Spg001143 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg001143
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold8: 38310372 .. 38311597 (+)
RNA-Seq ExpressionSpg001143
SyntenySpg001143
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTATTTAAATCGATAAATCGGTGGAGGAGGAAGATACCATATAAAAGTTCTGAGGCAATGGAGGAAGAGGCAGGCTTGGGTCTGGTTAGGAGGCAGAGTTCACAAGGGTTTCACATGGCTTTGTCTTCCAACTTGCAGTTTGGGCTCAGGGCTGAGAAAGTAACAGTGTCTCTGTTTGGTCCTAAACAAATGACCTACAGAATCAGCCATAACCCAAATGAGGACCAGAAGAAGATTGGAAAAGGACAGCTGGGTGGGTGAGAGCCTTAAATTTAGGGGCACAATTAGGTGGCTCTTGGGTTATAGGGAGGGTGGGGAGAGACCAAATATGTGAATGTTGTGCAAAGAAAGCAACTGGGAGTGGGTGCAAATTGAAAGCAAGCCAAAAGAGACAATTTTATGGGCTAACTTTGACATACAAAAGCAGCAGAATGCAGATTCTCTCTCATGTGGGTTGATTAGAAAATTACAATATAAAATGAATGCTAGATGATTTTGACTCTTTTTACTGTTGTTGAAACATGTAAACGGATATTTGTCACGAACTTGCACTGTTTAAAAGCTCTCAAGCGGCCAAGCCAGTGCCTGTTTTTCTACCCAAAGTAAAGCAGCAAAAGAAGCAGAAATACAATAATGCAGAAAGTTAGGACCACAGGAACTCACAGTGCTAGTTGATTTAGGAACTTGGAAAAATCTTCTTTCTACTCTGCATAGACTGAAAAGTGCTTTGGGGAATTAAGCAGTTGTAAAAGCCACATGATTTCTTGATCAATGGAAGATGAGCTAAGCAAGTAACCATGGCTGTCTGTCCAAATAGTGAATTTTGAGAATGATTATGATAAGAGAGAGATATTTAATACTAGGAAATGCAAGGGATGACTCCATATATTCATAAAAAGAAATTTTGAAATGCTGTTAAATGCATTAATTAGGTGGGACATGGTGTGATACATACTTGTCTGACGAGCCACATGGAATTGATAAATACTTACCAAGAGCTTTGTAGTAAATGAATCCCATTATGTATTTGTTAAAAACATACCAAGCCTGCAAGTTATAGGAGAACAACCTGCAGTGAATCAACTTAAAGTTATGAAAGGCTCCATTGTTGATTATAAATGGATGGCCTTGGAATGGTGTATAAGCTTTGAGACATCTCTAACAATTTGATCATAAAAAGATGTTCTAAACTTGGAACTAATTTAGAAAGCAAACTTTAA

mRNA sequence

ATGTCTGTATTTAAATCGATAAATCGGTGGAGGAGGAAGATACCATATAAAAGTTCTGAGGCAATGGAGGAAGAGGCAGGCTTGGGTCTGGTTAGGAGGCAGAGTTCACAAGGGTTTCACATGGCTTTGTCTTCCAACTTGCAGTTTGGGCTCAGGGCTGAGAAAGTAACAGTGTCTCTGTTTGGTCCTAAACAAATGACCTACAGAATCAGCCATAACCCAAATGAGGACCAGAAGAAGATTGGAAAAGGACAGCTGGACATCTCTAACAATTTGATCATAAAAAGATGTTCTAAACTTGGAACTAATTTAGAAAGCAAACTTTAA

Coding sequence (CDS)

ATGTCTGTATTTAAATCGATAAATCGGTGGAGGAGGAAGATACCATATAAAAGTTCTGAGGCAATGGAGGAAGAGGCAGGCTTGGGTCTGGTTAGGAGGCAGAGTTCACAAGGGTTTCACATGGCTTTGTCTTCCAACTTGCAGTTTGGGCTCAGGGCTGAGAAAGTAACAGTGTCTCTGTTTGGTCCTAAACAAATGACCTACAGAATCAGCCATAACCCAAATGAGGACCAGAAGAAGATTGGAAAAGGACAGCTGGACATCTCTAACAATTTGATCATAAAAAGATGTTCTAAACTTGGAACTAATTTAGAAAGCAAACTTTAA

Protein sequence

MSVFKSINRWRRKIPYKSSEAMEEEAGLGLVRRQSSQGFHMALSSNLQFGLRAEKVTVSLFGPKQMTYRISHNPNEDQKKIGKGQLDISNNLIIKRCSKLGTNLESKL
Homology
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BLAST of Spg001143 vs. NCBI nr
Match: KAG6571066.1 (hypothetical protein SDJN03_29981, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 8.4e-11
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 0 

Query: 22 MEEEAG-LGLVRRQSSQGFHMALSSNLQFGLRAEKVTVSLFGPKQMTYRISHNPNEDQKK 81
          MEEEAG +G+   QSSQGFHMALS NLQFGLRAE+ +VS FGP+Q     +    EDQ+K
Sbjct: 1  MEEEAGWVGVWLEQSSQGFHMALSFNLQFGLRAERGSVSHFGPEQCPTESAITQFEDQQK 60

Query: 82 IGKGQL 87
          IGKGQL
Sbjct: 61 IGKGQL 66

The following BLAST results are available for this feature:
BLAST of Spg001143 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571066.18.4e-1165.15hypothetical protein SDJN03_29981, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Spg001143 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg001143 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg001143 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg001143.1Spg001143.1mRNA