Spg000872 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg000872
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDitrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate specific)
Locationscaffold8: 34729837 .. 34731586 (+)
RNA-Seq ExpressionSpg000872
SyntenySpg000872
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCACAACTGGACTTCTTTCTTTGTTACCCCACCACATGCTATGCTAGGAGTAGAATACGACCCATCCGTTGTATGCTCATCCTGTGCTTTGGTTCCTTTCATTCCCCCAGTACTTCCCTCCTATAGAGTAATATTGTTTGTTATATTGAACAATTTTTATGATTGTATACATGATATACTTATCGAAGACAAAGTTTGATTTTTCCTTTAGTGGTCTAGTAAGCTTATTTGATGGTATGTGGAACCTTTACTTATGAAAGAAATCAATTTATGAATCTAAACCGACATAAAATTTGTGTATCCAATAAGTTTTCCTCCTACACCTTTTTCTGCTTATTCCTCTCTTTTCAAATTTTGCAAATCTTGCTTTAATGCTCTTTCTTCTACTGCATAGTTGTGTCCTTCGAATCACACTTTCCCCAAAAGTCTTCACTTTAAATAGCATTAGATTCTTGTTAACAAAAATTCCATTCATTTTTGTTAATAGTTTTTGGGGTTGAAGAGAATTATATCATTATATGAGCTTTGATTTATATTGAACTGCAGACACATGGGACCATTGAAGTCCTTGAAGTATGGTTCCCTGGTAAAAGCCATATACAAGTTTACCATGGTGCGGCAGAACTATGGTGAGTTACCTGCTATTGTCTTAATAAGTTCTAGTGAAGTTTGTATATCTTGTCTCCATAATGTAATGAACAATACTTGGTATCAGTGTATAGCTATCTTCCTACATACCACCATTTCGTTATAATGTTGACATGTTGACAACTGGGAGAGACTTTTTTTTTTTTTTTTTTTCTCATTTTCTACCTTTCTCTTAGTTATCAACATTTTAATGGTGGTGTAGGAAGATATAGATACCTAAATACTGGTATACAGCTAAGTATTGTTCTAATGTAATTGGTATTTATTATGATTCTAAATGGTGAAAATGGTCTTACAACTAAATTCTAATTTATTATCCTTTCACATCTTTCATATATTCCTCTACATGATTTTGAGGCTTCCCTTTGGAAAGTTGAGTCCTTCTGGTTCAAATTGGTTGTTAGCAATACCTTTTGGAATCTTTGAGGTGGTATTCTAAATCATGTGATAACTATTTGGTTTTTGATTGTTGACAATACCTTAGCTTTCATTTCTGAAATTTTAAAGATCAGTTTTGTCTCCTATAATCTCTTTGAAAGCCATCTGGCTAGCATAGCCACTGTATTCAACCAGGTTTCTTACACTTACCTTTTAGACATTTGCAAAGTTTTCCAAGCTCTTCTGGATTGCAATGGTGGCCAAAGTTTAATAAAAGAAGTCTTCTAATTTTTTGTTTTTGAGTTCAAGCAGTGGATTGGAGAAAATCTTTATTAATGCCTTAATCAGCTGTGTTATTGATATTAATTTTAAATTTGTAAGCAAACAATATATATATATTTTTTAATATTTTAAATAACAAAATGAAATCGTTATTATATAGACGTTAAATTTTCATTTGACTAGTTATATTTATCTGATGGGGTTTCAATAGGTAAATGAACTGAAGCATTGAGAGACTCTGCAGTGATGGAAGGCCAATGAATCAAGGGGAAGATTTAGAAGTTTTGAACAGCAATGGATTTAGTTTTATGAATATTCAATCCAAGGGAAACATTTCATGAGTCTTCCAATTGCTGTAATAAATTCATAAATAAAATGCCTCAATTATATAAAATATACCAAGCCTACACAATAAAGATTTTTTTTTTTTTTTTTT

mRNA sequence

ATGCCTCCACAACTGGACTTCTTTCTTTGTTACCCCACCACATGCTATGCTAGGAGTAGAATACGACCCATCCGTTGTATGCTCATCCTACACATGGGACCATTGAAGTCCTTGAAGTATGGTTCCCTGGTAAAAGCCATATACAAGTTTACCATGGTGCGGCAGAACTATGGTGAGTTACCTGCTATTGTCTTAATAAGTTCTAGTGAAGTTTGTATATCTTGTCTCCATAATGTAATGAACAATACTTGGTATCAGTGTATAGCTATCTTCCTACATACCACCATTTCGTTATAA

Coding sequence (CDS)

ATGCCTCCACAACTGGACTTCTTTCTTTGTTACCCCACCACATGCTATGCTAGGAGTAGAATACGACCCATCCGTTGTATGCTCATCCTACACATGGGACCATTGAAGTCCTTGAAGTATGGTTCCCTGGTAAAAGCCATATACAAGTTTACCATGGTGCGGCAGAACTATGGTGAGTTACCTGCTATTGTCTTAATAAGTTCTAGTGAAGTTTGTATATCTTGTCTCCATAATGTAATGAACAATACTTGGTATCAGTGTATAGCTATCTTCCTACATACCACCATTTCGTTATAA

Protein sequence

MPPQLDFFLCYPTTCYARSRIRPIRCMLILHMGPLKSLKYGSLVKAIYKFTMVRQNYGELPAIVLISSSEVCISCLHNVMNNTWYQCIAIFLHTTISL
Homology
[Close]
BLAST of Spg000872 vs. NCBI nr
Match: XP_023007519.1 (dehydrodolichyl diphosphate synthase complex subunit nus1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 84.3 bits (207), Expect = 6.2e-13
Identity = 47/70 (67.14%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 3   PQLDFFLCY-PTTCYARSRIRPIRCMLILHMGPLKSLKYGSLVKAIYKFTMVRQNYGELP 62
           P  D  L Y P+ C+       IR   ILHMGPLKS KYGSLVKAIYKFTMVRQNYGEL 
Sbjct: 188 PDPDLILVYGPSRCHLGFPAWRIRYTEILHMGPLKSKKYGSLVKAIYKFTMVRQNYGELL 247

Query: 63  AIVLISSSEV 72
           AI LISSSE+
Sbjct: 248 AIALISSSEI 257

[Close]
BLAST of Spg000872 vs. NCBI nr
Match: XP_023007518.1 (dehydrodolichyl diphosphate synthase complex subunit nus1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 84.3 bits (207), Expect = 6.2e-13
Identity = 47/70 (67.14%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 3   PQLDFFLCY-PTTCYARSRIRPIRCMLILHMGPLKSLKYGSLVKAIYKFTMVRQNYGELP 62
           P  D  L Y P+ C+       IR   ILHMGPLKS KYGSLVKAIYKFTMVRQNYGEL 
Sbjct: 189 PDPDLILVYGPSRCHLGFPAWRIRYTEILHMGPLKSKKYGSLVKAIYKFTMVRQNYGELL 248

Query: 63  AIVLISSSEV 72
           AI LISSSE+
Sbjct: 249 AIALISSSEI 258

[Close]
BLAST of Spg000872 vs. NCBI nr
Match: XP_023007520.1 (dehydrodolichyl diphosphate synthase complex subunit nus1-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 3.5e-08
Identity = 37/58 (63.79%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 3   PQLDFFLCY-PTTCYARSRIRPIRCMLILHMGPLKSLKYGSLVKAIYKFTMVRQNYGE 60
           P  D  L Y P+ C+       IR   ILHMGPLKS KYGSLVKAIYKFTMVRQNYG+
Sbjct: 189 PDPDLILVYGPSRCHLGFPAWRIRYTEILHMGPLKSKKYGSLVKAIYKFTMVRQNYGK 246

[Close]
BLAST of Spg000872 vs. NCBI nr
Match: XP_038900449.1 (dehydrodolichyl diphosphate synthase complex subunit nus1 [Benincasa hispida] >XP_038900450.1 dehydrodolichyl diphosphate synthase complex subunit nus1 [Benincasa hispida])

HSP 1 Score: 68.6 bits (166), Expect = 3.5e-08
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 3   PQLDFFLCY-PTTCYARSRIRPIRCMLILHMGPLKSLKYGSLVKAIYKFTMVRQNYGE 60
           P  D  L Y PT C+       IR   ILHMGPLKS+ YGSL+KAIYKFTMVRQNYG+
Sbjct: 188 PDPDLILVYGPTRCHLGFPAWRIRYTEILHMGPLKSMNYGSLLKAIYKFTMVRQNYGK 245

[Close]
BLAST of Spg000872 vs. NCBI nr
Match: XP_017971582.1 (PREDICTED: dehydrodolichyl diphosphate synthase complex subunit NUS1 [Theobroma cacao])

HSP 1 Score: 68.2 bits (165), Expect = 4.6e-08
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 3   PQLDFFLCY-PTTCYARSRIRPIRCMLILHMGPLKSLKYGSLVKAIYKFTMVRQNYGE 60
           P+ D  L Y P  C+       +R   I+HMGPLKS+KYGSL+KAIYKFTMVRQNYG+
Sbjct: 198 PEPDLLLVYGPARCHLGFPAWRMRYTEIIHMGPLKSMKYGSLIKAIYKFTMVRQNYGK 255

[Close]
BLAST of Spg000872 vs. ExPASy TrEMBL
Match: A0A6J1L7W1 (Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate specific) OS=Cucurbita maxima OX=3661 GN=LOC111499983 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 47/70 (67.14%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 3   PQLDFFLCY-PTTCYARSRIRPIRCMLILHMGPLKSLKYGSLVKAIYKFTMVRQNYGELP 62
           P  D  L Y P+ C+       IR   ILHMGPLKS KYGSLVKAIYKFTMVRQNYGEL 
Sbjct: 189 PDPDLILVYGPSRCHLGFPAWRIRYTEILHMGPLKSKKYGSLVKAIYKFTMVRQNYGELL 248

Query: 63  AIVLISSSEV 72
           AI LISSSE+
Sbjct: 249 AIALISSSEI 258

[Close]
BLAST of Spg000872 vs. ExPASy TrEMBL
Match: A0A6J1L559 (Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate specific) OS=Cucurbita maxima OX=3661 GN=LOC111499983 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 47/70 (67.14%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 3   PQLDFFLCY-PTTCYARSRIRPIRCMLILHMGPLKSLKYGSLVKAIYKFTMVRQNYGELP 62
           P  D  L Y P+ C+       IR   ILHMGPLKS KYGSLVKAIYKFTMVRQNYGEL 
Sbjct: 188 PDPDLILVYGPSRCHLGFPAWRIRYTEILHMGPLKSKKYGSLVKAIYKFTMVRQNYGELL 247

Query: 63  AIVLISSSEV 72
           AI LISSSE+
Sbjct: 248 AIALISSSEI 257

[Close]
BLAST of Spg000872 vs. ExPASy TrEMBL
Match: A0A6J1L369 (Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate specific) OS=Cucurbita maxima OX=3661 GN=LOC111499983 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 37/58 (63.79%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 3   PQLDFFLCY-PTTCYARSRIRPIRCMLILHMGPLKSLKYGSLVKAIYKFTMVRQNYGE 60
           P  D  L Y P+ C+       IR   ILHMGPLKS KYGSLVKAIYKFTMVRQNYG+
Sbjct: 189 PDPDLILVYGPSRCHLGFPAWRIRYTEILHMGPLKSKKYGSLVKAIYKFTMVRQNYGK 246

[Close]
BLAST of Spg000872 vs. ExPASy TrEMBL
Match: A0A061E2M1 (Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate specific) OS=Theobroma cacao OX=3641 GN=TCM_047000 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 3   PQLDFFLCY-PTTCYARSRIRPIRCMLILHMGPLKSLKYGSLVKAIYKFTMVRQNYGE 60
           P+ D  L Y P  C+       +R   I+HMGPLKS+KYGSL+KAIYKFTMVRQNYG+
Sbjct: 198 PEPDLLLVYGPARCHLGFPAWRMRYTEIIHMGPLKSMKYGSLIKAIYKFTMVRQNYGK 255

[Close]
BLAST of Spg000872 vs. ExPASy TrEMBL
Match: A0A218WSJ1 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr009491 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 3   PQLDFFLCY-PTTCYARSRIRPIRCMLILHMGPLKSLKYGSLVKAIYKFTMVRQNYGE-- 62
           P+ D  L Y P  C+       +R   I+HMGPLKSLKYGSL+KAIYKFT+VRQNYG+  
Sbjct: 181 PEPDLLLVYGPVRCHLGFPAWRLRYTEIVHMGPLKSLKYGSLLKAIYKFTLVRQNYGKKL 240

Query: 63  LPAIVL 66
           LP + L
Sbjct: 241 LPLVCL 246

[Close]
BLAST of Spg000872 vs. TAIR 10
Match: AT1G11755.1 (Undecaprenyl pyrophosphate synthetase family protein )

HSP 1 Score: 47.8 bits (112), Expect = 6.0e-06
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 24  IRCMLILHMGPLKSLKYGSLVKAIYKFTMVRQNYG 59
           +R   I+HMG LK ++YGSL+KAI+KFT V QNYG
Sbjct: 219 LRYTEIVHMGTLKYMRYGSLLKAIHKFTGVHQNYG 253

The following BLAST results are available for this feature:
BLAST of Spg000872 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023007519.16.2e-1367.14dehydrodolichyl diphosphate synthase complex subunit nus1-like isoform X2 [Cucur... [more]
XP_023007518.16.2e-1367.14dehydrodolichyl diphosphate synthase complex subunit nus1-like isoform X1 [Cucur... [more]
XP_023007520.13.5e-0863.79dehydrodolichyl diphosphate synthase complex subunit nus1-like isoform X3 [Cucur... [more]
XP_038900449.13.5e-0862.07dehydrodolichyl diphosphate synthase complex subunit nus1 [Benincasa hispida] >X... [more]
XP_017971582.14.6e-0858.62PREDICTED: dehydrodolichyl diphosphate synthase complex subunit NUS1 [Theobroma ... [more]
BLAST of Spg000872 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg000872 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1L7W13.0e-1367.14Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate spe... [more]
A0A6J1L5593.0e-1367.14Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate spe... [more]
A0A6J1L3691.7e-0863.79Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate spe... [more]
A0A061E2M12.2e-0858.62Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate spe... [more]
A0A218WSJ12.2e-0856.06Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr009491 PE=3 SV=1[more]
BLAST of Spg000872 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G11755.16.0e-0662.86Undecaprenyl pyrophosphate synthetase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg000872.1Spg000872.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019408 dolichol biosynthetic process
biological_process GO:0006486 protein glycosylation
biological_process GO:0050896 response to stimulus
cellular_component GO:1904423 dehydrodolichyl diphosphate synthase complex
cellular_component GO:0005789 endoplasmic reticulum membrane
molecular_function GO:0045547 dehydrodolichyl diphosphate synthase activity