Spg000857 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000857
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	zinc finger CCCH domain-containing protein 25
Location	scaffold8: 43982578 .. 43986805 (+)
RNA-Seq Expression	Spg000857
Synteny	Spg000857

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAACCCCCTTTGGGCAGCAAGTCCTAACCGGCCGGTTTAGGAAAGATCCTGCGCGCGCCATGCCCTAGTAGTAAGTTCGACTTCGATCCCCTTGCGGGAAGAAACGTCTCTTTGGTCAAGGGAGAAACCAGGAAGATAATAAGAGAGAATCTCGATTCCGATTTTGAAGTGATCTATGAATCCTCTAACCCTAGTCAAACGCATCCAGAAAATAAATTCTCAAGAGGCCTCGCTTGGGATTTCCGAGGAAGCTTCATGGCACGCCAAGTACAAAGATTCCGCCTACGTTTTCGTCGGAGGCATTCCTTACGACCTCACTGAGGGCGATCTCCTCGCCGTTTTCGCTCAGTAAGTTCACAATTCTTTCTATTTTCTCTCCATCGCCGTTCTGATCGTGTTCTCCTGTACCTTTCTGTTCTTATGTGCTCGATAGATTGTGTAGTTGACTAAGTGTAAGATCCGGATGCTATGCTAGATCAGTGTGTTCGACATTGAAATGATTTTTTCCTCTTAGATGTGGTCTTGTAGTTGTAGCTTATGATTTGTACTGGGCTGGAAGTGATGGAAATTTCAGGGGTTCTGTATAACTGGATGATGGTGTTTGTAGATCGTTTTTAGTCGACAGTCTTGGCTGGTTTGAATTGGTAAGAGAGGGAGTTGATGTTTCAAGTTGTGCAGCTCATGCTTAACCAAATGGATAATTGAGCTTGTGTTTGCTAGTCTAATTAGATTTTGTTCCCATCTCTCTTGTGAACCATACGAGTTGTTTGATTTAATTTATTTTTAGAATTCATCTTCATTATGACCTTGAGGAGGCAGCCTTCTGATAAGGGCTTGGGATGTTTGGAGATATCCTCTTGAGGTCCTACGTTTAAGTTTTAGATGCGATACCTAGCCCTGTTCGATAACTATTTGGTTTTTGAAAATTAAGCTTCCAAATACTACTTCACCTATGAGTTTCGTTGTTTTGTCATCTACTTTTTAAGCATGTTTTCAAAATCCAAGCCAAAATTTGAAAACTAAAAATAGTAGTTTCTAGAAACTCGATTGTGTTTTTGGAAGTTGTCTAAGAATTCTGATGTCTTTTTAAGAAGGTGAAAACCATAGTAATGGTAAGGAAACGAGCACAATTTTCGAAAAACTAATAACAAAATCTATCAAATAGGCCCTTAGTTAATCAGAACCTTTGTTTTCCTGGAGCTAGCCTTTTAATGGCGAAAGCCTCTCAAAGATCAGTGGGGTTGATCCTAAGCATAGTGCAATAAGTGAGGCTTTTCGATATCTATCAGAAGAAGAATTTTCTTTCTTCCTTAGCCGTTCACTGTGTAGCTGTCTGTTAATGGATGTTTAACGTTATAGATAGATTGACTTGTAGATCCTTTTGCTTTCTGGAATTTGAAATGTGCTTGGTCGTACAGATATGGAGAGATTGTAGATGTTAATCTTGTCAGAGACAAGGGTACAGGAAAATCAAAAGGCTTTGCCTTCGTTGCATATGAAGATCAGAGAAGTACAAACCTTGCTGTAGGTTGTCCCCTTCTCCTCACTCTGGATAGTTCATCGTCATCGATATATGGGATTGAATGCAGATCTCTAAGTAATATGTTTGTCACTTTCAGATAATTTGAACGGTGCACAGATTCTAGGTCGAATCATTAGGGTCGATCATGTTACTAAATATAAAAAGAAGGAAGAAGAAGATGAAGAGACAGAACAAAAAAAGAGGGAAGCTCGGGGTGTTTGCCGTGCATTTCAAAGGGGTGAATGTACCCGTGGAGCTGGATGCAAATTCTCTCACGATGAGCAGGTATGTTCAAGTTAATGGAAGAAAATTGGTCTCCTGCTGGTGTATAGAAATACATTTTCTTCTTCTTTGATATCCATAAGTATCCAAGTCGATTTGCACGCATCTTGACTATTTTTGCATTCTGACTTTATCTTGGGTTATTTTAGAAACTTGGTCAATTTATAGAGAATTTAGTTTCACATGATTTTATAGTTTCCTTTTATCTTTAGAGGCTATTTGGTTTAAGGTTTGATGGATACCCATGGGTAAGAGATGCCTAGGAATAATATGTTAGGGGCTGTTTGGTTTTAAGTTTCATGGATGTCCACGGCTAAGAGGTGTCTAGAAATGATATGTTTAGAATAAGATTGTTTGGAATTAAAGATTATCATATTTGGTTTTGCATGAAAATATAATTAGAATTTCATGGGATCAAATTATGTTTGTACTTATTTTATACAACCAAAATCATAGGAATCTTATCTAATTTAAATAGATTAATCAATAAACTAGCCAAAAAAAAAAAAAAAAACTAGCCAAAATTAATTCAGAGTATTAATAAAAACTAGTTAATTAATCATTAAAGAATAATTTTAATTGAATATTGAATTATAAGTATTGAAAAAGGAGTACTTATACTAAATTAATTAACTAAAAAATTTAACAAATATCCTTATTTACATTAATTTGACATATTTGTATCCATATAAATGAATTAAATAAATATTTTAATAAGTAAAAATATTATCATTTATAATAATGGAATATTTAAACAGTTTTAATTAGTTATAGGGCAGTATTATTAATTATAAATTTACTTTAGTGTCATCTAAATCAAATAAATTTTAGTTAAGCAATACACACAAAAAAAAAAATATTAGTCTTATGATCCTTTAGATTGGAAGGCTTTCTTGTAGCTCCTTGGGTGGGTTTTTTTTTTTCTTCCCCTGGCCCTATATTTCTTGTTTCTTTAAAAAAAGTAATGTACAAAAAATAGGGTAAAAGAAAACAGAGAATAAAAGTGGGGGAATGAAGAAACCCTACGCCTTTGAGGGGGAATAGAAAAAACGCTATGGGATTAAAAGATGCGTAAGAATAACTAATTCCCATTCCAATCCCAAAACACTTACTCCAAACAAAGGAATAACAACTCCTTATATCCATTTCTACCTCCCAAAATCTTGTATCAGACAACCCCTTAATGTTACCAGCTAGCTATGCTTGACTAAAAGATCTTTTAAGGTAAACCTACATCTTTCTCTATTTTCTTCAGGATGCTTAATCTAGAGTTTTATCTTCACTTCAGAAATTTTTATATGAGGATTTTTTCTTTATCCAGAGAGCTGCAAACACGGGCTGGGGGGCAGCGGAGGATGCAAGTTCAAAGTGGGGACATGACAAGTTTGATGACCCAAACGATCGTGATAGAGAACTGTGTGCGAAAGGAAGGAAAAATAGTGATGACTTGGAAAGACATCCTAGGGAAATTAGTGGGAGGCAGGAAAATAAACTGAAAGGCCGAGACGATAATAAAGAATCAGAACTCCAGTCGAGAGGGGATGGTAGGAAAGATGAGAAGAGATTGAGGAGACATGATGTTGACGAAAACCATGAGCTGAGGTCAGGAGATGATCGTTATAGAAGGGAAGAGACAAGATCTAGAAGGAATGATGACAATGGTGGGAAAGAAGAGACGAGATTGAGAAGATACGACGATGATGAGACGAAGTTAGGAGATAAAAATTATAAGAAGGAAGAAAAGAGATCTAGAAGGAACCATGACGATGAACTCCCACAGCATTCAAGAAGAGACTACAATAGGAAGGAAGAAGACAGATCAAAAAGGCATGGTGATGAAGAGTATCAGCCAAAGTTGAGGGAAGATGATAACAGAAGGGAAAGAGATATATCGGCAAGACATCACTCAGAATCATATAGGAGGGAAAATGAAGATGAGAAAAGAGATTTTCGATCCTCTCATGGTAGAGATTCTTCCTCACATTCTCACAGAGAAAGAAACGACGATCGTCATAGAGAAAGAAATGAAGATCGTCGTAGATAAAAGTGACGAGGATGCAATAGATGATTTGGGTTTTGGCTTGAGAACATATTATGGTTTTCTGATGGCCTGTATGGTTTACTTGTATTGTAATAGGAACCTTTTTTGGCCCCTCAGTCGTTTTGATAAGAAAAGTAAAGTTCTTTGGGTTGTTGGAATCTTACCCTTGTGACTTGTGAGTGGTTGTAAGAATTATGCGCAAATTTTTATGACAGGATCATGTATGTTGGCTTTAGAATATGGATCATTTCAATTTCAAGAATATTCTTCTCATGTTATTGTCAACCATTCAGGGTGCACTTGCAATGTGGGTGGCGTGGCATCCTTTTGGTATAATCTTAAGGTCCACCTCTAGATTGAGAATAATCA

mRNA sequence

ATGAATCCTCTAACCCTAGTCAAACGCATCCAGAAAATAAATTCTCAAGAGGCCTCGCTTGGGATTTCCGAGGAAGCTTCATGGCACGCCAAGTACAAAGATTCCGCCTACGTTTTCGTCGGAGGCATTCCTTACGACCTCACTGAGGGCGATCTCCTCGCCGTTTTCGCTCAATCGTTTTTAGTCGACAGTCTTGGCTGGTTTGAATTGCCTTTTAATGGCGAAAGCCTCTCAAAGATCAGTGGGGTTGATCCTAAGCATAGTGCAATAAATCCTTTTGCTTTCTGGAATTTGAAATGTGCTTGGTCGTACAGATATGGAGAGATTGTAGATGTTAATCTTGTCAGAGACAAGGGTACAGGAAAATCAAAAGGCTTTGCCTTCGTTGCATATGAAGATCAGAGAAGTACAAACCTTGCTGTAGTAATATGTTTGTCACTTTCAGATAATTTGAACGGTGCACAGATTCTAGGTCGAATCATTAGGGTCGATCATGTTACTAAATATAAAAAGAAGGAAGAAGAAGATGAAGAGACAGAACAAAAAAAGAGGGAAGCTCGGGGTGTTTGCCGTGCATTTCAAAGGGGTGAATGTACCCGTGGAGCTGGATGCAAATTCTCTCACGATGAGCAGAGAGCTGCAAACACGGGCTGGGGGGCAGCGGAGGATGCAAGTTCAAAGTGGGGACATGACAAGTTTGATGACCCAAACGATCGTGATAGAGAACTGTGTGCGAAAGGAAGGAAAAATAGTGATGACTTGGAAAGACATCCTAGGGAAATTAGTGGGAGGCAGGAAAATAAACTGAAAGGCCGAGACGATAATAAAGAATCAGAACTCCAGTCGAGAGGGGATGGTAGGAAAGATGAGAAGAGATTGAGGAGACATGATGTTGACGAAAACCATGAGCTGAGGTCAGGAGATGATCGTTATAGAAGGGAAGAGACAAGATCTAGAAGGAATGATGACAATGGTGGGAAAGAAGAGACGAGATTGAGAAGATACGACGATGATGAGACGAAGTTAGGAGATAAAAATTATAAGAAGGAAGAAAAGAGATCTAGAAGGAACCATGACGATGAACTCCCACAGCATTCAAGAAGAGACTACAATAGGAAGGAAGAAGACAGATCAAAAAGGCATGGTGATGAAGAGTATCAGCCAAAGTTGAGGGAAGATGATAACAGAAGGGAAAGAGATATATCGGCAAGACATCACTCAGAATCATATAGGAGGGAAAATGAAGATGAGAAAAGAGATTTTCGATCCTCTCATGGTAGAGATTCTTCCTCACATTCTCACAGAGAAAGAAACGACGATCGTCATAGAGAAAGAAATGAAGATCGTCGTAGATAA

Coding sequence (CDS)

ATGAATCCTCTAACCCTAGTCAAACGCATCCAGAAAATAAATTCTCAAGAGGCCTCGCTTGGGATTTCCGAGGAAGCTTCATGGCACGCCAAGTACAAAGATTCCGCCTACGTTTTCGTCGGAGGCATTCCTTACGACCTCACTGAGGGCGATCTCCTCGCCGTTTTCGCTCAATCGTTTTTAGTCGACAGTCTTGGCTGGTTTGAATTGCCTTTTAATGGCGAAAGCCTCTCAAAGATCAGTGGGGTTGATCCTAAGCATAGTGCAATAAATCCTTTTGCTTTCTGGAATTTGAAATGTGCTTGGTCGTACAGATATGGAGAGATTGTAGATGTTAATCTTGTCAGAGACAAGGGTACAGGAAAATCAAAAGGCTTTGCCTTCGTTGCATATGAAGATCAGAGAAGTACAAACCTTGCTGTAGTAATATGTTTGTCACTTTCAGATAATTTGAACGGTGCACAGATTCTAGGTCGAATCATTAGGGTCGATCATGTTACTAAATATAAAAAGAAGGAAGAAGAAGATGAAGAGACAGAACAAAAAAAGAGGGAAGCTCGGGGTGTTTGCCGTGCATTTCAAAGGGGTGAATGTACCCGTGGAGCTGGATGCAAATTCTCTCACGATGAGCAGAGAGCTGCAAACACGGGCTGGGGGGCAGCGGAGGATGCAAGTTCAAAGTGGGGACATGACAAGTTTGATGACCCAAACGATCGTGATAGAGAACTGTGTGCGAAAGGAAGGAAAAATAGTGATGACTTGGAAAGACATCCTAGGGAAATTAGTGGGAGGCAGGAAAATAAACTGAAAGGCCGAGACGATAATAAAGAATCAGAACTCCAGTCGAGAGGGGATGGTAGGAAAGATGAGAAGAGATTGAGGAGACATGATGTTGACGAAAACCATGAGCTGAGGTCAGGAGATGATCGTTATAGAAGGGAAGAGACAAGATCTAGAAGGAATGATGACAATGGTGGGAAAGAAGAGACGAGATTGAGAAGATACGACGATGATGAGACGAAGTTAGGAGATAAAAATTATAAGAAGGAAGAAAAGAGATCTAGAAGGAACCATGACGATGAACTCCCACAGCATTCAAGAAGAGACTACAATAGGAAGGAAGAAGACAGATCAAAAAGGCATGGTGATGAAGAGTATCAGCCAAAGTTGAGGGAAGATGATAACAGAAGGGAAAGAGATATATCGGCAAGACATCACTCAGAATCATATAGGAGGGAAAATGAAGATGAGAAAAGAGATTTTCGATCCTCTCATGGTAGAGATTCTTCCTCACATTCTCACAGAGAAAGAAACGACGATCGTCATAGAGAAAGAAATGAAGATCGTCGTAGATAA

Protein sequence

MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSFLVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGTGKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRDRELCAKGRKNSDDLERHPREISGRQENKLKGRDDNKESELQSRGDGRKDEKRLRRHDVDENHELRSGDDRYRREETRSRRNDDNGGKEETRLRRYDDDETKLGDKNYKKEEKRSRRNHDDELPQHSRRDYNRKEEDRSKRHGDEEYQPKLREDDNRRERDISARHHSESYRRENEDEKRDFRSSHGRDSSSHSHRERNDDRHRERNEDRRR

Homology

[Close]

BLAST of Spg000857 vs. NCBI nr
Match: KAG7010507.1 (Zinc finger CCCH domain-containing protein 42, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 573.2 bits (1476), Expect = 2.0e-159
Identity = 340/447 (76.06%), Postives = 355/447 (79.42%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIVDVNLVRDKGT
Sbjct: 61  ---------------------------------------------YGEIVDVNLVRDKGT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKGFAFVAYEDQRST LAV       DNLNGAQILGRIIRVDHVTKYKKKEEEDEETE
Sbjct: 121 GKSKGFAFVAYEDQRSTILAV-------DNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDD  DRD
Sbjct: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDKKDRD 240

Query: 241 RELCAKGRKNSDDLERHPREISG--RQENKLKGRDDNKESELQSR-GDGRKDEKRLRRHD 300
           REL AKGRKNSDDLERHPREISG  RQE+KLKG DD KESEL+SR   GRKDEKR+ RHD
Sbjct: 241 RELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHGRKDEKRMSRHD 300

Query: 301 VDENHELRSGDDRYRREETRSRRNDDNGGKEETRLRRY--DDDETKLGDKNYKKEEKRSR 360
            D N EL+ GDDRY+REE RSRRN D+  KEETRLRR+  DDD+TKL D ++KKEE+RSR
Sbjct: 301 PDSNRELKLGDDRYKREEKRSRRNHDDSEKEETRLRRHGDDDDKTKLEDDHHKKEERRSR 360

Query: 361 RNHDDELPQHSRRDYNRKEEDRSKRHGDEEYQPKLRED-DNRRERDISARHHSESYRREN 420
           RN DDELP HSRRDYN +EEDRSKRHGDEEYQ K RED D+RRERD S RH SES+RREN
Sbjct: 361 RNQDDELPPHSRRDYNTREEDRSKRHGDEEYQQKPREDGDDRRERDKSTRHRSESHRREN 390

Query: 421 EDEKRDFRSSHGRDSSSHSHRERNDDR 442
            DEKRD RSSHGRD   HSHRERN+DR
Sbjct: 421 PDEKRDSRSSHGRD---HSHRERNEDR 390

[Close]

BLAST of Spg000857 vs. NCBI nr
Match: XP_023512686.1 (zinc finger CCCH domain-containing protein 25 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 571.2 bits (1471), Expect = 7.7e-159
Identity = 340/449 (75.72%), Postives = 355/449 (79.06%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIVDVNLVRDKGT
Sbjct: 61  ---------------------------------------------YGEIVDVNLVRDKGT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKGFAFVAYEDQRST LAV       DNLNGAQILGRIIRVDHVTKYKKKEEEDEETE
Sbjct: 121 GKSKGFAFVAYEDQRSTILAV-------DNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDD  DRD
Sbjct: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDKKDRD 240

Query: 241 RELCAKGRKNSDDLERHPREISG--RQENKLKGRDDNKESELQSR-GDGRKDEKRLRRHD 300
           REL AKGRKNSDDLERHPRE SG  RQE+KLKG DD KESEL+SR   GRKDEKRL RHD
Sbjct: 241 RELRAKGRKNSDDLERHPRETSGRARQESKLKGWDDGKESELKSRENHGRKDEKRLSRHD 300

Query: 301 VDENHELRSGDDRYRREETRSRRNDDNGGKEETRLRRY--DDDETKLGDKNYKKEEKRSR 360
            D N EL+SGDDRYRREE RS RN D+  KE+ RLRR+  DDD+TKL D ++KKEE+RSR
Sbjct: 301 PDSNRELKSGDDRYRREEKRSSRNHDDSEKEDKRLRRHGDDDDKTKLEDDHHKKEERRSR 360

Query: 361 RNHDDELPQHSRRDYNRKEEDRSKRHGDEEYQPKLREDD-NRRERDISARHHSESYRREN 420
           RN DDELP HSRRDYN++EEDRSKRHGDEEYQ K REDD +RRERD S RH SES+RREN
Sbjct: 361 RNQDDELPPHSRRDYNKREEDRSKRHGDEEYQQKPREDDGDRRERDKSTRHRSESHRREN 392

Query: 421 EDEKRDFRSSHGRDSSSHSHRERNDDRHR 444
            DEKRD RSSHGRD   HSHRERN+DR R
Sbjct: 421 PDEKRDSRSSHGRD---HSHRERNEDRRR 392

[Close]

BLAST of Spg000857 vs. NCBI nr
Match: XP_022944591.1 (zinc finger CCCH domain-containing protein 25 [Cucurbita moschata])

HSP 1 Score: 569.7 bits (1467), Expect = 2.2e-158
Identity = 340/449 (75.72%), Postives = 354/449 (78.84%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIVDVNLVRDKGT
Sbjct: 61  ---------------------------------------------YGEIVDVNLVRDKGT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKGFAFVAYEDQRST LAV       DNLNGAQILGRIIRVDHVTKYKKKEEEDEETE
Sbjct: 121 GKSKGFAFVAYEDQRSTILAV-------DNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDD  DRD
Sbjct: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDKKDRD 240

Query: 241 RELCAKGRKNSDDLERHPREISG--RQENKLKGRDDNKESELQSR-GDGRKDEKRLRRHD 300
           REL AKGRKNSDDLERHPREISG  RQE+KLKG DD KESEL+SR   GRKDEKR+ RHD
Sbjct: 241 RELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHGRKDEKRMSRHD 300

Query: 301 VDENHELRSGDDRYRREETRSRRNDDNGGKEETRLRRY--DDDETKLGDKNYKKEEKRSR 360
            D N EL+SGDDRY+REE RSRRN D+  KEE RLRR+  DDD+TKL D + KKEE+RSR
Sbjct: 301 PDSNRELKSGDDRYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDDHDKKEERRSR 360

Query: 361 RNHDDELPQHSRRDYNRKEEDRSKRHGDEEYQPKLRED-DNRRERDISARHHSESYRREN 420
           RN DDELP HSRRDYN +EEDRSKRHGDEEYQ K RED D+RRERD S RH SES+RREN
Sbjct: 361 RNQDDELPPHSRRDYNSREEDRSKRHGDEEYQQKPREDNDDRRERDKSTRHRSESHRREN 392

Query: 421 EDEKRDFRSSHGRDSSSHSHRERNDDRHR 444
            DEKRD RSSHGRD   HSHRERN+D  R
Sbjct: 421 PDEKRDSRSSHGRD---HSHRERNEDHRR 392

[Close]

BLAST of Spg000857 vs. NCBI nr
Match: KAG6570659.1 (Zinc finger CCCH domain-containing protein 42, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 569.7 bits (1467), Expect = 2.2e-158
Identity = 339/449 (75.50%), Postives = 355/449 (79.06%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIVDVNLVRDKGT
Sbjct: 61  ---------------------------------------------YGEIVDVNLVRDKGT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKGFAFVAYEDQRST LAV       DNLNGAQILGRIIRVDHVTKYKKKEEEDEETE
Sbjct: 121 GKSKGFAFVAYEDQRSTILAV-------DNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDD  DRD
Sbjct: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDKKDRD 240

Query: 241 RELCAKGRKNSDDLERHPREISG--RQENKLKGRDDNKESELQSR-GDGRKDEKRLRRHD 300
           REL AKGRKNSDDLERHPREISG  RQE+KLKG DD K+SEL+ R   GRKDEKR+ RHD
Sbjct: 241 RELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKKSELKLRENHGRKDEKRMSRHD 300

Query: 301 VDENHELRSGDDRYRREETRSRRNDDNGGKEETRLRRY--DDDETKLGDKNYKKEEKRSR 360
            D N EL+SGDDRY+REE RSRRN D+  KEE RLRR+  DDD+TKL D ++KKEE+RSR
Sbjct: 301 PDSNRELKSGDDRYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDDHHKKEERRSR 360

Query: 361 RNHDDELPQHSRRDYNRKEEDRSKRHGDEEYQPKLRE-DDNRRERDISARHHSESYRREN 420
           RN DDELP HSRRDYN +EEDRSKRHGDEEYQ K RE DD+RRERD S RH SES+RREN
Sbjct: 361 RNQDDELPPHSRRDYNTREEDRSKRHGDEEYQQKPREDDDDRRERDKSTRHRSESHRREN 392

Query: 421 EDEKRDFRSSHGRDSSSHSHRERNDDRHR 444
            DEKRD RSSHGRD   HSHRERN+DR R
Sbjct: 421 PDEKRDSRSSHGRD---HSHRERNEDRRR 392

[Close]

BLAST of Spg000857 vs. NCBI nr
Match: XP_038902704.1 (zinc finger CCCH domain-containing protein 25-like [Benincasa hispida])

HSP 1 Score: 564.7 bits (1454), Expect = 7.2e-157
Identity = 330/446 (73.99%), Postives = 349/446 (78.25%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLTLVKRIQKIN+QEASLGISEEASWHAKYKDSAYVF GGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTLVKRIQKINAQEASLGISEEASWHAKYKDSAYVFAGGIPYDLTEGDLLAVFAQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIVDVNL+RDKGT
Sbjct: 61  ---------------------------------------------YGEIVDVNLIRDKGT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKG+AFVAYEDQRSTNLAV       DNLNGAQILGRIIRVDHV  YKKKEEEDEE E
Sbjct: 121 GKSKGYAFVAYEDQRSTNLAV-------DNLNGAQILGRIIRVDHVHNYKKKEEEDEEEE 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDD  D D
Sbjct: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 240

Query: 241 RELCAKGRKNSDDLERHPREISG--RQENKLKGRDDNKESELQSRGD-GRKDEKRLRRHD 300
           REL AKGRKNSDDLERHPRE SG  RQENKLKG DD+KE EL+SR D   KDEKR RRHD
Sbjct: 241 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDDSKELELKSREDHDWKDEKRSRRHD 300

Query: 301 VDENHELRSGDDRYRREETRSRRNDDNGGKEETRLRRYDDDETKLGDKNYKKEEKRSRRN 360
           +D + EL+SGDD Y REE R +RN D+ GKEE RLR+ DDDETKL D  Y KEE R RRN
Sbjct: 301 LDGSRELKSGDDYYNREEKRFKRNHDDNGKEEKRLRKRDDDETKLEDNRYMKEENRYRRN 360

Query: 361 HDDELPQHSRRDYNRKEEDRSKRHGDEEYQPKLREDDNRRERDISARHHSESYRRENEDE 420
            D ELPQHS+RDYNR EEDRSKRHGD+EY PK R+DD+RRE+DIS RH SES+RREN DE
Sbjct: 361 QDYELPQHSKRDYNR-EEDRSKRHGDDEYWPKRRDDDSRREKDISVRHRSESHRRENPDE 391

Query: 421 KRDFRSSHGRDSSSHSHRERNDDRHR 444
           KRD+RSSHGRDSSSHSHRERN+DR R
Sbjct: 421 KRDYRSSHGRDSSSHSHRERNEDRRR 391

[Close]

BLAST of Spg000857 vs. ExPASy Swiss-Prot
Match: Q9SD61 (Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=At3g47120 PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 6.5e-68
Identity = 195/416 (46.88%), Postives = 238/416 (57.21%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLT VK +QKIN++E+ LGIS+EASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+Q  
Sbjct: 1   MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIVDVNL+RDKGT
Sbjct: 61  ---------------------------------------------YGEIVDVNLIRDKGT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKGFAF+AYEDQRST LAV       DNLNGA +LGR I+VDH   YKK EEEDEET 
Sbjct: 121 GKSKGFAFLAYEDQRSTILAV-------DNLNGALVLGRTIKVDHCGAYKKHEEEDEETR 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
           ++ REARGVCRAFQRGECTRG  CKFSHDE+RAANTGWG  ED SSKW HDK  +     
Sbjct: 181 RQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNREGRGVC 240

Query: 241 REL----CAKGR--KNSDDLERHPREISGRQENKLKGRDDNK-------ESELQSRGDGR 300
           R      C +G   K S D +R      G +E++    D +K        +   +RGD +
Sbjct: 241 RAFQRGECTRGDSCKFSHDEKRAATTGWGHEEDRSSKWDQDKLNGAKKGGTSFGNRGDFK 300

Query: 301 KD--EKRLR-RHDVDENHELRSGDDRYRREETRSRRNDDNGGKEETRLRRYDDDETKL-- 360
            D  EK  R R D D ++      +R  RE+   R  D    KE+ R  RYD+  ++   
Sbjct: 301 PDVEEKSYRGRGDGDASYGRPKERERVDREDMGPRSRDAYDMKEQKRSGRYDNAYSRRHN 352

Query: 361 GDKNYKKEEKRSRRNHDDELPQHSRRDYN-RKEEDRSKRHGDEEYQPKLREDDNRR 398
            + +Y +E+K SR    ++    SRRD N R+E+DR            LR +D RR
Sbjct: 361 DEIDYVREDKGSRAQDWEKRKAESRRDRNDREEKDRD----------SLRREDRRR 352

[Close]

BLAST of Spg000857 vs. ExPASy Swiss-Prot
Match: Q10B98 (Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0826400 PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.2e-67
Identity = 183/383 (47.78%), Postives = 219/383 (57.18%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLT VKR Q IN +EA LGI E+ SWHAK+KDSAYVFVGGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTQVKRTQVINQKEALLGIGEDGSWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGE+VDVNLVRDKGT
Sbjct: 61  ---------------------------------------------YGEVVDVNLVRDKGT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKGFAF+AYEDQRST LAV       DNLNGA++LGRI+RVDHV+KYKKKEEEDEE  
Sbjct: 121 GKSKGFAFLAYEDQRSTILAV-------DNLNGAKVLGRIVRVDHVSKYKKKEEEDEEEL 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
           QKKREARGVC AFQ+GEC RGA C++SHDEQR ANTGWG+ E++ ++W HD+  +P    
Sbjct: 181 QKKREARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRHHEP---- 240

Query: 241 RELCAKGRKNSDDLERHPREISGRQENKLKGRDDNKESELQSRGDGRKD-EKRLRRHDVD 300
             +  K   +S   +R P     ++ENK  GR+        SR +  KD + RLR  D  
Sbjct: 241 -PMSHKKFPSSAGEQRFPDR--AKEENKSTGREGQ-----SSRSEAYKDRDSRLRHSDRG 300

Query: 301 ENHELRSGDDR--YRREETRSRRNDDNGGKEETRLRRYDDDETKLGDKNYKKEEKRSRRN 360
                R   DR   R    R R ND      + +  RY  +      K+ + ++KRSRR+
Sbjct: 301 SKDHDRYRHDRSPERSRGDRQRNNDRYAQGRDEKSERYRSEV-----KHDEGDQKRSRRD 311

Query: 361 HDDELPQHSRRDYNRKEEDRSKR 381
            D     + RR     E  R  R
Sbjct: 361 TDSS-GHYERRGNEDSERYRKSR 311

[Close]

BLAST of Spg000857 vs. ExPASy Swiss-Prot
Match: B0BN49 (RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus OX=10116 GN=Rbmx2 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.5e-24
Identity = 127/420 (30.24%), Postives = 181/420 (43.10%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLT VK I ++N +E  LG++E+ SWH++YKDSA++F+GG+PY+LTEGD++ VF+Q  
Sbjct: 1   MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIV++NLVRDK T
Sbjct: 61  ---------------------------------------------YGEIVNINLVRDKKT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKGF F+ YEDQRST LAV       DN NG +I GR IRVDHV  Y+  +E ++  +
Sbjct: 121 GKSKGFCFLCYEDQRSTVLAV-------DNFNGIKIKGRTIRVDHVANYRAPQESEDVDD 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
                   V R  Q   C               A T   +  + S            D D
Sbjct: 181 --------VTRELQEKGC--------------GAKTPPSSPPEVS-----------EDED 240

Query: 241 RELCAKGRKNSDDLERHPREISGRQENKLKGRDDNKESELQSRGDGRKDEKRLRRHDVDE 300
            ++  K +K+             ++E K K   +  E  +Q+        K ++  D   
Sbjct: 241 AKVTKKPKKD-------------KKEKKKKKEKEKTERPVQAELPSCSRSKTVKETDEQS 300

Query: 301 NHELRS-GDDRYRREETRSRRNDDNGGKE-ETRLR-RYDDDETKLGDKNYKKEEKRSRRN 360
             +  S   +R ++ E R R+   +G  +  T  R R ++ E +   + +K E K S R 
Sbjct: 301 AKKHSSKPSERAQKSECRERKKSHSGSPDGRTSCRGRAEEPEWEAKKEKHKHEHKPSSRR 318

Query: 361 HDDELPQHSRRDYNRKEEDRSKRH--GDEEYQPKLREDDNRRERDISARHHSESYRRENE 416
             +E  +   +D  R     S RH    E    + R     R  D S RH    Y  E E
Sbjct: 361 EGEE--KSRDKDRGRSSGTHSSRHHGHSEGRSHRSRSRSRSRSPDRSHRHKKHRYSHERE 318

[Close]

BLAST of Spg000857 vs. ExPASy Swiss-Prot
Match: Q9Y388 (RNA-binding motif protein, X-linked 2 OS=Homo sapiens OX=9606 GN=RBMX2 PE=1 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-23
Identity = 121/416 (29.09%), Postives = 180/416 (43.27%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLT VK I ++N +E  LG++++ SWH++YKDSA++F+GG+PY+LTEGD++ VF+Q  
Sbjct: 1   MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIV++NLVRDK T
Sbjct: 61  ---------------------------------------------YGEIVNINLVRDKKT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKY---KKKEEEDE 180
           GKSKGF F+ YEDQRST LAV       DN NG +I GR IRVDHV+ Y   K  EE D+
Sbjct: 121 GKSKGFCFLCYEDQRSTILAV-------DNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDD 180

Query: 181 ETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPN 240
            T Q + +                               G GA   + S     + + P 
Sbjct: 181 VTRQLQEK-------------------------------GCGARTPSPSLSESSEDEKPT 240

Query: 241 DRDRELCAKGRKNSDDLERHPREISGRQENKLKGRDDNKESELQSRGDGRKDEKRLRRHD 300
            + ++   + +K   + E+  RE+   Q +    R    +          KD+   ++H 
Sbjct: 241 KKHKKDKKEKKKKKKEKEKADREVQAEQPSSSSPRRKTVK---------EKDDTGPKKHS 300

Query: 301 VDENHELRSGDDRYRREETRSRRNDDNGGKEETR--LRRYDDDETKLGDKNYKKEEKRSR 360
              +   +  + R  ++  +SR     G ++  R   +     E K   +   +EEK   
Sbjct: 301 SKNSERAQKSEPREGQKLPKSRTAYSGGAEDLERELKKEKPKHEHKSSSRREAREEKTRI 321

Query: 361 RNHDDELPQHSRRDYNRKEEDRSKRHGDEEYQPKLREDDNRRERDISARHHSESYR 412
           R+       HS   YN + E RS R          R    RR R+  + + S+ +R
Sbjct: 361 RDRGRSSDAHSSW-YNGRSEGRSYRSRSRSRDKSHRHKRARRSRERESSNPSDRWR 321

[Close]

BLAST of Spg000857 vs. ExPASy Swiss-Prot
Match: Q8R0F5 (RNA-binding motif protein, X-linked 2 OS=Mus musculus OX=10090 GN=Rbmx2 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.4e-23
Identity = 128/432 (29.63%), Postives = 186/432 (43.06%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLT VK I ++N +E  LG++E+ SWH++YK SA++FVGG+PY+LTEGD++ VF+Q  
Sbjct: 1   MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKHSAWIFVGGLPYELTEGDIICVFSQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIV++NLVRDK T
Sbjct: 61  ---------------------------------------------YGEIVNINLVRDKKT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKGF F+ YEDQRST LAV       DN NG +I GR IRVDHV+ Y +  +E E+ +
Sbjct: 121 GKSKGFCFLCYEDQRSTVLAV-------DNFNGIKIKGRTIRVDHVSNY-RAPQESEDVD 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
              RE +            +G G K          T   +  + S            D D
Sbjct: 181 DVTRELQ-----------EKGCGVK----------TPPSSPPEVS-----------EDED 240

Query: 241 RELCAKGRKNSDDLERHPREISGRQENKLKGRDDNKESELQSRGDGRKDEKRLRRHDVDE 300
            +L  K +K+  + ++  +E     + + + + +       +    +KDE+  R+H    
Sbjct: 241 AKLTKKHKKDKKEKKKRKKE-----KTEGQAQAEQPSCSRSATVKEKKDERASRKHSSKT 300

Query: 301 NHELRSGDDRYRREETRSRRNDDNGGKEETRLRRYDDDETKLGDKNYKKEEKRSRRNHDD 360
           +   +  +    RE  +S     +G    +   R +D E K   +  K E K + R   +
Sbjct: 301 SERAQKSE---HRESKKSHSGSPDG--RSSYHARAEDPECKARKEKPKHEHKSASRREAE 326

Query: 361 ELPQHSRRDYNRKEEDRSKRHGDEEYQPKLREDDNRRERDISARHHSESYRRENEDEKRD 420
           E  +   R+  R     S RH         R     R  D S RH    + RE +     
Sbjct: 361 E--KSRERERGRSSGTHSGRHRGHSDGRSHRSRSRSRSPDKSHRHKKYRHSRERD----- 326

Query: 421 FRSSHGRDSSSH 433
             S HG D   H
Sbjct: 421 --SYHGSDRRHH 326

[Close]

BLAST of Spg000857 vs. ExPASy TrEMBL
Match: A0A6J1FUU2 (zinc finger CCCH domain-containing protein 25 OS=Cucurbita moschata OX=3662 GN=LOC111449004 PE=4 SV=1)

HSP 1 Score: 569.7 bits (1467), Expect = 1.1e-158
Identity = 340/449 (75.72%), Postives = 354/449 (78.84%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIVDVNLVRDKGT
Sbjct: 61  ---------------------------------------------YGEIVDVNLVRDKGT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKGFAFVAYEDQRST LAV       DNLNGAQILGRIIRVDHVTKYKKKEEEDEETE
Sbjct: 121 GKSKGFAFVAYEDQRSTILAV-------DNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDD  DRD
Sbjct: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDKKDRD 240

Query: 241 RELCAKGRKNSDDLERHPREISG--RQENKLKGRDDNKESELQSR-GDGRKDEKRLRRHD 300
           REL AKGRKNSDDLERHPREISG  RQE+KLKG DD KESEL+SR   GRKDEKR+ RHD
Sbjct: 241 RELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHGRKDEKRMSRHD 300

Query: 301 VDENHELRSGDDRYRREETRSRRNDDNGGKEETRLRRY--DDDETKLGDKNYKKEEKRSR 360
            D N EL+SGDDRY+REE RSRRN D+  KEE RLRR+  DDD+TKL D + KKEE+RSR
Sbjct: 301 PDSNRELKSGDDRYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDDHDKKEERRSR 360

Query: 361 RNHDDELPQHSRRDYNRKEEDRSKRHGDEEYQPKLRED-DNRRERDISARHHSESYRREN 420
           RN DDELP HSRRDYN +EEDRSKRHGDEEYQ K RED D+RRERD S RH SES+RREN
Sbjct: 361 RNQDDELPPHSRRDYNSREEDRSKRHGDEEYQQKPREDNDDRRERDKSTRHRSESHRREN 392

Query: 421 EDEKRDFRSSHGRDSSSHSHRERNDDRHR 444
            DEKRD RSSHGRD   HSHRERN+D  R
Sbjct: 421 PDEKRDSRSSHGRD---HSHRERNEDHRR 392

[Close]

BLAST of Spg000857 vs. ExPASy TrEMBL
Match: A0A6J1JFA2 (zinc finger CCCH domain-containing protein 25 OS=Cucurbita maxima OX=3661 GN=LOC111484487 PE=4 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 3.9e-156
Identity = 336/449 (74.83%), Postives = 355/449 (79.06%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIVDVNLVRDKGT
Sbjct: 61  ---------------------------------------------YGEIVDVNLVRDKGT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKGFAFVAYEDQRST LAV       DNLNGAQILGRIIRVDHVTKYKKKEEEDEETE
Sbjct: 121 GKSKGFAFVAYEDQRSTILAV-------DNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDD  DRD
Sbjct: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDKKDRD 240

Query: 241 RELCAKGRKNSDDLERHPREISG--RQENKLKGRDDNKESELQSR-GDGRKDEKRLRRHD 300
           REL AKGRKNSDD ER+PREISG  RQE+KLKG DD KESEL+SR   GRKDEKRL RHD
Sbjct: 241 RELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELKSRENHGRKDEKRLSRHD 300

Query: 301 VDENHELRSGDDRYRREETRSRRNDDNGGKEETRLRRY--DDDETKLGDKNYKKEEKRSR 360
            D N EL+SGDD Y+REE RSRRN D+  KEE RLRR+  DDD+TKL D+++ KEE+RSR
Sbjct: 301 PDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDEHH-KEERRSR 360

Query: 361 RNHDDELPQHSRRDYNRKEEDRSKRHGDEEYQPKLRED-DNRRERDISARHHSESYRREN 420
           RN DDELP HSRRDYN +EED+SKRHGDEE+Q K RED D+RRERD S RH SES+RREN
Sbjct: 361 RNQDDELPPHSRRDYNTREEDKSKRHGDEEFQKKPREDEDDRRERDKSTRHRSESHRREN 391

Query: 421 EDEKRDFRSSHGRDSSSHSHRERNDDRHR 444
            DEKRD RSS+GRD   HSHRERN+DRHR
Sbjct: 421 PDEKRDSRSSYGRD---HSHRERNEDRHR 391

[Close]

BLAST of Spg000857 vs. ExPASy TrEMBL
Match: A0A5D3BDJ8 (Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00830 PE=4 SV=1)

HSP 1 Score: 548.9 bits (1413), Expect = 2.0e-152
Identity = 328/471 (69.64%), Postives = 367/471 (77.92%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQGN 60

Query: 61  LVDSLGWFE-LPFNGESLSKISGVDP----KHSAINPFAFWNL----------------K 120
            +  +G FE        +S++    P    K+S ++   + N                 K
Sbjct: 61  HMRRVGMFEDTSLGPRFISQVENSAPIDVIKNSILSLKKYANHGTQNLCFLAGASLGVGK 120

Query: 121 CAWSYR-YGEIVDVNLVRDKGTGKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILG 180
            +W    YGEIVDVNL+RDKGTGKSKG+AFVAYEDQRSTNLAV       DNLNGAQILG
Sbjct: 121 ASWQLAGYGEIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAV-------DNLNGAQILG 180

Query: 181 RIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGW 240
           RI+RVDH +KYKKKEEEDEE +QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGW
Sbjct: 181 RIVRVDHASKYKKKEEEDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGW 240

Query: 241 GAAEDASSKWGHDKFDDPNDRDRELCAKGRKNSDDLERHPREISG--RQENKLKGRDDNK 300
           G AEDASSKWGHDKFD   + ++EL AKGRKNSD+L RHPRE SG  RQEN+LKG DD+K
Sbjct: 241 GVAEDASSKWGHDKFDGRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSK 300

Query: 301 ESELQSRGD-GRKDEKRLRRHDVDENHELRSGDDRYRREETRSRRNDDNGGKEETRLRRY 360
           ESEL+SR D G KDEKR RR+D+D N + +SGDD Y+REE RSRRN D+  K+E R R++
Sbjct: 301 ESELKSREDHGEKDEKRSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKH 360

Query: 361 -DDDETKLGDKNYKKEEKRSRRNHDDELPQHSRRDYNRKEEDR-SKRHGDEEYQPKLRED 420
            DDDE K  D  Y+KEE R RRN D+ELPQHSRRDYN +EEDR SKRHGD EY PKLRED
Sbjct: 361 DDDDEMKSEDDRYRKEENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLRED 420

Query: 421 DNRRERDISARHHSESYRRENEDEKRDFRSSH-GRDSSSHSHRERNDDRHR 444
           D RRERDIS RH SES+RREN DEKRD+ SS  GRDSSSHSHRERN+D HR
Sbjct: 421 DKRRERDISVRHRSESHRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR 464

[Close]

BLAST of Spg000857 vs. ExPASy TrEMBL
Match: A0A0A0KZW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308540 PE=4 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 1.6e-149
Identity = 319/449 (71.05%), Postives = 349/449 (77.73%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIVDVNL+RDKGT
Sbjct: 61  ---------------------------------------------YGEIVDVNLIRDKGT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKG+AFVAYEDQRSTNLAV       DNLNGAQILGRI+RVDHV+KYKKKEEEDEE E
Sbjct: 121 GKSKGYAFVAYEDQRSTNLAV-------DNLNGAQILGRIVRVDHVSKYKKKEEEDEEEE 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWGAAEDASSKWGHDKFD   + D
Sbjct: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDASSKWGHDKFDSRKNHD 240

Query: 241 RELCAKGRKNSDDLERHPREISG--RQENKLKGRDDNKESELQSRGD-GRKDEKRLRRHD 300
           +EL AKGRK SD+L RHPRE SG  RQEN+ +G DD+KESEL+SR D G KDEKR RR+D
Sbjct: 241 KELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEKRSRRYD 300

Query: 301 VDENHELRSGDDRYRREETRSRRNDDNGGKEETRLRRYD-DDETKLGDKNYKKEEKRSRR 360
           +D N + +SGDD+Y+ EE RS RN D+  K+E R R++D DDE KL D  Y+KEE R RR
Sbjct: 301 LDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKEENRYRR 360

Query: 361 NHDDELPQHSRRDYNRKEEDR-SKRHGDEEYQPKLREDDNRRERDISARHHSESYRRENE 420
           N D+ELPQHSRRDY  +EEDR SKRHGD+EY PKLREDD RRERD+S RH SESYRREN 
Sbjct: 361 NQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSESYRRENP 395

Query: 421 DEKRDFRSSH-GRDSSSHSHRERNDDRHR 444
           DEKRD+RSSH GRDSSSHSHRERN+DR R
Sbjct: 421 DEKRDYRSSHGGRDSSSHSHRERNEDRRR 395

[Close]

BLAST of Spg000857 vs. ExPASy TrEMBL
Match: A0A5A7TUW9 (Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G00260 PE=4 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 5.0e-148
Identity = 318/449 (70.82%), Postives = 347/449 (77.28%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIVDVNL+RDKGT
Sbjct: 61  ---------------------------------------------YGEIVDVNLIRDKGT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKG+AFVAYEDQRSTNLAV       DNLNGAQILGRI+RVDH +KYKKKEEEDEE +
Sbjct: 121 GKSKGYAFVAYEDQRSTNLAV-------DNLNGAQILGRIVRVDHASKYKKKEEEDEEEQ 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWG AEDASSKWGHDKFD   + +
Sbjct: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFDGRKNDN 240

Query: 241 RELCAKGRKNSDDLERHPREISG--RQENKLKGRDDNKESELQSRGD-GRKDEKRLRRHD 300
           +EL AKGRKNSD+L RHPRE SG  RQEN+LKG DD+KESEL+SR D G KDEKR RR+D
Sbjct: 241 KELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEKRSRRYD 300

Query: 301 VDENHELRSGDDRYRREETRSRRNDDNGGKEETRLRRY-DDDETKLGDKNYKKEEKRSRR 360
           +D N + +SGDD Y+REE RSRRN D+  K+E R R++ DDDE K  D  Y+KEE R RR
Sbjct: 301 LDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKEENRYRR 360

Query: 361 NHDDELPQHSRRDYNRKEEDR-SKRHGDEEYQPKLREDDNRRERDISARHHSESYRRENE 420
           N D+ELPQHSRRDYN +EEDR SKRHGD EY PKLREDD RRERDIS RH SES+RREN 
Sbjct: 361 NQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSESHRRENP 395

Query: 421 DEKRDFRSSH-GRDSSSHSHRERNDDRHR 444
           DEKRD+ SS  GRDSSSHSHRERN+D HR
Sbjct: 421 DEKRDYWSSQGGRDSSSHSHRERNEDCHR 395

[Close]

BLAST of Spg000857 vs. TAIR 10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 259.6 bits (662), Expect = 4.6e-69
Identity = 195/416 (46.88%), Postives = 238/416 (57.21%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQSF 60
           MNPLT VK +QKIN++E+ LGIS+EASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+Q  
Sbjct: 1   MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQ-- 60

Query: 61  LVDSLGWFELPFNGESLSKISGVDPKHSAINPFAFWNLKCAWSYRYGEIVDVNLVRDKGT 120
                                                        YGEIVDVNL+RDKGT
Sbjct: 61  ---------------------------------------------YGEIVDVNLIRDKGT 120

Query: 121 GKSKGFAFVAYEDQRSTNLAVVICLSLSDNLNGAQILGRIIRVDHVTKYKKKEEEDEETE 180
           GKSKGFAF+AYEDQRST LAV       DNLNGA +LGR I+VDH   YKK EEEDEET 
Sbjct: 121 GKSKGFAFLAYEDQRSTILAV-------DNLNGALVLGRTIKVDHCGAYKKHEEEDEETR 180

Query: 181 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDPNDRD 240
           ++ REARGVCRAFQRGECTRG  CKFSHDE+RAANTGWG  ED SSKW HDK  +     
Sbjct: 181 RQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNREGRGVC 240

Query: 241 REL----CAKGR--KNSDDLERHPREISGRQENKLKGRDDNK-------ESELQSRGDGR 300
           R      C +G   K S D +R      G +E++    D +K        +   +RGD +
Sbjct: 241 RAFQRGECTRGDSCKFSHDEKRAATTGWGHEEDRSSKWDQDKLNGAKKGGTSFGNRGDFK 300

Query: 301 KD--EKRLR-RHDVDENHELRSGDDRYRREETRSRRNDDNGGKEETRLRRYDDDETKL-- 360
            D  EK  R R D D ++      +R  RE+   R  D    KE+ R  RYD+  ++   
Sbjct: 301 PDVEEKSYRGRGDGDASYGRPKERERVDREDMGPRSRDAYDMKEQKRSGRYDNAYSRRHN 352

Query: 361 GDKNYKKEEKRSRRNHDDELPQHSRRDYN-RKEEDRSKRHGDEEYQPKLREDDNRR 398
            + +Y +E+K SR    ++    SRRD N R+E+DR            LR +D RR
Sbjct: 361 DEIDYVREDKGSRAQDWEKRKAESRRDRNDREEKDRD----------SLRREDRRR 352

The following BLAST results are available for this feature:

BLAST of Spg000857 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010507.1	2.0e-159	76.06	Zinc finger CCCH domain-containing protein 42, partial [Cucurbita argyrosperma s...	[more]
XP_023512686.1	7.7e-159	75.72	zinc finger CCCH domain-containing protein 25 [Cucurbita pepo subsp. pepo]	[more]
XP_022944591.1	2.2e-158	75.72	zinc finger CCCH domain-containing protein 25 [Cucurbita moschata]	[more]
KAG6570659.1	2.2e-158	75.50	Zinc finger CCCH domain-containing protein 42, partial [Cucurbita argyrosperma s...	[more]
XP_038902704.1	7.2e-157	73.99	zinc finger CCCH domain-containing protein 25-like [Benincasa hispida]	[more]

BLAST of Spg000857 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD61	6.5e-68	46.88	Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q10B98	3.2e-67	47.78	Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica OX...	[more]
B0BN49	7.5e-24	30.24	RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus OX=10116 GN=Rbmx2 PE=...	[more]
Q9Y388	1.7e-23	29.09	RNA-binding motif protein, X-linked 2 OS=Homo sapiens OX=9606 GN=RBMX2 PE=1 SV=2	[more]
Q8R0F5	6.4e-23	29.63	RNA-binding motif protein, X-linked 2 OS=Mus musculus OX=10090 GN=Rbmx2 PE=1 SV=...	[more]

BLAST of Spg000857 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUU2	1.1e-158	75.72	zinc finger CCCH domain-containing protein 25 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JFA2	3.9e-156	74.83	zinc finger CCCH domain-containing protein 25 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A5D3BDJ8	2.0e-152	69.64	Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo va...	[more]
A0A0A0KZW7	1.6e-149	71.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308540 PE=4 SV=1	[more]
A0A5A7TUW9	5.0e-148	70.82	Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo va...	[more]

BLAST of Spg000857 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47120.1	4.6e-69	46.88	RNA recognition motif (RRM)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 169..189
None	No IPR available	GENE3D	4.10.1000.10		coord: 176..253 e-value: 2.1E-7 score: 32.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..451
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..451
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..58
None	No IPR available	PANTHER	PTHR45880	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..58 coord: 105..339
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 105..339
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 37..164 e-value: 3.4E-12 score: 56.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 106..141 e-value: 2.9E-8 score: 33.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 36..168 score: 15.76675
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 186..210 e-value: 0.001 score: 28.3
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 189..209 e-value: 9.2E-5 score: 22.3
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 184..211 score: 14.802481
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 23..175 e-value: 7.8E-19 score: 69.8
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 187..209
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 32..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000857.1	Spg000857.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005686	U2 snRNP
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding