Spg001008 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001008
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Glycine-rich RNA-binding protein 3
Location	scaffold8: 40714533 .. 40716753 (+)
RNA-Seq Expression	Spg001008
Synteny	Spg001008

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTTTTCGAGGGAAATCAAATTTGCAAAACGTACATTCTAAAATCACATCAATTGATGAGCTTCGCAATAGCATGATTTTTAGCTCCCCCTCGTAGAACTCGATCGCAATAACCAATGATGAACAGCACGAACTCCTTGATGCTGGTTGCCAGAAGAGCACTCACCAATATCCAGAGCCCAACTCTGAGATTTCGATGCTTCTGTTCTCAATCCTCCTCCTCAGCTCCTTCGTCCTCTCCTTCTGAAACAAACAATAAGCTCTTTGTTGCAGGTTGGTTTCTCTTTCGCAATCCAATCACACAGATGCGGCACCCACATGATTTCAAATGATTTAGACATTGAATTTGATCTTGTTTGTTCATGTGGATTGTAGGGTTGTCGTGGTCGATGGATGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTACTGAAGGTAATCGTGAATGTTGAGCTTAAGCCTTTGATATATGAGATGTAGTCTACATGTTCGACGAAATGTCTAGTCGATTTTAGACTTCAGTTCATCACGTCTGCTTCTGGGTCGAAACTTTTTGCTGCATTGCCATTCATAACTGATTATTCTGAGCATTCTTTTAAGATTTTATTTCGTTGGAGTTTCCTGATTTATGAGTCTTGTAACGAGAGACATGGAGCCTGGTGAAAATCAGGAGGGCAAAAGAGTTTCAGATGAGTAGGATCAGGAGCATACTAATTTGTTGCATTTTACTGTGAATGTGTGATATTTTTGGAATTTTGAGACAGCAAAACAATGAGAAATTTCGAGAATGAAAGTTCTGCACGAGGAGGAATTGTGAAATTCAATGAATTTGAGAGGTGGGAAATTAAAATTTGAAAGGAATTTGATGTCCATTGGTGATCATTCTGAAACTGAACCAGCAAAATAGCTCGAATACAACTAATAGAGTTCACTTGATATTGAATGAACACTGGAATTTTAGTGGTGATGTCCATTGGTGATCACTCTGAAACTTCACCAGAGTTGGGATAAATTCAATGACCACTGTGAAACTCCAGTGATCATCACCAAAGGAACTTTGATATCCATTGCTGATCATTCTAAAACTTCAACAGCAAATAGCTTATGGAGTTCATCTCTTAAGTTCTGAATGCTTGTATGTTTTCTTGACAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGTAGAAGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCATTAGAAAAAAGTTGTATGAACTTATGATTGTTTTTCACTTTTAAGGTTATCATAAATTAGTCTAAATGAAAGTCATCACATCACTTGCAGGCGTTATTAGGGCGACCGTTGAGGATAAGTTTTGCCCTCGACAAGGTTCGCGGTGGACCTGTCGTCGTTCCTCGACTTTCAAACATCGACAACATTGTGGGCCGAAGGTCTTGAAGCTCTTGGTATTTCATCTTCTTGTAGCATCAACATGTAACCTTGAAATGTTCAGTTCCTACTTCTTAATCTGAATCTGGAGCTTTGGTTTTGCAGGTAGACAAGTAGGGAATCAATAGTATGAAGAACCTCAAGTTTGAATTGTTTAATAAAAGCCAGAGAAATGCAATATCAGAATTCTTGCTTGTACGCTCTTATATATGCCGAAATATTTGGAAGAAATGAGGGATCACAATGCTTTGTAACGCAACTCATGCTTTATCTTTTAATGGTAATGATAGATAATTCATATAGTTCATTAGATTGATTTATTTGTCAACTTGGAGTTTGTATTAAAGCACCTTTTTTTTTTTTTTTGAGTTAAGCACATTTTAGTTCTGATACAATTCTAGCGGCATTTTAATTATTTGGTCTTTCTTAATTGAAAAAACTAGTATAATTAGATTATGGCTGCATTTGACACTGATTTTGGAGGCTGTCAAAATGATTATAGGATAATTTTAACCATTTTTAGTGTTTGGTAAATTTGATTATAAATTAATTTATATAAAAGTACTTTTTGAATTATGTTGACCTGCAAAAGCCATTAATAGTAGCTTATCGATTTAGTTTCTCTAAATATCTAGTGTATTTTCTAACTAACTATTTACTCATCCACACCTCCACACTATTGAGACAGGGAATCCAATAATTTGTTGCTTCAATTATCTTATTTTAATAGGATTGAATTTGATTTTTT

mRNA sequence

ATGATGAACAGCACGAACTCCTTGATGCTGGTTGCCAGAAGAGCACTCACCAATATCCAGAGCCCAACTCTGAGATTTCGATGCTTCTGTTCTCAATCCTCCTCCTCAGCTCCTTCGTCCTCTCCTTCTGAAACAAACAATAAGCTCTTTGTTGCAGGGTTGTCGTGGTCGATGGATGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTACTGAAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGTAGAAGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGCGTTATTAGGGCGACCGTTGAGGATAAGTTTTGCCCTCGACAAGGTTCGCGGTGGACCTGTCGTCGTTCCTCGACTTTCAAACATCGACAACATTGTGGGCCGAAGGTCTTGAAGCTCTTGGTAGACAAGTAG

Coding sequence (CDS)

ATGATGAACAGCACGAACTCCTTGATGCTGGTTGCCAGAAGAGCACTCACCAATATCCAGAGCCCAACTCTGAGATTTCGATGCTTCTGTTCTCAATCCTCCTCCTCAGCTCCTTCGTCCTCTCCTTCTGAAACAAACAATAAGCTCTTTGTTGCAGGGTTGTCGTGGTCGATGGATGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTACTGAAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGTAGAAGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGCGTTATTAGGGCGACCGTTGAGGATAAGTTTTGCCCTCGACAAGGTTCGCGGTGGACCTGTCGTCGTTCCTCGACTTTCAAACATCGACAACATTGTGGGCCGAAGGTCTTGAAGCTCTTGGTAGACAAGTAG

Protein sequence

MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKASVIRATVEDKFCPRQGSRWTCRRSSTFKHRQHCGPKVLKLLVDK

Homology

[Close]

BLAST of Spg001008 vs. NCBI nr
Match: XP_022986397.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 186.4 bits (472), Expect = 1.8e-43
Identity = 97/115 (84.35%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWS 60
           MM++ N+LML+ARRALTNIQ+P L FRCFCSQSS   SSAPSSSPS  NNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA 113
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN +DAQ AKDAMDGKA
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA 115

[Close]

BLAST of Spg001008 vs. NCBI nr
Match: XP_022944150.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 186.4 bits (472), Expect = 1.8e-43
Identity = 97/115 (84.35%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWS 60
           MM++ N+LML+ARRALTNIQ+P L FRCFCSQSS   SSAPSSSPS  NNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA 113
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN +DAQ AKDAMDGKA
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA 115

[Close]

BLAST of Spg001008 vs. NCBI nr
Match: KAG6570903.1 (Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.1 bits (466), Expect = 9.2e-43
Identity = 96/115 (83.48%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQ---SSSSAPSSSPSETNNKLFVAGLSWS 60
           MM++ N+LM +ARRALTNIQ+P L FRCFCSQ   SSSSAPSSSPS  NNKLFVAGLSWS
Sbjct: 1   MMSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA 113
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN +DAQ AKDAMDGKA
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA 115

[Close]

BLAST of Spg001008 vs. NCBI nr
Match: KAG7010748.1 (Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.6 bits (462), Expect = 2.7e-42
Identity = 95/114 (83.33%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 2   MNSTNSLMLVARRALTNIQSPTLRFRCFCSQ---SSSSAPSSSPSETNNKLFVAGLSWSM 61
           M++ N+LM +ARRALTNIQ+P L FRCFCSQ   SSSSAPSSSPS  NNKLFVAGLSWS+
Sbjct: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60

Query: 62  DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA 113
           DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN +DAQ AKDAMDGKA
Sbjct: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA 114

[Close]

BLAST of Spg001008 vs. NCBI nr
Match: XP_023512965.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.2 bits (461), Expect = 3.5e-42
Identity = 95/115 (82.61%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQ---SSSSAPSSSPSETNNKLFVAGLSWS 60
           MM++TN+LM + RRALTNIQ+P L FRCFCSQ   SSSSAPSSSPS  NNKLFVAGLSWS
Sbjct: 1   MMSNTNTLMPLFRRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA 113
           +DERSLKDAFSS+GEVTEVRI+YDKDSGRSRGFGFVNFTN +DAQ AKDAMDGKA
Sbjct: 61  LDERSLKDAFSSYGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA 115

[Close]

BLAST of Spg001008 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-14
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 31  SQSSSSAPSS---SPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRS 90
           SQSS+   +S   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRS
Sbjct: 16  SQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75

Query: 91  RGFGFVNFTNVEDAQCAKDAMDGK 112
           RGFGFV+F+  + A  A   MDGK
Sbjct: 76  RGFGFVSFSCEDSANNAIKEMDGK 99

[Close]

BLAST of Spg001008 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 46  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAK 105
           + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +   A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 106 DAMDGK 112
             MDGK
Sbjct: 94  SEMDGK 99

[Close]

BLAST of Spg001008 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 38/81 (46.91%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 31  SQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGF 90
           S SS S   +    +++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGF
Sbjct: 24  SLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGF 83

Query: 91  GFVNFTNVEDAQCAKDAMDGK 112
           GFV FT+ E A  A  A+DG+
Sbjct: 84  GFVTFTSSEAASSAIQALDGR 104

[Close]

BLAST of Spg001008 vs. ExPASy Swiss-Prot
Match: W8E7I1 (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 43  SETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQ 102
           S    KLFV GL+++ DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ FTN E A 
Sbjct: 2   SSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 103 CAKDAMDGKA 113
            A  AM+G++
Sbjct: 62  NAMRAMNGES 71

[Close]

BLAST of Spg001008 vs. ExPASy Swiss-Prot
Match: P98179 (RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-13
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 43  SETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQ 102
           S    KLFV GL+++ DE++L+D FSSFG ++EV +V D+++ RSRGFGF+ FTN E A 
Sbjct: 2   SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 103 CAKDAMDGKA 113
            A  AM+G++
Sbjct: 62  VAMRAMNGES 71

[Close]

BLAST of Spg001008 vs. ExPASy TrEMBL
Match: A0A6J1J7F1 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484146 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 8.9e-44
Identity = 97/115 (84.35%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWS 60
           MM++ N+LML+ARRALTNIQ+P L FRCFCSQSS   SSAPSSSPS  NNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA 113
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN +DAQ AKDAMDGKA
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA 115

[Close]

BLAST of Spg001008 vs. ExPASy TrEMBL
Match: A0A6J1FYH8 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111448693 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 8.9e-44
Identity = 97/115 (84.35%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWS 60
           MM++ N+LML+ARRALTNIQ+P L FRCFCSQSS   SSAPSSSPS  NNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA 113
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN +DAQ AKDAMDGKA
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA 115

[Close]

BLAST of Spg001008 vs. ExPASy TrEMBL
Match: A0A6J1CG90 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111011148 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.2e-42
Identity = 96/112 (85.71%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDE 60
           MM++TN+ MLVARR LTNIQS TLR  CFCSQSS    SSSPS  NNKLFVAGLSWSMDE
Sbjct: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS----SSSPSALNNKLFVAGLSWSMDE 60

Query: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA 113
           RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN +DAQCAKDAMDGKA
Sbjct: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA 108

[Close]

BLAST of Spg001008 vs. ExPASy TrEMBL
Match: A0A5D3CH06 (Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00050 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 8.4e-42
Identity = 93/112 (83.04%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDE 60
           MM++TN+L+L+AR+ALTNIQ+P L FRCFCSQ S+SA SSSPS  +NKLFVAGLSWSMDE
Sbjct: 1   MMSNTNTLLLLARKALTNIQTPILTFRCFCSQ-STSALSSSPSAPSNKLFVAGLSWSMDE 60

Query: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA 113
           RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+F N  DAQCAKDAMDGKA
Sbjct: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKA 111

[Close]

BLAST of Spg001008 vs. ExPASy TrEMBL
Match: A0A1S3C2R4 (glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495992 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 8.4e-42
Identity = 93/112 (83.04%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDE 60
           MM++TN+L+L+AR+ALTNIQ+P L FRCFCSQ S+SA SSSPS  +NKLFVAGLSWSMDE
Sbjct: 18  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQ-STSALSSSPSAPSNKLFVAGLSWSMDE 77

Query: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA 113
           RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+F N  DAQCAKDAMDGKA
Sbjct: 78  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKA 128

[Close]

BLAST of Spg001008 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-23
Identity = 58/83 (69.88%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 29  FCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSR 88
           FC+ SSS++PSS       KLF+ GLSWS+DE+SLKDAFSSFGEV EVRI YDK SGRSR
Sbjct: 31  FCT-SSSASPSS-------KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSR 90

Query: 89  GFGFVNFTNVEDAQCAKDAMDGK 112
           GFGFV+F    DA  AKDAMDGK
Sbjct: 91  GFGFVDFAEEGDALSAKDAMDGK 105

[Close]

BLAST of Spg001008 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-15
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 31  SQSSSSAPSS---SPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRS 90
           SQSS+   +S   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRS
Sbjct: 16  SQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75

Query: 91  RGFGFVNFTNVEDAQCAKDAMDGK 112
           RGFGFV+F+  + A  A   MDGK
Sbjct: 76  RGFGFVSFSCEDSANNAIKEMDGK 99

[Close]

BLAST of Spg001008 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-15
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 31  SQSSSSAPSS---SPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRS 90
           SQSS+   +S   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRS
Sbjct: 16  SQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75

Query: 91  RGFGFVNFTNVEDAQCAKDAMDGK 112
           RGFGFV+F+  + A  A   MDGK
Sbjct: 76  RGFGFVSFSCEDSANNAIKEMDGK 99

[Close]

BLAST of Spg001008 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-15
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 46  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAK 105
           + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +   A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 106 DAMDGK 112
             MDGK
Sbjct: 94  SEMDGK 99

[Close]

BLAST of Spg001008 vs. TAIR 10
Match: AT4G13850.2 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-15
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 46  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAK 105
           + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +   A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 106 DAMDGK 112
             MDGK
Sbjct: 94  SEMDGK 99

The following BLAST results are available for this feature:

BLAST of Spg001008 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986397.1	1.8e-43	84.35	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]	[more]
XP_022944150.1	1.8e-43	84.35	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]	[more]
KAG6570903.1	9.2e-43	83.48	Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosper...	[more]
KAG7010748.1	2.7e-42	83.33	Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosper...	[more]
XP_023512965.1	3.5e-42	82.61	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]

BLAST of Spg001008 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIS2	2.4e-14	52.38	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	4.2e-14	51.52	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9FNR1	4.2e-14	46.91	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
W8E7I1	1.6e-13	52.86	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2	[more]
P98179	2.7e-13	51.43	RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1	[more]

BLAST of Spg001008 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7F1	8.9e-44	84.35	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1FYH8	8.9e-44	84.35	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1CG90	2.2e-42	85.71	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX...	[more]
A0A5D3CH06	8.4e-42	83.04	Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C2R4	8.4e-42	83.04	glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of Spg001008 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08000.1	1.0e-23	69.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	1.7e-15	52.38	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	1.7e-15	52.38	glycine-rich RNA-binding protein 4	[more]
AT4G13850.1	3.0e-15	51.52	glycine-rich RNA-binding protein 2	[more]
AT4G13850.2	3.0e-15	51.52	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 48..120 e-value: 1.3E-20 score: 84.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 49..111 e-value: 2.8E-20 score: 71.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 47..122 score: 17.949841
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 29..138 e-value: 3.2E-27 score: 97.4
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 7..116
None	No IPR available	PANTHER	PTHR15241:SF334	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL	coord: 7..116
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 32..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001008.1	Spg001008.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding