Spg000705 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000705
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	50S ribosomal protein L4
Location	scaffold8: 44128331 .. 44130330 (+)
RNA-Seq Expression	Spg000705
Synteny	Spg000705

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCGCCACGACGCCATCGTCACTCTCCTTCTTCACTTCATCGGTCTTCCTTTCCTCCGCCAACCAAAACTCCAAGCTCTTCTGCAATTGGAAACCTAATTCCCTGAAACCCCAATCCAAGCCCTTATCCATCTCCTCCCAGCTCGCAACTCTTCCAGTCCTTTCCTTCGCCGGAGAAAAAGTCGGCGAGACCTACCTCGACCTGAAGTCCGCTCCACCGGAGACCGCCCGCGCCGTCGTTCATCGAGCCATTATCACAGACCAACAGAACAAGCGCCGTGGTACCGCCTCGACTCTCACCAGAGCTGAGGTCAGTGGAGGCGGCAAAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCCCGCCGCGGTTCGATGCGTACTCCTCTCCGGCCCGGCGGAGGTGTGGTTTTCGGGCCGAAACCTAGGGATTGGTCCATTAAGATCAACAGAAAGGAGAAGAGATTGGCAATATCGACGGCGGTGGCTAGCGCGGCGGTAAATACGATAGTGGTGGAGGATTTCGGTGACAAATTCGAGAAGCCGAAAACTAAAGAGTTCATTTCTGCGCTGAAGAGATGGGGAATCGATCCTAAGGAGAAATCGTTGTTCTTAATGACCGAGGTTTCGGATAATGTGCGACTATCTAGCCGCAATATCGGAACGTTGAAGATGTTGACGCCGAGGACGCTGAATTTGTTCGACATTTTGAATTCCGATAAGTTGGTTTTGACGCCGGCGGCGGTAGATTATCTGAATGAGAGATATGGAATTAATTACGAAGAAGGTATCGAAAACGAGGAAGAAGAAGAAGAAGAAGGTGGAGAAGGCGAAGAAGGTTGATTTTCTTGTCTTTCTCTAATTCAATTATTCAATTAAAGAAATGATACACTTCTTTAAGAACTTACAATGCCGTTGCATACTTCAGTTTTGCCTAGTTGCATCAAATCACATTACAGGGCCTTCTTCTTCTTGATTTCTTGATTTCTTGATTTCTTTATTTCTTCGATACCCTTTTATGATGAGCCTGCCTTAGAATTATGCTATGAATTCTGGTTCTGTTTCTGTTAACATTGCAAGTGCTGTTATAGCCAATAGTCTGTTTGCAAATGGGTTATGCATTGTCATGTTTGTAAAATCGATTTACTCAGGCATGTTTGGAAGTGATTTTGAATTGTCAAAATCACTCTTCTCATGTTTAAATTCACTCCCAGGCATGCATTTGATCATTTTGATTCTTGGTTTACACCTTAAAATGTGATTTTCATACCATCAAAATTGATTTTGAATGATTAAAAGCATGTTTGGTGTTTCAAAATCACTCCCAAACATTCCCTTACATTTTTCATTTTTATAACATCGTTCTTTCTTGTTGCTGCTTCCATTGTCTCACATAAATCACACAACACAGATACTGAAGTTCAGAGAGGGAGAGAGAGATTGTAATTCTTCCACCATTAATGTCTTCTTGTTTGCTTCTTCCACCGTTTCACATCAAATGCACAACACAAACATACTAAAGTTCATAGAGAGAGAGAGAGATTGTGATTCTTCCATTAATGTCTTCTTCACTTTTGGAAACAGGGCTGGAGGCAGGTGAGGATTCGGATGCTGCTGAATGATTCTGCCATTTGCAAATCGTGACAGAAGCTTTCAGTATGTTAACTTGCAGGCTTGAACGGAATCTTTTTTGTTCTTGTACACACAAAGGTATCTCCTTGTTCTCTTTTCCTCATATATCCTAAAGTGTTGTTTGTAGTTGATCTCTTCAAGAATAATCTTTTATTCTTTCGGAATTTGCATTCTGTTATGGCTTCCCTGCACTTTCTTCCTAAGTTAGGAGCTTCCACATTAGTATTTCACGTCCCCATGGCAGTTCCTTTTTCGATAACATGCGGAAATGTTCAAAGAAAAAGAGAACAAACTTTTAGAAGATCATCTTTAAATTAAAATGTTTTGCGTTCCTTAAAAATTAATGTTGTAGTAGAATTTTGACC

mRNA sequence

ATGGCGACCGCCACGACGCCATCGTCACTCTCCTTCTTCACTTCATCGGTCTTCCTTTCCTCCGCCAACCAAAACTCCAAGCTCTTCTGCAATTGGAAACCTAATTCCCTGAAACCCCAATCCAAGCCCTTATCCATCTCCTCCCAGCTCGCAACTCTTCCAGTCCTTTCCTTCGCCGGAGAAAAAGTCGGCGAGACCTACCTCGACCTGAAGTCCGCTCCACCGGAGACCGCCCGCGCCGTCGTTCATCGAGCCATTATCACAGACCAACAGAACAAGCGCCGTGGTACCGCCTCGACTCTCACCAGAGCTGAGGTCAGTGGAGGCGGCAAAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCCCGCCGCGGTTCGATGCGTACTCCTCTCCGGCCCGGCGGAGGTGTGGTTTTCGGGCCGAAACCTAGGGATTGGTCCATTAAGATCAACAGAAAGGAGAAGAGATTGGCAATATCGACGGCGGTGGCTAGCGCGGCGGTAAATACGATAGTGGTGGAGGATTTCGGTGACAAATTCGAGAAGCCGAAAACTAAAGAGTTCATTTCTGCGCTGAAGAGATGGGGAATCGATCCTAAGGAGAAATCGTTGTTCTTAATGACCGAGGTTTCGGATAATGTGCGACTATCTAGCCGCAATATCGGAACGTTGAAGATGTTGACGCCGAGGACGCTGAATTTGTTCGACATTTTGAATTCCGATAAGTTGAATTATGCTATGAATTCTGGTTCTGTTTCTGTTAACATTGCAAGTGCTGTTATAGCCAATAGTCTGTTTGCAAATGGGTTATGCATTGTCATGTTTGTAAAATCGATTTACTCAGGCATGTTTGGAAGGCTGGAGGCAGGTGAGGATTCGGATGCTGCTGAATGA

Coding sequence (CDS)

ATGGCGACCGCCACGACGCCATCGTCACTCTCCTTCTTCACTTCATCGGTCTTCCTTTCCTCCGCCAACCAAAACTCCAAGCTCTTCTGCAATTGGAAACCTAATTCCCTGAAACCCCAATCCAAGCCCTTATCCATCTCCTCCCAGCTCGCAACTCTTCCAGTCCTTTCCTTCGCCGGAGAAAAAGTCGGCGAGACCTACCTCGACCTGAAGTCCGCTCCACCGGAGACCGCCCGCGCCGTCGTTCATCGAGCCATTATCACAGACCAACAGAACAAGCGCCGTGGTACCGCCTCGACTCTCACCAGAGCTGAGGTCAGTGGAGGCGGCAAAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCCCGCCGCGGTTCGATGCGTACTCCTCTCCGGCCCGGCGGAGGTGTGGTTTTCGGGCCGAAACCTAGGGATTGGTCCATTAAGATCAACAGAAAGGAGAAGAGATTGGCAATATCGACGGCGGTGGCTAGCGCGGCGGTAAATACGATAGTGGTGGAGGATTTCGGTGACAAATTCGAGAAGCCGAAAACTAAAGAGTTCATTTCTGCGCTGAAGAGATGGGGAATCGATCCTAAGGAGAAATCGTTGTTCTTAATGACCGAGGTTTCGGATAATGTGCGACTATCTAGCCGCAATATCGGAACGTTGAAGATGTTGACGCCGAGGACGCTGAATTTGTTCGACATTTTGAATTCCGATAAGTTGAATTATGCTATGAATTCTGGTTCTGTTTCTGTTAACATTGCAAGTGCTGTTATAGCCAATAGTCTGTTTGCAAATGGGTTATGCATTGTCATGTTTGTAAAATCGATTTACTCAGGCATGTTTGGAAGGCTGGAGGCAGGTGAGGATTCGGATGCTGCTGAATGA

Protein sequence

MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNSDKLNYAMNSGSVSVNIASAVIANSLFANGLCIVMFVKSIYSGMFGRLEAGEDSDAAE

Homology

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BLAST of Spg000705 vs. NCBI nr
Match: XP_022148353.1 (50S ribosomal protein L4, chloroplastic [Momordica charantia])

HSP 1 Score: 456.4 bits (1173), Expect = 1.8e-124
Identity = 236/243 (97.12%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MAT+TTPSSLSFFTSSVFLSSANQNSKLFC+WKPNSLKPQ+KPLSISSQLATLPVLSFAG
Sbjct: 1   MATSTTPSSLSFFTSSVFLSSANQNSKLFCHWKPNSLKPQTKPLSISSQLATLPVLSFAG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG
Sbjct: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDIL+S
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILDS 240

Query: 241 DKL 244
           DK+
Sbjct: 241 DKM 243

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BLAST of Spg000705 vs. NCBI nr
Match: XP_023532270.1 (50S ribosomal protein L4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 451.1 bits (1159), Expect = 7.6e-123
Identity = 233/243 (95.88%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +TTPSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTTPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKL 244
           DKL
Sbjct: 241 DKL 243

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BLAST of Spg000705 vs. NCBI nr
Match: XP_023007555.1 (50S ribosomal protein L4, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 449.1 bits (1154), Expect = 2.9e-122
Identity = 232/243 (95.47%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +TTPSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTTPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEV GGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVRGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKL 244
           DKL
Sbjct: 241 DKL 243

[Close]

BLAST of Spg000705 vs. NCBI nr
Match: XP_022948154.1 (50S ribosomal protein L4, chloroplastic-like isoform X1 [Cucurbita moschata] >KAG6605425.1 50S ribosomal protein L4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035374.1 50S ribosomal protein L4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 449.1 bits (1154), Expect = 2.9e-122
Identity = 232/243 (95.47%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +T PSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTAPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKL 244
           DKL
Sbjct: 241 DKL 243

[Close]

BLAST of Spg000705 vs. NCBI nr
Match: XP_022948155.1 (50S ribosomal protein L4, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 449.1 bits (1154), Expect = 2.9e-122
Identity = 232/243 (95.47%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +T PSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTAPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKL 244
           DKL
Sbjct: 241 DKL 243

[Close]

BLAST of Spg000705 vs. ExPASy Swiss-Prot
Match: O50061 (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL4 PE=2 SV=2)

HSP 1 Score: 343.2 bits (879), Expect = 2.9e-93
Identity = 178/245 (72.65%), Postives = 211/245 (86.12%), Query Frame = 0


Query: 2   ATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGE 61
           ++AT P+SLSFF+SS+FLSS++Q  K + +         SKPLS+SSQLATLP+LSF GE
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGE 62

Query: 62  KVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGK 121
           KVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG 
Sbjct: 63  KVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGH 122

Query: 122 ARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFGD 181
           ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG+
Sbjct: 123 ARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGE 182

Query: 182 KFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDIL 241
           KFEKPKTK+F++A++RWG+DPKEK++FLM +V +NV  SSRNIGTL+MLTPRTLNLFDIL
Sbjct: 183 KFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDIL 242

Query: 242 NSDKL 244
           N+DKL
Sbjct: 243 NADKL 247

[Close]

BLAST of Spg000705 vs. ExPASy Swiss-Prot
Match: O80361 (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL4 PE=2 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 4.1e-87
Identity = 171/237 (72.15%), Postives = 203/237 (85.65%), Query Frame = 0


Query: 8   SSLSFFTSSVFLSSAN-QNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGEKVGET 67
           +SLSFF+SS+FLS+ N Q+SK      P  L   +   +I S++AT+P+LSF G +VG T
Sbjct: 3   ASLSFFSSSIFLSNPNIQSSKHLLFRSPKQLS-VAAIATIRSEVATIPILSFDGAEVGST 62

Query: 68  YLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGKARRGS 127
            L+LKSAP +TARAVVHR + TD +N+RRGTASTLTR+EV GGG KPY QKKTG+ARRGS
Sbjct: 63  TLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGS 122

Query: 128 MRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKPKTK 187
            RTPLRPGGGVVFGPKP+DWS+KIN+KEKRLAISTA++SA+ NTIVVE+F DKFEKPKTK
Sbjct: 123 NRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSASENTIVVEEFNDKFEKPKTK 182

Query: 188 EFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNSDKL 244
           EFI  ++RWG+DPKEKSLFLMT+VSDNV LSSRNIGTLKMLTPRTLNLFDIL+S+KL
Sbjct: 183 EFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKL 238

[Close]

BLAST of Spg000705 vs. ExPASy Swiss-Prot
Match: O49937 (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL4 PE=1 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.0e-82
Identity = 161/245 (65.71%), Postives = 202/245 (82.45%), Query Frame = 0


Query: 1   MATATTPS-SLSFFTSSVFLS-SANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSF 60
           MAT+T+ S SLSFF+SS+F S S N +SK       +S    S  LSI S+L  LP+L+F
Sbjct: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60

Query: 61  AGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKK 120
           +GEKVGET+L+LK+APPE ARAVVHR +IT  QNKRRGTASTLTRAEV GGG+KPY QKK
Sbjct: 61  SGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120

Query: 121 TGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD 180
           TG+ARRGS  +PLRPGGGV+FGPKPRDW+IK+N+KE+RLA+STA+ASA  N+ VVE+F +
Sbjct: 121 TGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180

Query: 181 KFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDIL 240
            FEKPKTK+FI+A++RWG+DP EKSLF + ++ +NV  S RNI TLK+LTPR+LNLFD+L
Sbjct: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240

Query: 241 NSDKL 244
           N++KL
Sbjct: 241 NAEKL 245

[Close]

BLAST of Spg000705 vs. ExPASy Swiss-Prot
Match: Q8DMN0 (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rplD PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.3e-52
Identity = 102/189 (53.97%), Postives = 141/189 (74.60%), Query Frame = 0


Query: 55  VLSFAGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPY 114
           V  + G   GE  LDL +A PETA  +VHRA++    N R+GT ST TRAEV GGG+KP+
Sbjct: 6   VKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPW 65

Query: 115 QQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE 174
           +QK TG+AR GS+R+PL  GGGV+FGPKPRD+S K+NRKE+RLA+ TA+ S   + IVV+
Sbjct: 66  RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALMSRVEDLIVVQ 125

Query: 175 DFGDKFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNL 234
           DF D   +PKTKE ++AL+RWGI+P++K L L  ++++ V LS+RN+ TLK+L    LN+
Sbjct: 126 DFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQLNV 185

Query: 235 FDILNSDKL 244
           FD+L +D++
Sbjct: 186 FDLLYADRI 194

[Close]

BLAST of Spg000705 vs. ExPASy Swiss-Prot
Match: B7K334 (50S ribosomal protein L4 OS=Rippkaea orientalis (strain PCC 8801) OX=41431 GN=rplD PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.1e-51
Identity = 98/189 (51.85%), Postives = 146/189 (77.25%), Query Frame = 0


Query: 55  VLSFAGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPY 114
           + ++ GE+VG+  L+LK A  E A  +VHRA++  Q N R+GTAST TRAEV GGG+KP+
Sbjct: 6   IKNWQGEEVGQATLELKVAKEENAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPW 65

Query: 115 QQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE 174
           +QK TG+AR GS+R+PL  GGGV FGPKP+D+++K+NRKE+RLA+ TA+ S   + IVVE
Sbjct: 66  RQKGTGRARAGSIRSPLWRGGGVTFGPKPKDFNVKMNRKERRLALRTALDSRIEDLIVVE 125

Query: 175 DFGDKFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNL 234
           +F ++  +PKTKE +SAL RWGID  +K + +++E++DN++LS+RN+  +K+L    LN+
Sbjct: 126 NFAEQLTQPKTKELVSALTRWGIDGNQKVVLIVSEITDNIQLSARNVPYIKLLKADGLNV 185

Query: 235 FDILNSDKL 244
           +D+L +DK+
Sbjct: 186 YDLLVADKI 194

[Close]

BLAST of Spg000705 vs. ExPASy TrEMBL
Match: A0A6J1D3V7 (50S ribosomal protein L4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017027 PE=3 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 8.8e-125
Identity = 236/243 (97.12%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MAT+TTPSSLSFFTSSVFLSSANQNSKLFC+WKPNSLKPQ+KPLSISSQLATLPVLSFAG
Sbjct: 1   MATSTTPSSLSFFTSSVFLSSANQNSKLFCHWKPNSLKPQTKPLSISSQLATLPVLSFAG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG
Sbjct: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDIL+S
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILDS 240

Query: 241 DKL 244
           DK+
Sbjct: 241 DKM 243

[Close]

BLAST of Spg000705 vs. ExPASy TrEMBL
Match: A0A6J1KZ16 (50S ribosomal protein L4, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111500015 PE=3 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.4e-122
Identity = 232/243 (95.47%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +TTPSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTTPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEV GGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVRGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKL 244
           DKL
Sbjct: 241 DKL 243

[Close]

BLAST of Spg000705 vs. ExPASy TrEMBL
Match: A0A6J1L3A5 (50S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111500015 PE=3 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.4e-122
Identity = 232/243 (95.47%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +TTPSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTTPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEV GGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVRGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKL 244
           DKL
Sbjct: 241 DKL 243

[Close]

BLAST of Spg000705 vs. ExPASy TrEMBL
Match: A0A6J1G8Y3 (50S ribosomal protein L4, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451819 PE=3 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.4e-122
Identity = 232/243 (95.47%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +T PSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTAPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKL 244
           DKL
Sbjct: 241 DKL 243

[Close]

BLAST of Spg000705 vs. ExPASy TrEMBL
Match: A0A6J1G917 (50S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451819 PE=3 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.4e-122
Identity = 232/243 (95.47%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +T PSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTAPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKL 244
           DKL
Sbjct: 241 DKL 243

[Close]

BLAST of Spg000705 vs. TAIR 10
Match: AT1G07320.1 (ribosomal protein L4 )

HSP 1 Score: 343.2 bits (879), Expect = 2.1e-94
Identity = 178/245 (72.65%), Postives = 211/245 (86.12%), Query Frame = 0


Query: 2   ATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGE 61
           ++AT P+SLSFF+SS+FLSS++Q  K + +         SKPLS+SSQLATLP+LSF GE
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGE 62

Query: 62  KVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGK 121
           KVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG 
Sbjct: 63  KVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGH 122

Query: 122 ARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFGD 181
           ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG+
Sbjct: 123 ARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGE 182

Query: 182 KFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDIL 241
           KFEKPKTK+F++A++RWG+DPKEK++FLM +V +NV  SSRNIGTL+MLTPRTLNLFDIL
Sbjct: 183 KFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDIL 242

Query: 242 NSDKL 244
           N+DKL
Sbjct: 243 NADKL 247

[Close]

BLAST of Spg000705 vs. TAIR 10
Match: AT1G07320.2 (ribosomal protein L4 )

HSP 1 Score: 343.2 bits (879), Expect = 2.1e-94
Identity = 178/245 (72.65%), Postives = 211/245 (86.12%), Query Frame = 0


Query: 2   ATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGE 61
           ++AT P+SLSFF+SS+FLSS++Q  K + +         SKPLS+SSQLATLP+LSF GE
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGE 62

Query: 62  KVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGK 121
           KVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG 
Sbjct: 63  KVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGH 122

Query: 122 ARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFGD 181
           ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG+
Sbjct: 123 ARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGE 182

Query: 182 KFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDIL 241
           KFEKPKTK+F++A++RWG+DPKEK++FLM +V +NV  SSRNIGTL+MLTPRTLNLFDIL
Sbjct: 183 KFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDIL 242

Query: 242 NSDKL 244
           N+DKL
Sbjct: 243 NADKL 247

[Close]

BLAST of Spg000705 vs. TAIR 10
Match: AT1G07320.3 (ribosomal protein L4 )

HSP 1 Score: 343.2 bits (879), Expect = 2.1e-94
Identity = 178/245 (72.65%), Postives = 211/245 (86.12%), Query Frame = 0


Query: 2   ATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGE 61
           ++AT P+SLSFF+SS+FLSS++Q  K + +         SKPLS+SSQLATLP+LSF GE
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGE 62

Query: 62  KVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGK 121
           KVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG 
Sbjct: 63  KVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGH 122

Query: 122 ARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFGD 181
           ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG+
Sbjct: 123 ARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGE 182

Query: 182 KFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDIL 241
           KFEKPKTK+F++A++RWG+DPKEK++FLM +V +NV  SSRNIGTL+MLTPRTLNLFDIL
Sbjct: 183 KFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDIL 242

Query: 242 NSDKL 244
           N+DKL
Sbjct: 243 NADKL 247

[Close]

BLAST of Spg000705 vs. TAIR 10
Match: AT1G07320.4 (ribosomal protein L4 )

HSP 1 Score: 343.2 bits (879), Expect = 2.1e-94
Identity = 178/245 (72.65%), Postives = 211/245 (86.12%), Query Frame = 0


Query: 2   ATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGE 61
           ++AT P+SLSFF+SS+FLSS++Q  K + +         SKPLS+SSQLATLP+LSF GE
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGE 62

Query: 62  KVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGK 121
           KVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG 
Sbjct: 63  KVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGH 122

Query: 122 ARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFGD 181
           ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG+
Sbjct: 123 ARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGE 182

Query: 182 KFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDIL 241
           KFEKPKTK+F++A++RWG+DPKEK++FLM +V +NV  SSRNIGTL+MLTPRTLNLFDIL
Sbjct: 183 KFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDIL 242

Query: 242 NSDKL 244
           N+DKL
Sbjct: 243 NADKL 247

[Close]

BLAST of Spg000705 vs. TAIR 10
Match: AT2G20060.1 (Ribosomal protein L4/L1 family )

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-17
Identity = 58/193 (30.05%), Postives = 104/193 (53.89%), Query Frame = 0


Query: 53  LPVLSFAGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKK 112
           +PV +F  E+ G   L          + ++H  +      +++GT ST T +EVSG G+K
Sbjct: 91  IPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 150

Query: 113 PYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV--NT 172
           P+ QK TG+AR G++R P   GG V+ GPKPR  +IK+N++ +RL +  A+ + A     
Sbjct: 151 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 210

Query: 173 IVVEDFGDKFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPR 232
           +V +D G      KTK  ++   +   + K+  +     + + ++L+++N+  + ++   
Sbjct: 211 LVFDDLG--LPTHKTKNIVNYYNQME-NTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSI 270

Query: 233 TLNLFDILNSDKL 244
            LN++ IL  D L
Sbjct: 271 GLNVYSILLHDTL 280

The following BLAST results are available for this feature:

BLAST of Spg000705 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148353.1	1.8e-124	97.12	50S ribosomal protein L4, chloroplastic [Momordica charantia]	[more]
XP_023532270.1	7.6e-123	95.88	50S ribosomal protein L4, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_023007555.1	2.9e-122	95.47	50S ribosomal protein L4, chloroplastic-like isoform X1 [Cucurbita maxima]	[more]
XP_022948154.1	2.9e-122	95.47	50S ribosomal protein L4, chloroplastic-like isoform X1 [Cucurbita moschata] >KA...	[more]
XP_022948155.1	2.9e-122	95.47	50S ribosomal protein L4, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Spg000705 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O50061	2.9e-93	72.65	50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL4 ...	[more]
O80361	4.1e-87	72.15	50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL4 PE=...	[more]
O49937	1.0e-82	65.71	50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL4 PE=...	[more]
Q8DMN0	3.3e-52	53.97	50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722...	[more]
B7K334	2.1e-51	51.85	50S ribosomal protein L4 OS=Rippkaea orientalis (strain PCC 8801) OX=41431 GN=rp...	[more]

BLAST of Spg000705 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D3V7	8.8e-125	97.12	50S ribosomal protein L4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1KZ16	1.4e-122	95.47	50S ribosomal protein L4, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3...	[more]
A0A6J1L3A5	1.4e-122	95.47	50S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1G8Y3	1.4e-122	95.47	50S ribosomal protein L4, chloroplastic-like isoform X2 OS=Cucurbita moschata OX...	[more]
A0A6J1G917	1.4e-122	95.47	50S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita moschata OX...	[more]

BLAST of Spg000705 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07320.1	2.1e-94	72.65	ribosomal protein L4	[more]
AT1G07320.2	2.1e-94	72.65	ribosomal protein L4	[more]
AT1G07320.3	2.1e-94	72.65	ribosomal protein L4	[more]
AT1G07320.4	2.1e-94	72.65	ribosomal protein L4	[more]
AT2G20060.1	2.1e-17	30.05	Ribosomal protein L4/L1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013005	50S ribosomal protein uL4	TIGRFAM	TIGR03953	TIGR03953	coord: 76..243 e-value: 2.4E-54 score: 181.5
IPR013005	50S ribosomal protein uL4	PANTHER	PTHR10746	50S RIBOSOMAL PROTEIN L4	coord: 4..243
IPR013005	50S ribosomal protein uL4	HAMAP	MF_01328_B	Ribosomal_L4_B	coord: 58..258 score: 27.06897
IPR023574	Ribosomal protein L4 domain superfamily	GENE3D	3.40.1370.10		coord: 36..250 e-value: 2.1E-55 score: 189.4
IPR023574	Ribosomal protein L4 domain superfamily	SUPERFAMILY	52166	Ribosomal protein L4	coord: 52..243
IPR002136	Ribosomal protein L4/L1e	PFAM	PF00573	Ribosomal_L4	coord: 77..243 e-value: 1.7E-49 score: 168.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..138
None	No IPR available	PANTHER	PTHR10746:SF6	39S RIBOSOMAL PROTEIN L4, MITOCHONDRIAL	coord: 4..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000705.1	Spg000705.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome