Spg000711 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg000711
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold8: 38837566 .. 38838288 (-)
RNA-Seq ExpressionSpg000711
SyntenySpg000711
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCCAACTCCGGCTCGACTAGTGAGATCAACGGTTGGTTTTATACCAACTACTGAACTAAAACTAGGACATAATATTGAACCATCAGTTTCAGTTCCTAGTGTGATAGCAGCCATGTTTGCTGACACTGATATTGCAGAGCCACTATACTTGAACCACAAGGAGCTTCCAATTTATAAGGTTCCTGTGCCATTTTTATCCAATTTTGTATAGTTGGATTCTAGTTCATTTGTACTAATCCGCTCGCTTACACTATAACTCTTACTCATGGATGATTGGGTTGAACCAAAAACTTAAAAGGAAATTTGAGCATGTAAAGATTTTTTATTTAGTGAAAAAAAAAGCAAGCAGAATTTTGGAGGAGTTGGAGGTTAACTCACCCGACCTTGTCCCAACCTAGTGTTCCAACCAGGGGGAGCTTTGTGGGACCTAAAACTAGACCACTCGCTTAGGCTAGCCTTTCCCAATATAATTGCTCCAGCTTTCCTCAACTTCGTCACCACTCCTGCATCACGAGGCACGATAGAGCCCGATAGAGCAAATGAGCCAGCCGTTGTGTTGAGCTTGTCCTTTGTTGCTATATTGTCTTTAACAAGCACAGGAATACCGTGCAAAAGAGGCAGTGAACCTATTGCCTTCCCTTGGCGCTCACGATCTGCCTTGTCTGCTAAGTACAACGCATCTGGATTCACTTCTATGACCCTTCTATGTCTACTCTAG

mRNA sequence

ATGGGGCCAACTCCGGCTCGACTAGTGAGATCAACGGTTGGTTTTATACCAACTACTGAACTAAAACTAGGACATAATATTGAACCATCAGTTTCAGTTCCTAGTGTGATAGCAGCCATGTTTGCTGACACTGATATTGCAGAGCCACTATACTTGAACCACAAGGAGCTTCCAATTTATAAGGTTCCTGTGCCATTTTTATCCAATTTTGTATAG

Coding sequence (CDS)

ATGGGGCCAACTCCGGCTCGACTAGTGAGATCAACGGTTGGTTTTATACCAACTACTGAACTAAAACTAGGACATAATATTGAACCATCAGTTTCAGTTCCTAGTGTGATAGCAGCCATGTTTGCTGACACTGATATTGCAGAGCCACTATACTTGAACCACAAGGAGCTTCCAATTTATAAGGTTCCTGTGCCATTTTTATCCAATTTTGTATAG

Protein sequence

MGPTPARLVRSTVGFIPTTELKLGHNIEPSVSVPSVIAAMFADTDIAEPLYLNHKELPIYKVPVPFLSNFV
Homology
BLAST of Spg000711 vs. NCBI nr
Match: MCI18393.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 67.0 bits (162), Expect = 7.4e-08
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 1  MGPTPARLVRSTVGFIPTTELKL-GHNIEPSVSVPSVIAAMFADTDIAEPLYLNH 55
          +G TPA LVR TVG +PTTELKL GH +EPSVSVPS     FA TDIA+PL   H
Sbjct: 11 IGTTPALLVRPTVGLMPTTELKLEGHKMEPSVSVPSDTVTKFAATDIADPLLEPH 65

BLAST of Spg000711 vs. NCBI nr
Match: KAG5578352.1 (hypothetical protein H5410_058486 [Solanum commersonii])

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 1  MGPTPARLVRSTVGFIPTTELKL-GHNIEPSVSVPSVIAAMFADTDIAEPLYLNH 55
          +G TPA LVR TVG IPTTEL L G  +EP+VSVP+  AAMFA TD+AEP+   H
Sbjct: 25 IGITPALLVRPTVGLIPTTELALDGDRMEPAVSVPNATAAMFAATDVAEPVLDPH 79

BLAST of Spg000711 vs. NCBI nr
Match: KAB8094899.1 (hypothetical protein EE612_022344, partial [Oryza sativa])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 1   MGPTPARLVRSTVGFIPTTEL-KLGHNIEPSVSVPSVIAAMFADTDIAEPLYLNH 55
           +G TPARLVR TVG IPTTE    G  I+PSVSVPSV AAMFA    AEPL   H
Sbjct: 105 IGMTPARLVRPTVGLIPTTEFHDAGQIIDPSVSVPSVTAAMFAAAATAEPLLDQH 159

BLAST of Spg000711 vs. NCBI nr
Match: KAF7837068.1 (Uncharacterized protein G2W53_005550 [Senna tora])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1   MGPTPARLVRSTVGFIPTTELKL-GHNIEPSVSVPSVIAAMFADTDIAEPLYLNHKELPI 60
           +G TP+ LVR TVG +PT ELK  GH +EPSVSVP  I  +FA TDIA+PL L+ + +PI
Sbjct: 76  IGITPSLLVRPTVGLMPTKELKWEGHKMEPSVSVPREIVTIFAATDIADPL-LDPQGVPI 135

Query: 61  Y----KVPVPFLSNFV 72
                K+  P L N V
Sbjct: 136 VVAFPKMIAPALVNLV 150

BLAST of Spg000711 vs. NCBI nr
Match: BAS87991.1 (Os04g0184450, partial [Oryza sativa Japonica Group])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 1   MGPTPARLVRSTVGFIPTTEL-KLGHNIEPSVSVPSVIAAMFADTDIAEPLYLNH 55
           +G TPARLVR TVG IPTTE    G  I+PSVSVPSV AAMFA    AEPL   H
Sbjct: 105 IGMTPARLVRPTVGLIPTTEFHDAGQIIDPSVSVPSVTAAMFAAAATAEPLLDQH 159

BLAST of Spg000711 vs. ExPASy TrEMBL
Match: A0A392Q1W0 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 1  MGPTPARLVRSTVGFIPTTELKL-GHNIEPSVSVPSVIAAMFADTDIAEPLYLNH 55
          +G TPA LVR TVG +PTTELKL GH +EPSVSVPS     FA TDIA+PL   H
Sbjct: 11 IGTTPALLVRPTVGLMPTTELKLEGHKMEPSVSVPSDTVTKFAATDIADPLLEPH 65

BLAST of Spg000711 vs. ExPASy TrEMBL
Match: A0A0P0W758 (Os04g0184450 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0184450 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.2e-07
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 1   MGPTPARLVRSTVGFIPTTEL-KLGHNIEPSVSVPSVIAAMFADTDIAEPLYLNH 55
           +G TPARLVR TVG IPTTE    G  I+PSVSVPSV AAMFA    AEPL   H
Sbjct: 105 IGMTPARLVRPTVGLIPTTEFHDAGQIIDPSVSVPSVTAAMFAAAATAEPLLDQH 159

BLAST of Spg000711 vs. ExPASy TrEMBL
Match: J3LVT1 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-06
Identity = 35/55 (63.64%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 1  MGPTPARLVRSTVGFIPTTE-LKLGHNIEPSVSVPSVIAAMFADTDIAEPLYLNH 55
          MG TPARLV  TVG IPTTE    G +I+PSVSVPSV AAMFA    A+PL   H
Sbjct: 8  MGMTPARLVSPTVGLIPTTEFFDAGQSIDPSVSVPSVTAAMFAAAASADPLLDPH 62

BLAST of Spg000711 vs. ExPASy TrEMBL
Match: A0A0P0W6Y7 (Os04g0183401 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0183401 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 35/55 (63.64%), Postives = 37/55 (67.27%), Query Frame = 0

Query: 1  MGPTPARLVRSTVGFIPTTELK-LGHNIEPSVSVPSVIAAMFADTDIAEPLYLNH 55
          MG TPARLV  TVG IPTTE    G +I+PSVSVPSV AAMFA    A PL   H
Sbjct: 21 MGMTPARLVSPTVGLIPTTEFSDAGQSIDPSVSVPSVTAAMFAAAATAGPLLDPH 75

BLAST of Spg000711 vs. ExPASy TrEMBL
Match: M8BH00 (Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_42978 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.8e-06
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 1  MGPTPARLVRSTVGFIPTTELK-LGHNIEPSVSVPSVIAAMFADTDIAEP 50
          MG TPARLV  TVG IPTTE    G ++EPS+ VPSV A MFA   IAEP
Sbjct: 1  MGMTPARLVNPTVGLIPTTEFSDAGQSMEPSLFVPSVTATMFAAAAIAEP 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MCI18393.17.4e-0865.45hypothetical protein [Trifolium medium][more]
KAG5578352.12.8e-0763.64hypothetical protein H5410_058486 [Solanum commersonii][more]
KAB8094899.11.1e-0665.45hypothetical protein EE612_022344, partial [Oryza sativa][more]
KAF7837068.11.1e-0652.63Uncharacterized protein G2W53_005550 [Senna tora][more]
BAS87991.11.1e-0665.45Os04g0184450, partial [Oryza sativa Japonica Group][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A392Q1W03.6e-0865.45Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1[more]
A0A0P0W7585.2e-0765.45Os04g0184450 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os04... [more]
J3LVT11.5e-0663.64Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1[more]
A0A0P0W6Y72.6e-0663.64Os04g0183401 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os04... [more]
M8BH009.8e-0664.00Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_42978 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg000711.1Spg000711.1mRNA