSP 1 Score: 263.1 bits (671), Expect = 1.5e-66
Identity = 133/155 (85.81%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MNSPSGPSRPHLLLARNRGKSQPETERLSADVGGLEASLLQMVNDHQYASLKLRENSEKA 60
           M+SPSGPSRPHL +ARNRG  Q ETERLS++ GGLEASLLQMV+DHQ+ASLKLR++SEKA
Sbjct: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60

Query: 61  KKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIRALAATITRFTKQTDQWLAATHA 120
           KKDAIQKAVRVS+LLV AVNGGVQESFVNQKLIELEIRALAATI+RF KQTDQWL  THA
Sbjct: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQD 156
           LNTA+KEIGDFENWIKTIDF+CKSIT AIHNIYQD
Sbjct: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 155

[Close]

BLAST of Spg001160 vs. ExPASy Swiss-Prot
Match: O22929 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis thaliana OX=3702 GN=BLOS1 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.7e-40
Identity = 85/157 (54.14%), Postives = 119/157 (75.80%), Query Frame = 0


Query: 1   MNSPSGPSRPHLLLARNRGKSQP--ETERLSADVGGLEASLLQMVNDHQYASLKLRENSE 60
           MN+P       + L+  RG+  P  E E+   +   LE+SLLQ+++D++ +SL+LRE +E
Sbjct: 1   MNTP-------MSLSAARGRMLPFLEKEKSEEESETLESSLLQLIDDNRRSSLQLREKTE 60

Query: 61  KAKKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIRALAATITRFTKQTDQWLAAT 120
           +++K+AI+ A R ++LLV AVNGGV+E FVN+K IE EIR LA T+ +F KQTDQWLA T
Sbjct: 61  RSRKEAIRHAARTADLLVKAVNGGVEECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVT 120

Query: 121 HALNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQD 156
           HA+N+AVKEIGDFENW+KT++F+CK IT AI NI++D
Sbjct: 121 HAVNSAVKEIGDFENWMKTMEFDCKKITAAIRNIHED 150

[Close]

BLAST of Spg001160 vs. ExPASy Swiss-Prot
Match: Q54VX7 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Dictyostelium discoideum OX=44689 GN=bloc1s1 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 39  LLQMVNDHQYASLKLRENSEKAKKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIR 98
           L ++V DHQ    KL+E +E  KK+AI     V+N L+D+VN GV   F NQK +E E R
Sbjct: 2   LSKLVKDHQTHQNKLKEENEVLKKEAIASMGVVTNGLIDSVNTGVACIFANQKKLETEAR 61

Query: 99  ALAATITRFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFNCKSITTAIHNIY 154
            L A   +F+KQT+QW+      N ++KEIGD ENW K I+ +  +I+  I  +Y
Sbjct: 62  LLQANTAKFSKQTNQWIHLIENFNNSLKEIGDVENWSKKIESDMHNISDIIEFLY 116

[Close]

BLAST of Spg001160 vs. ExPASy Swiss-Prot
Match: Q0VFD8 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropicalis OX=8364 GN=bloc1s1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-18
Identity = 43/116 (37.07%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 39  LLQMVNDHQYASLKLRENSEKAKKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIR 98
           L +++ +HQ    + +E  EK +KDAI  A  ++  LVD +N GV +++VNQ+ ++ E++
Sbjct: 2   LSRLLKEHQGKQTERKEAQEKRRKDAIAAATTLTEALVDHLNVGVAQAYVNQRKLDHEVK 61

Query: 99  ALAATITRFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQ 155
            L     +F KQT QW++     N A+KEIGD ENW ++I+ + + I TA+  +Y+
Sbjct: 62  TLQTQAAQFAKQTTQWISLVENFNQALKEIGDVENWARSIEKDMRIIATALEYVYK 117

[Close]

BLAST of Spg001160 vs. ExPASy Swiss-Prot
Match: Q2NKW0 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus OX=9913 GN=BLOC1S1 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-17
Identity = 40/116 (34.48%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 39  LLQMVNDHQYASLKLRENSEKAKKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIR 98
           L +++ +HQ    + +E  EK +++AI  A  ++  LVD +N GV ++++NQ+ ++ E++
Sbjct: 2   LSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVK 61

Query: 99  ALAATITRFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQ 155
            L     +F KQT QW+      N A+KEIGD ENW ++I+ + ++I TA+  +Y+
Sbjct: 62  TLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 117

[Close]

BLAST of Spg001160 vs. ExPASy Swiss-Prot
Match: P78537 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens OX=9606 GN=BLOC1S1 PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-17
Identity = 40/116 (34.48%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 39  LLQMVNDHQYASLKLRENSEKAKKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIR 98
           L +++ +HQ    + +E  EK +++AI  A  ++  LVD +N GV ++++NQ+ ++ E++
Sbjct: 30  LSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVK 89

Query: 99  ALAATITRFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQ 155
            L     +F KQT QW+      N A+KEIGD ENW ++I+ + ++I TA+  +Y+
Sbjct: 90  TLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 145

[Close]

BLAST of Spg001160 vs. ExPASy TrEMBL
Match: A0A6J1G8I4 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111451801 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.4e-70
Identity = 141/155 (90.97%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MNSPSGPSRPHLLLARNRGKSQPETERLSADVGGLEASLLQMVNDHQYASLKLRENSEKA 60
           MNSPSG SR HL   RNRGK Q E ERLSADVGGLEASL QMVNDHQYASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIRALAATITRFTKQTDQWLAATHA 120
           KKDAIQKAVRVS+LLVDAVNGGVQESFVNQKLIELEIRAL+ TITRF KQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDF+CKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Spg001160 vs. ExPASy TrEMBL
Match: A0A6J1L4G4 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111499798 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.3e-68
Identity = 139/155 (89.68%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MNSPSGPSRPHLLLARNRGKSQPETERLSADVGGLEASLLQMVNDHQYASLKLRENSEKA 60
           MNSPSG SR H   ARNRGK Q E ERLSADVGGLEASL QMVNDHQYASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHHPAARNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIRALAATITRFTKQTDQWLAATHA 120
           KKDAIQKA+RVS+LLVDAVNGGVQ SFVNQKLIELEIRAL+ TITRF KQTDQWLAATHA
Sbjct: 61  KKDAIQKALRVSDLLVDAVNGGVQGSFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDF+CKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Spg001160 vs. ExPASy TrEMBL
Match: A0A6J1D9F5 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Momordica charantia OX=3673 GN=LOC111018127 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.5e-67
Identity = 133/155 (85.81%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MNSPSGPSRPHLLLARNRGKSQPETERLSADVGGLEASLLQMVNDHQYASLKLRENSEKA 60
           M+SPSGPSRPHL +ARNRG  Q ETERLS++ GGLEASLLQMV+DHQ+ASLKLR++SEKA
Sbjct: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60

Query: 61  KKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIRALAATITRFTKQTDQWLAATHA 120
           KKDAIQKAVRVS+LLV AVNGGVQESFVNQKLIELEIRALAATI+RF KQTDQWL  THA
Sbjct: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQD 156
           LNTA+KEIGDFENWIKTIDF+CKSIT AIHNIYQD
Sbjct: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 155

[Close]

BLAST of Spg001160 vs. ExPASy TrEMBL
Match: A0A1S3CKJ9 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucumis melo OX=3656 GN=LOC103501869 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.2e-66
Identity = 136/155 (87.74%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MNSPSGPSRPHLLLARNRGKSQPETERLSADVGGLEASLLQMVNDHQYASLKLRENSEKA 60
           M S  G SRP L +  NRGK Q +TERLSADVGGLE SLLQMV+DHQYASLKLRENSEKA
Sbjct: 1   MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIRALAATITRFTKQTDQWLAATHA 120
           KKDAIQKAVRVS+LLVD VNGGVQESFVNQKLIELEIRALA TI RFTKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDF+CKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Spg001160 vs. ExPASy TrEMBL
Match: A0A6A6L8U3 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Hevea brasiliensis OX=3981 GN=GH714_011008 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.8e-49
Identity = 103/145 (71.03%), Postives = 125/145 (86.21%), Query Frame = 0


Query: 10  PHLLLARNRGKSQPETERLSADVGGLEASLLQMVNDHQYASLKLRENSEKAKKDAIQKAV 69
           P L LAR R  S  ETE+   + GGLEASLLQ+++DH + SL+LRE +EKAKKDAI+KAV
Sbjct: 4   PQLPLARTRVASPWETEKPQPEPGGLEASLLQLMHDHHHKSLRLRELTEKAKKDAIKKAV 63

Query: 70  RVSNLLVDAVNGGVQESFVNQKLIELEIRALAATITRFTKQTDQWLAATHALNTAVKEIG 129
           RVS+LL+DAVNGGVQESF+N+K IELEIRALAATI+RF +QTDQWL ATHA+NTA+KEIG
Sbjct: 64  RVSDLLMDAVNGGVQESFINEKRIELEIRALAATISRFMRQTDQWLTATHAINTAIKEIG 123

Query: 130 DFENWIKTIDFNCKSITTAIHNIYQ 155
           DFENW+KT++F+CKSI  AI NI+Q
Sbjct: 124 DFENWMKTMEFDCKSINAAIRNIHQ 148

[Close]

BLAST of Spg001160 vs. TAIR 10
Match: AT2G30330.1 (GCN5L1 family protein )

HSP 1 Score: 165.2 bits (417), Expect = 4.1e-41
Identity = 85/157 (54.14%), Postives = 119/157 (75.80%), Query Frame = 0


Query: 1   MNSPSGPSRPHLLLARNRGKSQP--ETERLSADVGGLEASLLQMVNDHQYASLKLRENSE 60
           MN+P       + L+  RG+  P  E E+   +   LE+SLLQ+++D++ +SL+LRE +E
Sbjct: 1   MNTP-------MSLSAARGRMLPFLEKEKSEEESETLESSLLQLIDDNRRSSLQLREKTE 60

Query: 61  KAKKDAIQKAVRVSNLLVDAVNGGVQESFVNQKLIELEIRALAATITRFTKQTDQWLAAT 120
           +++K+AI+ A R ++LLV AVNGGV+E FVN+K IE EIR LA T+ +F KQTDQWLA T
Sbjct: 61  RSRKEAIRHAARTADLLVKAVNGGVEECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVT 120

Query: 121 HALNTAVKEIGDFENWIKTIDFNCKSITTAIHNIYQD 156
           HA+N+AVKEIGDFENW+KT++F+CK IT AI NI++D
Sbjct: 121 HAVNSAVKEIGDFENWMKTMEFDCKKITAAIRNIHED 150

The following BLAST results are available for this feature:

BLAST of Spg001160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948128.1	1.9e-69	90.97	biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita moschat...	[more]
XP_023534753.1	9.7e-69	90.32	biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita pepo su...	[more]
XP_023007259.1	4.8e-68	89.68	biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita maxima]	[more]
XP_038900751.1	1.1e-67	89.03	biogenesis of lysosome-related organelles complex 1 subunit 1 [Benincasa hispida...	[more]
XP_022149781.1	1.5e-66	85.81	biogenesis of lysosome-related organelles complex 1 subunit 1 [Momordica charant...	[more]

BLAST of Spg001160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22929	5.7e-40	54.14	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis tha...	[more]
Q54VX7	2.8e-18	43.48	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Dictyostelium d...	[more]
Q0VFD8	3.6e-18	37.07	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropica...	[more]
Q2NKW0	4.0e-17	34.48	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus OX=9...	[more]
P78537	4.0e-17	34.48	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens OX...	[more]

BLAST of Spg001160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8I4	9.4e-70	90.97	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita mosch...	[more]
A0A6J1L4G4	2.3e-68	89.68	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita maxim...	[more]
A0A6J1D9F5	7.5e-67	85.81	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Momordica chara...	[more]
A0A1S3CKJ9	2.2e-66	87.74	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucumis melo OX...	[more]
A0A6A6L8U3	1.8e-49	71.03	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Hevea brasilien...	[more]

BLAST of Spg001160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30330.1	4.1e-41	54.14	GCN5L1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009395	Biogenesis of lysosome-related organelles complex 1 subunit 1	PFAM	PF06320	GCN5L1	coord: 42..154 e-value: 4.2E-40 score: 136.5
IPR009395	Biogenesis of lysosome-related organelles complex 1 subunit 1	PANTHER	PTHR13073	BLOC-1 COMPLEX SUBUNIT 1	coord: 13..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001160.1	Spg001160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016197	endosomal transport
cellular_component	GO:0031083	BLOC-1 complex