Spg000611 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000611
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	YABBY2-like transcription factor YAB2
Location	scaffold8: 46523495 .. 46529491 (-)
RNA-Seq Expression	Spg000611
Synteny	Spg000611

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTCTCTACAAAAAAGCATCTTTCTTCTCTTCTCTTCTCTTTCTTCCCATTTCTTTTCTCTTTTTCCTTTTCTTCTGCTTCTCCTTCTTCTTCTTTAACACTGAGCTAGAGAGATATAGAGAGCAAGGAGAATTCAGCTTCATCATTATTCCCTTTTCTTTTAATTGCTAAATTTTGTTAAAAGGGCACTTTTTTCTTTGTTTTTTCATTTGGGTTTTCATATATATATAGAGAAAGAGAAAGAGAGAGAGAGAGATTTATATTTATATATATTTGTAATTTTGTTATTGTGTTGTGTTGTGGGAAAGATTAATCAATCTCTCAAAGAAATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTACAAAACCTCGACCTTTCTATCTTTATCTCTCCATTCACTTCCCTTCTTGTTTTTGTTTTTTTTTTTTTTGTTCTGCCATTTACTTTAAAACTTCACACTCCCTCTGATTTGACTATCTCATTCTCTCTCTCACTGGATTCTTTGCTTTTCCAATGGAAATTTGTGTTTTTGTATTGGTATTAAATGTTTTTTTTATGTCTGCCTACAGTACTTTCGTTTTCAGCTGAAAAGACCAGCAAAAATTTTTCACTTTATCGATTTCAGACTGTTGAGAGGGGGAAAAAAAGTGTGTGTGTATGTATACATTTCAAACCAAATCGTAATTTTGTTCTTTTTACTGTTGGAATCTTGAATACTGGTTACAAATTGCAAGATCTTTCGATATTTCTCGATAAATCTGCTGGGAAAAACTGTTTTGAGTGTATATTTTATGAGGAATTTCAACTGGGTTTCCACTCAAACCCTCAGATGTGTACAAATTTTCTTCCAAAAGTGGTTGAAAAAACGAGCCTAATTTTGCGTAGAAAAAAAAAGTTGGTATCTTGGAATTTTCCCAAGAAAATTGAGATGAAAATCTAGCTTCTTCAGACAGTTAGACAACAAAAGGAAGCGAACGACTTCAAGATGTGAAATAGATCCAACATCAAAAGCTAGGGTTCTTGAATTTTTGGAGAGATTCTTCCTAAGTCTAGCTCAAAATTAGGTCTTCTATAATTAATTACATGTGATGATTGAGGATCTGATCTCTCCTTCTCTCTCTTCGATTTTGCAACATAGAATGTCAGTCTTTTAGTCGATCGAAAATCAAACATTTTTAGAAATTATTAATGCTTTAACCAGTTGAATTATGCTCAGATTAACTCATGGAATGTCGGTCGAAGTATAAATTATTAAAAGAAACACCCATATCCCATTCTTGCAAGCTCCAAACCCAGTTTCATCTCACGGTGAAAAATTGTTGTCTCTCCATTTTTGGATAGATCAGAGAGAGCAAAAGCTTTTGCTTTTTCCCCAATCACAATATATATATATTGTGCCTTCAGGCAGATTCGACAGAGGTTGTTCAGAAAGAGAAGCAGCAACAGTGAAATTTTTAGGTCTTAGTTTGGTGACGACAATGGTTCATCTTTTTTTTTGTTCTTTTTTTTTTTTCTTTTTTCTCTCATTCATGATTTTTTTTCTTTTAAATTTTTAATTTTGATTCTGCTGTAATGGCTCTATGGTTTCCGTTCCAGTCATGTCATTTTCTTATATTTTATCTCTATATTTCTCTTTCTTTTTGGATCTAAATTTTCAATCTTTTAACCTCTTGCTTGCGGTGGTGTCAGATTGGAAGTCAGTAAGAGGCACAATGGAAAAAGATGTTTGAAGAGAGAGAGAGAGTAGAAAAAAATTTTAAGTTTAAAATTTAATAGTCATTAGATTATACCCATGTGAGATCTCTGTGTTGTAATATCCAAACAAAATTACCAAATTTTTCCTTCTCTCTCTAATTTCTTGACTATTCAGCTTTTTTTTTTTTTTAGATATTGCATTACAATGTTGTGTAGAGAATTTTTCATTCTGGAAAATTGATGTAATTTAAGGATTATATGGGAAATGTTTGTGTGTTTTGTTGGACAGGTAAGTGTTCCATGCAACAGCATGTTCACACTCGTGACTGTGAGATGTGGGCATTGTTCAAATTTGCTGTCTGTAAACATGGGAGCTTCTCTCCAAGTTGTTCCTCCTCAAGATTCCCAACAGGTAATTCTTCAAAATTCGCTAAAATCAACTCGTCGATTTGAATGTAGCTCAATTGGTTAAGACATATATCTTCAATAATCAAGAAATCAGGTATTCAAATCTCATAATCCACTCCATTATTTCTTAATTACCAACCCATATCAAAGTTTTAATAGATTTTGATGGTGTTTAGATCATAATCATCAGCCCTTTTCATCTCATTCTCTTTCTCTAGATACATTGTTGTAGATGGAGTGAAGATTGTGTCTTTTTTTTTTTTTTCATCTTCTTTTTCAAATGAAAAAAAAAAAGAGAGACAAAAATGAACCAATACTTCCCTAATCAATAAAAATTTGACGGCTATTTATTATTTCTTTACAAATCTTTTTTCTCTCTCTTTTGCATTTCTTAAAGAGATTTCTGCTTAACCAGTCGGGAAGTATTTTACTATTACGCGTATTTCGTGTATATTTATGTGTTTATGTTTGTGTTTTAGGGTCACAAACAGCAGCAAGTGAGCACTGGAGATTCGAGCAGGGACAGAGGTTCTTCTTCTAAATGCAGTAAAATTAGCCCTCTTGATTCTGCTGAACGTGACCAACACAGAATCCCTCCCATTCGCCGTGAGTTTCCCTCTCTCTGAATTTAAGAACAAACAAGCAAGTTTAATGGTAAACCTAAAATTAAGTAGCTTGATACTTAGTCACATACCGATACGTAGGCATCTTTCTACAAACCAGTATCAAAACATTGATAGTTAAAAAATAAATGACGTATGCAGTTAAGTATTGTTTTAGTTTAAATGCTAAACCAACCAATCCAAACCTCATCTTTCTCTACTTTGTGTATTGATTGGACTAATTAGTTAGCCATTTGATGAAATTTTTTATTATTTTTTTATAATTTTCGAGACCCACTTTTGAAAATCATAGAGGAGTCATGAAAACTACTATTTTACCTTTTAGTTTTTAAATATGGTTATGATTTCAAATATGTACTGTTTTCAGAGTGGTAGCTTGGACGATAGTAAATGAACTTCGTTTTTAAAAATAAAAAGTTGAAAACATAATCATCACTGCCAATTTAGTACTCCATGAACAAATCTTGTCTATTTTCAAAAAAAAGAAATGAAAAAACTCGTTTCTCATTGCTGGTTAAGGATGAACTTCTCCAAGCTTTATGACAGTAGTGTCTATTTCTTCTATTAGCTTATTTCTTACATTTTAATGAATAAGTGAATTTTACTGACGTTTTTTTTTATTTAGTAAAAATAAGCCATATAAGGAAGTAAATCATAGTTATCTTTATTTATTAGTGTGGAGACAGAAGTGATGGAAAAGAAAAAAGCATGTGGAGGGTTTGCATTTAATTAACTCTAAAGAAGGGACAGTAGTTATTACGAAATGACATGACATATTTATAATAATTTCCTTAATGCAATTAAATGAAAGATTTTTATTTTTTTTATTTTGTATTTTTTGGATTAATTCTTTACCATGCAAATGAATGGCCCCATCTTCGATCGTGACCGTTCATGCACAATAGAATCTGACCCATCAATATCGTGGGCCATTCTTTATACATATATATGTCATTCCGTATGTATGTATGTGTATATATTATATGATATGTATTGGTTATTTTGGCCAACACTTAGCACAAAAATATGAAAAACTGTAACACAGCCATTTTCTTTATTGTCTTTCACTCATTTGTGATATCTCATTGATTCCTCTGCTCTTTTGAACTTCTTTTTTAATTATATTTTCCATATAGTTTTCATTGTATTCCTTTTTATCCATTCAATTATGATGTCTTGATATGCTTGTTAAGTGTTTAATTATAAGTCAAAGCAAACTTAGCTCAACGGTAATTGACATGTATTCTTGACCATGAGGTCAGAGGTTCGAATCCCTCCACTCCAAATGTTGATTTACTAAAAAAAAATGTTTAATTGTACAAATGTCAGTTGATTTTCTTGTCTTTGAACTTGATCTGATCTGAATTTGTGGTGATTTTGAATGAAAGATGTAATTTTTATCTTTGGGAAAAGAGACCAATAGTGGTTATTCTTCAAAAGCACTTTGGAGTGCTTTCAAATATCTTTGAAATTCCCAAGACTATATATTTTTTTTGAATACATGTTTAGCATGTTGAAAAAACTAACCCAAACTTAATGTAAATCAATTAATACATGTGTTGTTTGCTTGAATCTTTTGTTATTTGGATGTTCGTTAGATATCCATAAATACCTTGATTACATTGTATATGATAATGTTTGTCAGTTTTAATGTGTAGCAAACTTATTATAAAAAGAATAACATAAATTAAGGGATGTTTGATAAGAGTTACAATTCAAAAGATTTTCTTTGTGTTGTTTGTGTTGGTGAGTTTTGAGCAATTTATAATGGTTTTGAATAACGTTGGCAGCACCGGAGAAAAGACAGCGTGTTCCATCTGCATATAATAGGTTCATCAAGTAAGTTGATTTGCTTAATTAATTTGGGGTTGGTGTCTTAATTAGCCATTGATTTTGCTGGATATAAGTATTGTTTATGATCTTATAATGTTTTTTGGTTGCAAAATTAATTAAATGTGGGACTTTGTAGAGAGGAAATCCAAAGGATTAAGGCTAATAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATGTAAGTTCTTGTAGCTCTTGAATTAATTATATAATTAATGATCTGGCTGCCTTGGTTTTTTGTTTCCATGCTGTCTCTGGATAATGCTGGACATCATAATTTGACAATGATTTGATTTGTTTATTTTTTATATACAAAAAGTTTCTCTAAACAAATTAGCCATTAAACAGATCCTCACCTAGATGGGGGTTTACTGTATGAAATTACAGTGGGAGTCTTTTACTTTTATTTCATCATTAAACTTTTGAAAGTTTAGTTTTAGTCCTTAAACTTTCACCCACTTTCTATTTTCAGTCCATTGACTTTAAAAATATCAAATTTTAACCATAGAACTTTAATCAAAATTTAGTTCTAAAACATTGTTTTAATTTATATTGCAAAAATGTGATGTAAATGTAACCTCACTTTGTTTTCAGTAATGCCATTTTTATGTTATCATCTTAACCATATAAACTAAGATCAGAGACAGACAAAAGTTGATGGGGCAAAATCTGATTAAAACCCTTGTTCTTGAGATATACTTATAGCCCTAGTCTTAATGTTACACATGTAATATTTTAATTTTTATTAATGAAATATGAGTAGAACTTGAAAAACTTAAATCAAAATGATTTTTTGACAGTTGAGCATTTGACTTGACTTGGGGGAATTATAATCCCAGTGTTTAGTAATATTGAAACATTGGTTGATTAATTAGAAGTAAGTAATTAAATGATTAATCCATCTAATTATTATTTGGTTTTGCAGTGGGCACATTTTCCTCACATCCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAATTAAGTCTGAATAATTTGACCAGAGATCATCACAGTCCATCCAAATCTCCAATGGGGTTCTGCCACCTGTTAATTCTAGAGATGATGATGTGTCAATAGATAAAATACTAAATAAAACACCCTTTTTATTATATTTATGTGTATTAATTTAGATGCTATTATTCCAACAAAAAATGAGGTTGACGAAGTCCTCCTGCCCTGACCCCCATTCCATAGGAAAGGAAATTACTTTGATAACCTCACCCCCCCCCCCCCCCCCCCCATGTCCTTTTAATACGTGTGATGTTATTTTATCCCCCATCTCTCCTTCTCAACGAGTGAGATTAATGATGTTACCATATTTATATAATCTATTTATTATTGAAATTATTATCGC

mRNA sequence

ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTCGTGACTGTGAGATGTGGGCATTGTTCAAATTTGCTGTCTGTAAACATGGGAGCTTCTCTCCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCACAAACAGCAGCAAGTGAGCACTGGAGATTCGAGCAGGGACAGAGGTTCTTCTTCTAAATGCAGTAAAATTAGCCCTCTTGATTCTGCTGAACGTGACCAACACAGAATCCCTCCCATTCGCCGTGAGTTTCCCTCTCTCTGA

Coding sequence (CDS)

ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTCGTGACTGTGAGATGTGGGCATTGTTCAAATTTGCTGTCTGTAAACATGGGAGCTTCTCTCCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCACAAACAGCAGCAAGTGAGCACTGGAGATTCGAGCAGGGACAGAGGTTCTTCTTCTAAATGCAGTAAAATTAGCCCTCTTGATTCTGCTGAACGTGACCAACACAGAATCCCTCCCATTCGCCGTGAGTTTCCCTCTCTCTGA

Protein sequence

MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVSTGDSSRDRGSSSKCSKISPLDSAERDQHRIPPIRREFPSL

Homology

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BLAST of Spg000611 vs. NCBI nr
Match: XP_038902333.1 (putative axial regulator YABBY 2 isoform X3 [Benincasa hispida])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 100/110 (90.91%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP
Sbjct: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60

Query: 61  QDSQQGHKQQQVSTGDSSRDR---GSSSKCSKISPLDSAERDQHRIPPIR 108
           QDSQQGHKQQQV+ GDSS+DR    SSSKC+KI  LDSAERDQHRIPPIR
Sbjct: 61  QDSQQGHKQQQVNAGDSSKDRASSSSSSKCTKIGSLDSAERDQHRIPPIR 110

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BLAST of Spg000611 vs. NCBI nr
Match: XP_008449608.1 (PREDICTED: putative axial regulator YABBY 2 [Cucumis melo] >XP_016900784.1 PREDICTED: putative axial regulator YABBY 2 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 4.6e-44
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP
Sbjct: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60

Query: 61  QDSQQGHKQQQVSTGDSSRDRGSSS---KCSKISPLD-SAERDQHRIPPIR 108
           QDSQQGHKQQQV+ GDSS+DR SSS   K +KI  LD SAERDQHRIPPIR
Sbjct: 61  QDSQQGHKQQQVNAGDSSKDRASSSSSAKSTKIGSLDSSAERDQHRIPPIR 111

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BLAST of Spg000611 vs. NCBI nr
Match: XP_004140176.1 (putative axial regulator YABBY 2 [Cucumis sativus] >XP_011657596.1 putative axial regulator YABBY 2 [Cucumis sativus] >KGN48059.1 hypothetical protein Csa_004092 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 4.6e-44
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP
Sbjct: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60

Query: 61  QDSQQGHKQQQVSTGDSSRDRGSSS---KCSKISPLD-SAERDQHRIPPIR 108
           QDSQQGHKQQQV+ GDSS+DR SSS   K +KI  LD SAERDQHRIPPIR
Sbjct: 61  QDSQQGHKQQQVNAGDSSKDRASSSSSTKSTKIGSLDSSAERDQHRIPPIR 111

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BLAST of Spg000611 vs. NCBI nr
Match: XP_022153076.1 (putative axial regulator YABBY 2 [Momordica charantia])

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 102/110 (92.73%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP
Sbjct: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60

Query: 61  QD-SQQGHKQQQV-STGDSSRDRG-SSSKCSKISPLDSAERDQHRIPPIR 108
           QD SQQGHKQQQV STGDSS++RG SSSKCSKI   DSAERDQHRIPPIR
Sbjct: 61  QDSSQQGHKQQQVSSTGDSSKERGSSSSKCSKI---DSAERDQHRIPPIR 107

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BLAST of Spg000611 vs. NCBI nr
Match: XP_022986992.1 (putative axial regulator YABBY 2 isoform X3 [Cucurbita maxima])

HSP 1 Score: 184.5 bits (467), Expect = 5.1e-43
Identity = 94/116 (81.03%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           MSL+MMA+ERVCYVHCNFCNTILAVSVPCN+MFTLVTVRCGHCSNLLSVNMGAS+QV+PP
Sbjct: 1   MSLEMMAAERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASVQVLPP 60

Query: 61  QDSQQGHKQQQVSTGDSSRDRG-------SSSKCSKISPLDSAERDQHRIPPIRRE 110
           QDSQ G+KQQQVS GD S+DRG       SSSKC+KI+ LDSAERDQHRIPPIR++
Sbjct: 61  QDSQPGNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRQK 116

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BLAST of Spg000611 vs. ExPASy Swiss-Prot
Match: Q9XFB0 (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana OX=3702 GN=YAB2 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.1e-19
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASL-QVVP 60
           MS+D  +SERVCYVHC+FC TILAVSVP  S+FTLVTVRCGHC+NLLS+N+G SL Q   
Sbjct: 1   MSVD-FSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSA 60

Query: 61  PQDSQQGHKQQQVSTGDSSRDRGSSSKCSKISPLDSAERDQHRIPPIR 108
           P   Q     +Q +T   +R   +SS  S  +  ++ +R+  R+PPIR
Sbjct: 61  PPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPIR 107

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BLAST of Spg000611 vs. ExPASy Swiss-Prot
Match: Q10FZ7 (Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-18
Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 7   ASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQG 66
           A E VCYVHCNFCNTI AVSVP NSM  +VTVRCGHC++LLSVN+   +Q +P +D  Q 
Sbjct: 8   APEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQD 67

Query: 67  H-KQQQVSTGDSSRDRGSSSKCSKISPLDSAERDQHRI---PPIRRE 110
           + K   +S  ++  + GSSS+  ++  + S    +H +   PP +R+
Sbjct: 68  NLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQ 114

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BLAST of Spg000611 vs. ExPASy Swiss-Prot
Match: Q2QM17 (Protein YABBY 6 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB6 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.2e-16
Identity = 53/130 (40.77%), Postives = 68/130 (52.31%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           MS  +  +E+VCYVHCNFCNTILAVSVP NSM  +VTVRCGHC+NLLSVN+   +   P 
Sbjct: 1   MSAQIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPA 60

Query: 61  QDSQQGHKQQQVSTGDSSRDR----------GSSSKCSKISPLDSA-----------ERD 110
                 H  Q+       RD+           SSS   ++ P  +A           E+ 
Sbjct: 61  LQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQA 120

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BLAST of Spg000611 vs. ExPASy Swiss-Prot
Match: Q8GW46 (Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-15
Identity = 50/114 (43.86%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           M+  +MA+E++CY+ CNFCN ILAV+VPC+S+F +VTVRCGHC+NL SVNM A+LQ +  
Sbjct: 1   MANSVMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSR 60

Query: 61  QDSQQGHKQQQVSTGDSSRDRGSSSKC-----SKISPLDSAERDQHRIPPIRRE 110
            + Q        +T  +  + GSSS+      S+IS     E+     PP +R+
Sbjct: 61  PNFQ--------ATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPPEKRQ 106

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BLAST of Spg000611 vs. ExPASy Swiss-Prot
Match: Q01JG2 (Protein YABBY 5 OS=Oryza sativa subsp. indica OX=39946 GN=YAB5 PE=3 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-14
Identity = 33/43 (76.74%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 9  ERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNM 52
          E++CYVHCNFC+TILAV VPC+S+F  VTVRCGHC+NLLSVN+
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNL 71

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BLAST of Spg000611 vs. ExPASy TrEMBL
Match: A0A1S4DXR9 (putative axial regulator YABBY 2 OS=Cucumis melo OX=3656 GN=LOC103491442 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.2e-44
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP
Sbjct: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60

Query: 61  QDSQQGHKQQQVSTGDSSRDRGSSS---KCSKISPLD-SAERDQHRIPPIR 108
           QDSQQGHKQQQV+ GDSS+DR SSS   K +KI  LD SAERDQHRIPPIR
Sbjct: 61  QDSQQGHKQQQVNAGDSSKDRASSSSSAKSTKIGSLDSSAERDQHRIPPIR 111

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BLAST of Spg000611 vs. ExPASy TrEMBL
Match: A0A0A0KGY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G426940 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.2e-44
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP
Sbjct: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60

Query: 61  QDSQQGHKQQQVSTGDSSRDRGSSS---KCSKISPLD-SAERDQHRIPPIR 108
           QDSQQGHKQQQV+ GDSS+DR SSS   K +KI  LD SAERDQHRIPPIR
Sbjct: 61  QDSQQGHKQQQVNAGDSSKDRASSSSSTKSTKIGSLDSSAERDQHRIPPIR 111

[Close]

BLAST of Spg000611 vs. ExPASy TrEMBL
Match: A0A6J1DJL5 (putative axial regulator YABBY 2 OS=Momordica charantia OX=3673 GN=LOC111020666 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.5e-44
Identity = 102/110 (92.73%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP
Sbjct: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60

Query: 61  QD-SQQGHKQQQV-STGDSSRDRG-SSSKCSKISPLDSAERDQHRIPPIR 108
           QD SQQGHKQQQV STGDSS++RG SSSKCSKI   DSAERDQHRIPPIR
Sbjct: 61  QDSSQQGHKQQQVSSTGDSSKERGSSSSKCSKI---DSAERDQHRIPPIR 107

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BLAST of Spg000611 vs. ExPASy TrEMBL
Match: A0A6J1J940 (putative axial regulator YABBY 2 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111484576 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.5e-43
Identity = 94/116 (81.03%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           MSL+MMA+ERVCYVHCNFCNTILAVSVPCN+MFTLVTVRCGHCSNLLSVNMGAS+QV+PP
Sbjct: 1   MSLEMMAAERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASVQVLPP 60

Query: 61  QDSQQGHKQQQVSTGDSSRDRG-------SSSKCSKISPLDSAERDQHRIPPIRRE 110
           QDSQ G+KQQQVS GD S+DRG       SSSKC+KI+ LDSAERDQHRIPPIR++
Sbjct: 61  QDSQPGNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRQK 116

[Close]

BLAST of Spg000611 vs. ExPASy TrEMBL
Match: A0A6J1JFK2 (putative axial regulator YABBY 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484576 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.2e-43
Identity = 94/114 (82.46%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           MSL+MMA+ERVCYVHCNFCNTILAVSVPCN+MFTLVTVRCGHCSNLLSVNMGAS+QV+PP
Sbjct: 1   MSLEMMAAERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASVQVLPP 60

Query: 61  QDSQQGHKQQQVSTGDSSRDRG-------SSSKCSKISPLDSAERDQHRIPPIR 108
           QDSQ G+KQQQVS GD S+DRG       SSSKC+KI+ LDSAERDQHRIPPIR
Sbjct: 61  QDSQPGNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIR 114

[Close]

BLAST of Spg000611 vs. TAIR 10
Match: AT1G08465.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 94.4 bits (233), Expect = 6.4e-20
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASL-QVVP 60
           MS+D  +SERVCYVHC+FC TILAVSVP  S+FTLVTVRCGHC+NLLS+N+G SL Q   
Sbjct: 1   MSVD-FSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSA 60

Query: 61  PQDSQQGHKQQQVSTGDSSRDRGSSSKCSKISPLDSAERDQHRIPPIR 108
           P   Q     +Q +T   +R   +SS  S  +  ++ +R+  R+PPIR
Sbjct: 61  PPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPIR 107

[Close]

BLAST of Spg000611 vs. TAIR 10
Match: AT2G26580.1 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-16
Identity = 50/114 (43.86%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           M+  +MA+E++CY+ CNFCN ILAV+VPC+S+F +VTVRCGHC+NL SVNM A+LQ +  
Sbjct: 1   MANSVMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSR 60

Query: 61  QDSQQGHKQQQVSTGDSSRDRGSSSKC-----SKISPLDSAERDQHRIPPIRRE 110
            + Q        +T  +  + GSSS+      S+IS     E+     PP +R+
Sbjct: 61  PNFQ--------ATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPPEKRQ 106

[Close]

BLAST of Spg000611 vs. TAIR 10
Match: AT2G26580.2 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-16
Identity = 50/114 (43.86%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1   MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPP 60
           M+  +MA+E++CY+ CNFCN ILAV+VPC+S+F +VTVRCGHC+NL SVNM A+LQ +  
Sbjct: 1   MANSVMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSR 60

Query: 61  QDSQQGHKQQQVSTGDSSRDRGSSSKC-----SKISPLDSAERDQHRIPPIRRE 110
            + Q        +T  +  + GSSS+      S+IS     E+     PP +R+
Sbjct: 61  PNFQ--------ATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPPEKRQ 106

[Close]

BLAST of Spg000611 vs. TAIR 10
Match: AT4G00180.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-13
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 7  ASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQG 66
          +++++CYVHC+FC+T+LAVSVP +S+F  VTVRCGHCSNLLSV +     ++ P  S  G
Sbjct: 21 STDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLL-PSVSNLG 80

Query: 67 H 68
          H
Sbjct: 81 H 80

[Close]

BLAST of Spg000611 vs. TAIR 10
Match: AT2G45190.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-12
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 8  SERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNM 52
          S+ +CYV CNFC TILAV+VP  S+F  VTVRCG C+NLLSVNM
Sbjct: 22 SDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNM 65

The following BLAST results are available for this feature:

BLAST of Spg000611 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902333.1	1.3e-46	90.91	putative axial regulator YABBY 2 isoform X3 [Benincasa hispida]	[more]
XP_008449608.1	4.6e-44	89.19	PREDICTED: putative axial regulator YABBY 2 [Cucumis melo] >XP_016900784.1 PREDI...	[more]
XP_004140176.1	4.6e-44	89.19	putative axial regulator YABBY 2 [Cucumis sativus] >XP_011657596.1 putative axia...	[more]
XP_022153076.1	1.3e-43	92.73	putative axial regulator YABBY 2 [Momordica charantia]	[more]
XP_022986992.1	5.1e-43	81.03	putative axial regulator YABBY 2 isoform X3 [Cucurbita maxima]	[more]

BLAST of Spg000611 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XFB0	9.1e-19	52.78	Putative axial regulator YABBY 2 OS=Arabidopsis thaliana OX=3702 GN=YAB2 PE=1 SV...	[more]
Q10FZ7	3.4e-18	46.73	Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1	[more]
Q2QM17	7.2e-16	40.77	Protein YABBY 6 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB6 PE=2 SV=1	[more]
Q8GW46	2.7e-15	43.86	Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1	[more]
Q01JG2	3.0e-14	76.74	Protein YABBY 5 OS=Oryza sativa subsp. indica OX=39946 GN=YAB5 PE=3 SV=2	[more]

BLAST of Spg000611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DXR9	2.2e-44	89.19	putative axial regulator YABBY 2 OS=Cucumis melo OX=3656 GN=LOC103491442 PE=3 SV...	[more]
A0A0A0KGY1	2.2e-44	89.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G426940 PE=3 SV=1	[more]
A0A6J1DJL5	6.5e-44	92.73	putative axial regulator YABBY 2 OS=Momordica charantia OX=3673 GN=LOC111020666 ...	[more]
A0A6J1J940	2.5e-43	81.03	putative axial regulator YABBY 2 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1JFK2	3.2e-43	82.46	putative axial regulator YABBY 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of Spg000611 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08465.1	6.4e-20	52.78	Plant-specific transcription factor YABBY family protein	[more]
AT2G26580.1	1.9e-16	43.86	plant-specific transcription factor YABBY family protein	[more]
AT2G26580.2	1.9e-16	43.86	plant-specific transcription factor YABBY family protein	[more]
AT4G00180.1	2.0e-13	55.74	Plant-specific transcription factor YABBY family protein	[more]
AT2G45190.1	3.8e-12	70.45	Plant-specific transcription factor YABBY family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006780	YABBY protein	PFAM	PF04690	YABBY	coord: 7..88 e-value: 5.7E-30 score: 105.1
IPR006780	YABBY protein	PANTHER	PTHR31675	PROTEIN YABBY 6-RELATED	coord: 6..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..113
None	No IPR available	PANTHER	PTHR31675:SF30	AXIAL REGULATOR YABBY 2-RELATED	coord: 6..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000611.1	Spg000611.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0007275	multicellular organism development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding