Spg000590 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000590
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein MET1, chloroplastic
Location	scaffold8: 48187690 .. 48188687 (-)
RNA-Seq Expression	Spg000590
Synteny	Spg000590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTACGCCAAGGACTACGTCTCTACAAGTATGGCTGCATATCCAACTTGTCCTCTCCCTGTATTGTTTACTTTTGAATTGTGCCCACATGAATGTACCAACACCGCCTATCTTTCTGTTTTTCTTACCTCAAGGAATGCTAAATATGAGGAAGCATTAGAGAAATTCGAGTCAGTGTTGGGATCAAAACCAACTCCAGACGAAGCTTCAGTTTCCAGTTACAATGTTGCATGCTGTTATTCCCAACTAAATCAGGTAATGCTTTTTATTTAATGCAGGATCTGTTTCGTAAACTAAAATTGCAATGACGTGTTCTTTTCTATCTGAAATTTAATATACTTCTCTAGATCCGTTTGTTTGTGAACAGTTTCATCTTCCTGGCCAAAATTTCACAAAATGGGGATAACTGATTAGTGTCCCTTTATAATTTTCGAACAGTTAAAAGCTGGGCTATCCGCACTTGAAGACGCCTTGGAAGCAGGATTTGAAGACTTCAAGGTAACATCCACTGCAGGTTTTGATATTCAAACAGATATTACTTGCTCTGGACAGTATATATGTGGAAGTTGTGATGAAATTATTACTCGTATGTTTGCCAGAGAGTTCGGACGGATCCTGATCTATCAAACTTAAGGACATTGGAGGAATTTGAGCCTCTTGTGAAAAGGTTTGACGAGTCGTTTATCAACGAGAATGCCATCAATGCCATTAAGTCGCTATTTGGCTTTAAGAAATAAAAACAAGACTCTTCTCTAGTAATCTTCGATTATATAATTCAAATTATTTCTGTCACATCTTATATCAAAATATTCAAAGCTTCTAGCTTTTAGATGGATAACAAAAAAATTTCAATGTAATTTGTTCTCATAAAAGTTCTCTTTTATGTATATTAGTGATTTTATTATGCACATTGAAGCACTATTGCAAGAAACCTGTTTGTGTTTACTTAATTCCGAGAAAGCTAGCTTATGAATTTCTGATTGGAAGTTGAAACT

mRNA sequence

ATGATCTACGCCAAGGACTACGTCTCTACAAGTATGGCTGCATATCCAACTTGTCCTCTCCCTGTATTGTTTACTTTTGAATTGTGCCCACATGAATGTACCAACACCGCCTATCTTTCTGTTTTTCTTACCTCAAGGAATGCTAAATATGAGGAAGCATTAGAGAAATTCGAGTCAGTGTTGGGATCAAAACCAACTCCAGACGAAGCTTCAGTTTCCAGTTACAATGTTGCATGCTGTTATTCCCAACTAAATCAGTTAAAAGCTGGGCTATCCGCACTTGAAGACGCCTTGGAAGCAGGATTTGAAGACTTCAAGAGAGTTCGGACGGATCCTGATCTATCAAACTTAAGGACATTGGAGGAATTTGAGCCTCTTGTGAAAAGGTTTGACGAGTCGTTTATCAACGAGAATGCCATCAATGCCATTAAGTCGCTATTTGGCTTTAAGAAATAA

Coding sequence (CDS)

ATGATCTACGCCAAGGACTACGTCTCTACAAGTATGGCTGCATATCCAACTTGTCCTCTCCCTGTATTGTTTACTTTTGAATTGTGCCCACATGAATGTACCAACACCGCCTATCTTTCTGTTTTTCTTACCTCAAGGAATGCTAAATATGAGGAAGCATTAGAGAAATTCGAGTCAGTGTTGGGATCAAAACCAACTCCAGACGAAGCTTCAGTTTCCAGTTACAATGTTGCATGCTGTTATTCCCAACTAAATCAGTTAAAAGCTGGGCTATCCGCACTTGAAGACGCCTTGGAAGCAGGATTTGAAGACTTCAAGAGAGTTCGGACGGATCCTGATCTATCAAACTTAAGGACATTGGAGGAATTTGAGCCTCTTGTGAAAAGGTTTGACGAGTCGTTTATCAACGAGAATGCCATCAATGCCATTAAGTCGCTATTTGGCTTTAAGAAATAA

Protein sequence

MIYAKDYVSTSMAAYPTCPLPVLFTFELCPHECTNTAYLSVFLTSRNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFKK

Homology

[Close]

BLAST of Spg000590 vs. NCBI nr
Match: XP_038902944.1 (protein MET1, chloroplastic [Benincasa hispida])

HSP 1 Score: 208.4 bits (529), Expect = 4.4e-50
Identity = 104/106 (98.11%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 46  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDF 105
           +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDALEAGFEDF
Sbjct: 228 KNAKYEEALEKFESVLGSKPTPDEASVASYNVACCYSQLNQLKAGLSALEDALEAGFEDF 287

Query: 106 KRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFKK 152
           KRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFKK
Sbjct: 288 KRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFKK 333

[Close]

BLAST of Spg000590 vs. NCBI nr
Match: XP_004149641.1 (protein MET1, chloroplastic [Cucumis sativus] >KGN54020.1 hypothetical protein Csa_021662 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 2.8e-49
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 46  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDF 105
           +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDALEAGFEDF
Sbjct: 232 KNAKYEEALEKFESVLGSKPTPDEASVASYNVACCYSQLNQLKAGLSALEDALEAGFEDF 291

Query: 106 KRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFK 151
           KRVRTDPDLSN+RTLEEFEPLVKRFDESFINENAINAIKSLFGFK
Sbjct: 292 KRVRTDPDLSNIRTLEEFEPLVKRFDESFINENAINAIKSLFGFK 336

[Close]

BLAST of Spg000590 vs. NCBI nr
Match: XP_016900751.1 (PREDICTED: uncharacterized protein LOC103491636 isoform X2 [Cucumis melo])

HSP 1 Score: 201.8 bits (512), Expect = 4.1e-48
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 46  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDF 105
           +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDAL AGFEDF
Sbjct: 127 KNAKYEEALEKFESVLGSKPTPDEASVASYNVACCYSQLNQLKAGLSALEDALGAGFEDF 186

Query: 106 KRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFK 151
           KRVRTDPDLSNLR LEEFEPLVKRFDESFINENAINAIKSLFGFK
Sbjct: 187 KRVRTDPDLSNLRALEEFEPLVKRFDESFINENAINAIKSLFGFK 231

[Close]

BLAST of Spg000590 vs. NCBI nr
Match: XP_008449894.1 (PREDICTED: uncharacterized protein LOC103491636 isoform X1 [Cucumis melo] >KAA0040116.1 putative tyrosine phosphatase [Cucumis melo var. makuwa] >TYK21739.1 putative tyrosine phosphatase [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 4.1e-48
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 46  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDF 105
           +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDAL AGFEDF
Sbjct: 230 KNAKYEEALEKFESVLGSKPTPDEASVASYNVACCYSQLNQLKAGLSALEDALGAGFEDF 289

Query: 106 KRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFK 151
           KRVRTDPDLSNLR LEEFEPLVKRFDESFINENAINAIKSLFGFK
Sbjct: 290 KRVRTDPDLSNLRALEEFEPLVKRFDESFINENAINAIKSLFGFK 334

[Close]

BLAST of Spg000590 vs. NCBI nr
Match: XP_022996247.1 (protein MET1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 46  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDF 105
           +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLN+LKAGLSALEDAL AGFEDF
Sbjct: 228 KNAKYEEALEKFESVLGSKPTPDEASVASYNVACCYSQLNELKAGLSALEDALAAGFEDF 287

Query: 106 KRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFKK 152
           KR+RTDPDLSNLRTLEEFE L+KRFDESFINENAINAIKSLFGFKK
Sbjct: 288 KRIRTDPDLSNLRTLEEFETLLKRFDESFINENAINAIKSLFGFKK 333

[Close]

BLAST of Spg000590 vs. ExPASy Swiss-Prot
Match: Q94BS2 (Protein MET1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MET1 PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.4e-43
Identity = 82/107 (76.64%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 45  SRNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFED 104
           S+N KYEEALE+FESVLGSKPTP+EASV+SYNVACCYS+LNQ++AGLSALE+AL++G+ED
Sbjct: 228 SKNGKYEEALERFESVLGSKPTPEEASVASYNVACCYSKLNQVQAGLSALEEALKSGYED 287

Query: 105 FKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFKK 152
           FKR+R+DPDL  LR  ++F+PL+K+FDESFINE+AINAIKSLFGF K
Sbjct: 288 FKRIRSDPDLETLRKSKDFDPLLKQFDESFINESAINAIKSLFGFNK 334

[Close]

BLAST of Spg000590 vs. ExPASy TrEMBL
Match: A0A0A0KWR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268040 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.4e-49
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 46  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDF 105
           +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDALEAGFEDF
Sbjct: 232 KNAKYEEALEKFESVLGSKPTPDEASVASYNVACCYSQLNQLKAGLSALEDALEAGFEDF 291

Query: 106 KRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFK 151
           KRVRTDPDLSN+RTLEEFEPLVKRFDESFINENAINAIKSLFGFK
Sbjct: 292 KRVRTDPDLSNIRTLEEFEPLVKRFDESFINENAINAIKSLFGFK 336

[Close]

BLAST of Spg000590 vs. ExPASy TrEMBL
Match: A0A5D3DEH5 (Putative tyrosine phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001110 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.0e-48
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 46  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDF 105
           +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDAL AGFEDF
Sbjct: 230 KNAKYEEALEKFESVLGSKPTPDEASVASYNVACCYSQLNQLKAGLSALEDALGAGFEDF 289

Query: 106 KRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFK 151
           KRVRTDPDLSNLR LEEFEPLVKRFDESFINENAINAIKSLFGFK
Sbjct: 290 KRVRTDPDLSNLRALEEFEPLVKRFDESFINENAINAIKSLFGFK 334

[Close]

BLAST of Spg000590 vs. ExPASy TrEMBL
Match: A0A1S4DXP3 (uncharacterized protein LOC103491636 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491636 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.0e-48
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 46  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDF 105
           +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDAL AGFEDF
Sbjct: 127 KNAKYEEALEKFESVLGSKPTPDEASVASYNVACCYSQLNQLKAGLSALEDALGAGFEDF 186

Query: 106 KRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFK 151
           KRVRTDPDLSNLR LEEFEPLVKRFDESFINENAINAIKSLFGFK
Sbjct: 187 KRVRTDPDLSNLRALEEFEPLVKRFDESFINENAINAIKSLFGFK 231

[Close]

BLAST of Spg000590 vs. ExPASy TrEMBL
Match: A0A1S3BMG9 (uncharacterized protein LOC103491636 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491636 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.0e-48
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 46  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDF 105
           +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDAL AGFEDF
Sbjct: 230 KNAKYEEALEKFESVLGSKPTPDEASVASYNVACCYSQLNQLKAGLSALEDALGAGFEDF 289

Query: 106 KRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFK 151
           KRVRTDPDLSNLR LEEFEPLVKRFDESFINENAINAIKSLFGFK
Sbjct: 290 KRVRTDPDLSNLRALEEFEPLVKRFDESFINENAINAIKSLFGFK 334

[Close]

BLAST of Spg000590 vs. ExPASy TrEMBL
Match: A0A6J1K1D9 (protein MET1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491529 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.8e-48
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 46  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDF 105
           +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLN+LKAGLSALEDAL AGFEDF
Sbjct: 228 KNAKYEEALEKFESVLGSKPTPDEASVASYNVACCYSQLNELKAGLSALEDALAAGFEDF 287

Query: 106 KRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFKK 152
           KR+RTDPDLSNLRTLEEFE L+KRFDESFINENAINAIKSLFGFKK
Sbjct: 288 KRIRTDPDLSNLRTLEEFETLLKRFDESFINENAINAIKSLFGFKK 333

[Close]

BLAST of Spg000590 vs. TAIR 10
Match: AT1G55480.1 (protein containing PDZ domain, a K-box domain, and a TPR region )

HSP 1 Score: 175.3 bits (443), Expect = 3.8e-44
Identity = 82/107 (76.64%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 45  SRNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFED 104
           S+N KYEEALE+FESVLGSKPTP+EASV+SYNVACCYS+LNQ++AGLSALE+AL++G+ED
Sbjct: 228 SKNGKYEEALERFESVLGSKPTPEEASVASYNVACCYSKLNQVQAGLSALEEALKSGYED 287

Query: 105 FKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFKK 152
           FKR+R+DPDL  LR  ++F+PL+K+FDESFINE+AINAIKSLFGF K
Sbjct: 288 FKRIRSDPDLETLRKSKDFDPLLKQFDESFINESAINAIKSLFGFNK 334

The following BLAST results are available for this feature:

BLAST of Spg000590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902944.1	4.4e-50	98.11	protein MET1, chloroplastic [Benincasa hispida]	[more]
XP_004149641.1	2.8e-49	97.14	protein MET1, chloroplastic [Cucumis sativus] >KGN54020.1 hypothetical protein C...	[more]
XP_016900751.1	4.1e-48	96.19	PREDICTED: uncharacterized protein LOC103491636 isoform X2 [Cucumis melo]	[more]
XP_008449894.1	4.1e-48	96.19	PREDICTED: uncharacterized protein LOC103491636 isoform X1 [Cucumis melo] >KAA00...	[more]
XP_022996247.1	1.2e-47	93.40	protein MET1, chloroplastic [Cucurbita maxima]	[more]

BLAST of Spg000590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94BS2	5.4e-43	76.64	Protein MET1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MET1 PE=1 SV=1	[more]

BLAST of Spg000590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWR6	1.4e-49	97.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268040 PE=4 SV=1	[more]
A0A5D3DEH5	2.0e-48	96.19	Putative tyrosine phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S4DXP3	2.0e-48	96.19	uncharacterized protein LOC103491636 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BMG9	2.0e-48	96.19	uncharacterized protein LOC103491636 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1K1D9	5.8e-48	93.40	protein MET1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491529 PE=4 SV=...	[more]

BLAST of Spg000590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55480.1	3.8e-44	76.64	protein containing PDZ domain, a K-box domain, and a TPR region	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 43..142 e-value: 9.8E-7 score: 30.8
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 48..100
None	No IPR available	PANTHER	PTHR47661:SF3	BINDING PROTEIN, PUTATIVE-RELATED	coord: 44..151
None	No IPR available	PANTHER	PTHR47661	PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC	coord: 44..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000590.1	Spg000590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009611	response to wounding
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009575	chromoplast stroma
cellular_component	GO:0035448	extrinsic component of thylakoid membrane
molecular_function	GO:0005515	protein binding