Spg000738 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000738
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	histone H4
Location	scaffold8: 44585307 .. 44588014 (+)
RNA-Seq Expression	Spg000738
Synteny	Spg000738

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGCCGTGGAAAGGGAGGCAAGGGCCTGGGAAAGGGCGGAGCAAAGCGTCACAGGAAGGTTTTGAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCTCGTAGAGGTGGCGTCAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGGGTTTTGAAGATTTTCCTCGAGAATGTGATTCGCGATGCTGTTACCTACACTGAGCACGCTAGGAGGAAGACGGTGACTGCCATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTATGGTTTTGGAGGTTAGGCTTAGGGTTGAATTTCACGAATGATTGTATATCTTGGATTTGGTTTTCTAGTCATTGATGTTTCTGTTAGTTGTACTTGGAAGTTGTTCACTGTTGTTCTGGCAATGAAATTCTAGTTCGTTGTGTATTCATTCTCTCTTGTTTCTTAATCTATTCTGTTCTTCGGAAGTTTACTGCTCTTTTTTTGTTGGATGGAGAGTTGAAATCGAAATTAGATTGCTCGTTGAATAGTTTTTATCGGCATAAAGAATGTCCGAACAGAGTGCTAACTTGTGATTCAATTGTTGCAATTCTGTAATCATTCAGTCTTAAGTTGATTTAAAATAAAATTTCATTCTGATAGGATGGGTTAGAGCTTGAAAGTGTAAAGAAGAAATGGAATGTCAGCTACATCGTACTGCATTAAGCTATCAAACATGTCTAAATAGCTATAAAGTAGCAATACCCCGAGTTTCTTAAACCAAATAGTTTGGTGACATTTGATAATTAGTACTACGTGCCTCTAGTATTTTTGCATTTACAGTTGAGTTATACTTGAATATGCATGTTCATCAAGGCATAAACAACATGAATAATCTAAGTTTGAATTGGAGAAACTTTGTAAAACCCCTGTTAAAAGCAGTCAGAATTCATCATGTATGAACTTAGAAATATGGTGATGCGGTAACCTGGCCTCTCCTGCAGAAGATTATCTAAATGGTTTACGACATTAGTTTTGACAAATCTTACAAGTTTTTTGAACCATCCATAAAAAATGAAAAGAAAAAGGAATAATCTGCAAGTAGGGAGGAAGTAGTATTCATTACTGAGGGGTGGTGGACGAGCAAATTCTTTAGACTTTGAGATCAATGAAATTGTAGAATAGTGTACATATCAATTCCAACCAGTTTGTAAATGGTATGTGAGAACACGATACCTTACATTAATGTATAATCTCAAACAAAGCTTAATTGGTGCTTCTCATTGAAAGGCATTTTTGAAGTATGCTATTTGGTTCTCAAAGTATAGGCATCCTGTTTCGTGGGTGAGGTCTTCAGGCTCTGCAGGTTCTTTGCTATGGTGCACGGATTCAGACATGGATTCCTTCCAAGGTGTCAAAAGGCGAGCAGGTCTATGCTGTGAACTTCTCATTGATCTTTTGAGATCATTTTTATCAATATTTTGTGAAACATGATCACCTAGCTTACTTACTAGGATTATGTATATCTGATCTCAAGCTCTTGATCATATGACCTTTATTTAATTTGTAACAGAAGTTAGCAAAATGGCCATTAACTTCTCTTCTTATTCTGATTCTCTCGATATGCTTTCTATCTCGATTTGTTGGTCTCATCACTCATCTTCACTTGTTCCTGTGTATTTGTCTGGTGTGTTTCCTGTTGATGGCTTGTTATAGAGCCATACCTGTTCTGTTGGGAAATTGGGATGCTGTACATGTATTCTACTCTTATCAATTGGACATGAAAAATATGGAGACTGGAGAGGCTGACTAATATTCAAATTAGTCCATCTTAAATCCTGATGTAAATTTTACGAACTGCTGTTTTAGTCTTATCTGTACTATAATTTTCTAGCATTACTCCTTCAAGCATGTGAATGATTCACTCTCCTGTTTCTTTAGTCGAGAATCAAGGTAGTAGGTAGTGCAGATATGATCATCTTATCTGGTAGATAAGATAATCAATGTGATTCCATTTCTCTACATGCATCGTCTCTAGGATGATTCATGTTTTTCCTGATGTTGTCACTCGTCACGTCCATTGCTCGTTTTGTAGGTAGCAACTTTGCTTTCTGGTCGGACAGTATGGCGATGAACATTCATATGGTATCAATGATTCCCATTCATATTCTTGACTGCGCCCAGAAACGACCCTTCGAGAATTCTCCTATTGATAGCGAGGGATTGATATTGCATTAGATAGCACTGTCATGCTTATCATTTGGAACATCATCTTCGACTAACATTTTGTGACGACTTTGATGATGTTTCCTATGGGCTGCAGGTATAATCGGCTTTTCGACTTGCATCAATTAGGACTTAAAGGAGCACTCCTTGCTATGATGGGATTATGTAATGTATATGAATGGATCACTGATTATATTAGTAGTGGTTGTTCACATACTTGTGAAGGTGAACTCTCCAACTTTAAGTGGATGTAAAATCTGCAGTCCCACACTTAACTAGTTGGCTAGTGCAAGAAGATGCAGGGGATTCAATATGCAGTGAAGTGAGCTGGAGGCGAGGAAGGACGGTGAATGTGTAGGTATTCGACGTCGAAGCGTGGCGGATGTCGAGGCGCTTGCAGCTGGGTTCGAGGCATTGGTGTATTCCCATCGTTTGCTTGATAGTTTGGTCGACCAAATTTTTCAGAACTTGTCCAGCTTGTGGATTTAG

mRNA sequence

ATGTCTGGCCGTGGAAAGGGAGGCAAGGGCCTGGGAAAGGGCGGAGCAAAGCGTCACAGGAAGGTTTTGAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCTCGTAGAGGTGGCGTCAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGGGTTTTGAAGATTTTCCTCGAGAATGTGATTCGCGATGCTGTTACCTACACTGAGCACGCTAGGAGGAAGACGGTGACTGCCATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGCATCCTGTTTCGTGGGTGAGGTCTTCAGGCTCTGCAGGTTCTTTGCTATGGTGCACGGATTCAGACATGGATTCCTTCCAAGGTGTCAAAAGGCGAGCAGAAGTTAGCAAAATGGCCATTAACTTCTCTTCTTATTCTGATTCTCTCGATATGCTTTCTATCTCGATTTGTTGGTCTCATCACTCATCTTCACTTGTTCCTGTGTATTTGTCTGGTGTGTTTCCTGTTGATGGCTTGTATAATCGGCTTTTCGACTTGCATCAATTAGGACTTAAAGGAGCACTCCTTGCTATGATGGGATTATGTAATGTATATGAATGGATCACTGATTATATTAGTAGTGGTTGTTCACATACTTGTGAAGGTATTCGACGTCGAAGCGTGGCGGATGTCGAGGCGCTTGCAGCTGGGTTCGAGGCATTGGTGTATTCCCATCGTTTGCTTGATAGTTTGGTCGACCAAATTTTTCAGAACTTGTCCAGCTTGTGGATTTAG

Coding sequence (CDS)

ATGTCTGGCCGTGGAAAGGGAGGCAAGGGCCTGGGAAAGGGCGGAGCAAAGCGTCACAGGAAGGTTTTGAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCTCGTAGAGGTGGCGTCAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGGGTTTTGAAGATTTTCCTCGAGAATGTGATTCGCGATGCTGTTACCTACACTGAGCACGCTAGGAGGAAGACGGTGACTGCCATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGCATCCTGTTTCGTGGGTGAGGTCTTCAGGCTCTGCAGGTTCTTTGCTATGGTGCACGGATTCAGACATGGATTCCTTCCAAGGTGTCAAAAGGCGAGCAGAAGTTAGCAAAATGGCCATTAACTTCTCTTCTTATTCTGATTCTCTCGATATGCTTTCTATCTCGATTTGTTGGTCTCATCACTCATCTTCACTTGTTCCTGTGTATTTGTCTGGTGTGTTTCCTGTTGATGGCTTGTATAATCGGCTTTTCGACTTGCATCAATTAGGACTTAAAGGAGCACTCCTTGCTATGATGGGATTATGTAATGTATATGAATGGATCACTGATTATATTAGTAGTGGTTGTTCACATACTTGTGAAGGTATTCGACGTCGAAGCGTGGCGGATGTCGAGGCGCTTGCAGCTGGGTTCGAGGCATTGGTGTATTCCCATCGTTTGCTTGATAGTTTGGTCGACCAAATTTTTCAGAACTTGTCCAGCTTGTGGATTTAG

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLHPVSWVRSSGSAGSLLWCTDSDMDSFQGVKRRAEVSKMAINFSSYSDSLDMLSISICWSHHSSSLVPVYLSGVFPVDGLYNRLFDLHQLGLKGALLAMMGLCNVYEWITDYISSGCSHTCEGIRRRSVADVEALAAGFEALVYSHRLLDSLVDQIFQNLSSLWI

Homology

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BLAST of Spg000738 vs. NCBI nr
Match: KAG6570719.1 (hypothetical protein SDJN03_29634, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-50
Identity = 113/133 (84.96%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLHPVSWVRSSGSAGSLLWCTDSD 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+        G AG LLW  DSD
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF-----GGFAGCLLWSMDSD 120

Query: 121 MDSFQGVKRRAEV 134
           +DSF G +R A +
Sbjct: 121 VDSFAGDRRWARI 128

[Close]

BLAST of Spg000738 vs. NCBI nr
Match: KAG7010565.1 (hypothetical protein SDJN02_27359, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-50
Identity = 113/133 (84.96%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLHPVSWVRSSGSAGSLLWCTDSD 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+        G AG LLW  DSD
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF-----GGFAGCLLWSMDSD 120

Query: 121 MDSFQGVKRRAEV 134
           +DSF G +R A +
Sbjct: 121 VDSFAGDRRWARI 128

[Close]

BLAST of Spg000738 vs. NCBI nr
Match: RVW65980.1 (Histone H4 [Vitis vinifera] >RVX23003.1 Histone H4 [Vitis vinifera])

HSP 1 Score: 193.7 bits (491), Expect = 1.9e-45
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLHPVSW 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH   W
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLHQTWW 103

[Close]

BLAST of Spg000738 vs. NCBI nr
Match: XP_020162652.2 (histone H4 [Aegilops tauschii subsp. strangulata])

HSP 1 Score: 193.0 bits (489), Expect = 3.3e-45
Identity = 102/111 (91.89%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLHPVSWVRSSGSAG 112
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+     R  GS G
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGARFLGSVG 111

[Close]

BLAST of Spg000738 vs. NCBI nr
Match: XP_041569802.1 (uncharacterized protein LOC105758485 [Taeniopygia guttata])

HSP 1 Score: 192.6 bits (488), Expect = 4.3e-45
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLHPVSWVRSSGSAGSL 114
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTL+    ++ +G +G+L
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGGLQRAGDSGAL 113

[Close]

BLAST of Spg000738 vs. ExPASy Swiss-Prot
Match: P62785 (Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2)

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-46
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH 100
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of Spg000738 vs. ExPASy Swiss-Prot
Match: P59259 (Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-46
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH 100
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of Spg000738 vs. ExPASy Swiss-Prot
Match: Q6PMI5 (Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3)

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-46
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH 100
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of Spg000738 vs. ExPASy Swiss-Prot
Match: Q6WZ83 (Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3)

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-46
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH 100
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of Spg000738 vs. ExPASy Swiss-Prot
Match: Q6LAF3 (Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3)

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-46
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH 100
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of Spg000738 vs. ExPASy TrEMBL
Match: A0A438KP75 (Histone H4 OS=Vitis vinifera OX=29760 GN=H4_2 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 9.4e-46
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLHPVSW 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH   W
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLHQTWW 103

[Close]

BLAST of Spg000738 vs. ExPASy TrEMBL
Match: A0A453CKJ2 (Histone H4 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-45
Identity = 102/111 (91.89%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLHPVSWVRSSGSAG 112
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+     R  GS G
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGARFLGSVG 111

[Close]

BLAST of Spg000738 vs. ExPASy TrEMBL
Match: A0A7J6H3M1 (Histone H4 OS=Cannabis sativa OX=3483 GN=F8388_009960 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.7e-45
Identity = 117/171 (68.42%), Postives = 126/171 (73.68%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH-------------PVSWVRSS 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+             P   +RSS
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVSTVNINGKGPRESLRSS 120

Query: 121 GSAGSLLW--CTDSDMDSFQGVKRRAEVSKMAINFSSYSDSLDMLSISICW 157
            ++ S  W  C    MD  Q    R  + K+  +  S S SLDM  + + W
Sbjct: 121 DASHS-AWSLCESLGMDHAQ--VTRCSMLKITRHAPS-SRSLDMQKVQVTW 167

[Close]

BLAST of Spg000738 vs. ExPASy TrEMBL
Match: A0A7J6ELM7 (Histone H4 OS=Cannabis sativa OX=3483 GN=G4B88_024258 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.7e-45
Identity = 117/171 (68.42%), Postives = 127/171 (74.27%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH-------------PVSWVRSS 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+             P   +RSS
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVSTVNINGKGPRESLRSS 120

Query: 121 GSAGSLLW--CTDSDMDSFQGVKRRAEVSKMAINFSSYSDSLDMLSISICW 157
            ++ S  W  C    MD  Q    R  + K+  +  S S SLDM ++ + W
Sbjct: 121 DASHS-AWSLCESLGMDHAQ--VTRCSMLKITWHAPS-SRSLDMHNVQVTW 167

[Close]

BLAST of Spg000738 vs. ExPASy TrEMBL
Match: A0A4Y7KZ51 (Multifunctional fusion protein OS=Papaver somniferum OX=3469 GN=C5167_001504 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.6e-45
Identity = 115/175 (65.71%), Postives = 125/175 (71.43%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLHPVSWVRSSGSAGSLLWCTDSD 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+       + +A S        
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGTAVTLNAQSKFPTNVRS 120

Query: 121 MDSFQGVKRRAEVSKMAINFSSYSDSLDMLSISICWSHHSSSLVPVYLSGVFPVD 176
             +   V R+    K A + +S     D +     +S  S    P YL+G FP D
Sbjct: 121 SSNGMIVMRKTSAKKPAASSASPWYGPDRVKYLGPFSGES----PSYLTGEFPGD 171

[Close]

BLAST of Spg000738 vs. TAIR 10
Match: AT1G07660.1 (Histone superfamily protein )

HSP 1 Score: 188.3 bits (477), Expect = 7.6e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH 100
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of Spg000738 vs. TAIR 10
Match: AT1G07820.1 (Histone superfamily protein )

HSP 1 Score: 188.3 bits (477), Expect = 7.6e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH 100
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of Spg000738 vs. TAIR 10
Match: AT1G07820.2 (Histone superfamily protein )

HSP 1 Score: 188.3 bits (477), Expect = 7.6e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH 100
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of Spg000738 vs. TAIR 10
Match: AT2G28740.1 (histone H4 )

HSP 1 Score: 188.3 bits (477), Expect = 7.6e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH 100
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of Spg000738 vs. TAIR 10
Match: AT3G45930.1 (Histone superfamily protein )

HSP 1 Score: 188.3 bits (477), Expect = 7.6e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLH 100
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

The following BLAST results are available for this feature:

BLAST of Spg000738 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570719.1	1.2e-50	84.96	hypothetical protein SDJN03_29634, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7010565.1	1.2e-50	84.96	hypothetical protein SDJN02_27359, partial [Cucurbita argyrosperma subsp. argyro...	[more]
RVW65980.1	1.9e-45	97.09	Histone H4 [Vitis vinifera] >RVX23003.1 Histone H4 [Vitis vinifera]	[more]
XP_020162652.2	3.3e-45	91.89	histone H4 [Aegilops tauschii subsp. strangulata]	[more]
XP_041569802.1	4.3e-45	87.61	uncharacterized protein LOC105758485 [Taeniopygia guttata]	[more]

BLAST of Spg000738 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62785	1.1e-46	98.99	Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2	[more]
P59259	1.1e-46	98.99	Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2	[more]
Q6PMI5	1.1e-46	98.99	Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3	[more]
Q6WZ83	1.1e-46	98.99	Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3	[more]
Q6LAF3	1.1e-46	98.99	Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3	[more]

BLAST of Spg000738 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438KP75	9.4e-46	97.09	Histone H4 OS=Vitis vinifera OX=29760 GN=H4_2 PE=3 SV=1	[more]
A0A453CKJ2	1.6e-45	91.89	Histone H4 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1	[more]
A0A7J6H3M1	2.7e-45	68.42	Histone H4 OS=Cannabis sativa OX=3483 GN=F8388_009960 PE=3 SV=1	[more]
A0A7J6ELM7	2.7e-45	68.42	Histone H4 OS=Cannabis sativa OX=3483 GN=G4B88_024258 PE=3 SV=1	[more]
A0A4Y7KZ51	3.6e-45	65.71	Multifunctional fusion protein OS=Papaver somniferum OX=3469 GN=C5167_001504 PE=...	[more]

BLAST of Spg000738 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07660.1	7.6e-48	98.99	Histone superfamily protein	[more]
AT1G07820.1	7.6e-48	98.99	Histone superfamily protein	[more]
AT1G07820.2	7.6e-48	98.99	Histone superfamily protein	[more]
AT2G28740.1	7.6e-48	98.99	histone H4	[more]
AT3G45930.1	7.6e-48	98.99	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 62..76 score: 95.1 coord: 20..39 score: 93.38 coord: 5..16 score: 95.59 coord: 40..60 score: 93.56 coord: 77..89 score: 90.05 coord: 89..100 score: 81.13
IPR001951	Histone H4	SMART	SM00417	h44	coord: 16..90 e-value: 2.0E-29 score: 113.7
IPR001951	Histone H4	CDD	cd00076	H4	coord: 18..99 e-value: 3.73757E-49 score: 155.352
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..102 e-value: 1.1E-54 score: 184.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 3..98
IPR035425	CENP-T/Histone H4, histone fold	PFAM	PF15511	CENP-T_C	coord: 39..97 e-value: 1.0E-7 score: 32.0
None	No IPR available	PANTHER	PTHR10484:SF185	HISTONE H4	coord: 1..99
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 1..99
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 15..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000738.1	Spg000738.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0009521	photosystem
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0046982	protein heterodimerization activity