Spg000459 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000459
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Non-structural maintenance of chromosomes element 1 homolog
Location	scaffold8: 47944236 .. 47948996 (+)
RNA-Seq Expression	Spg000459
Synteny	Spg000459

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAAATTTTCACGATCCTGCAACCAGCGAACGCGACTTCCAGGCGAAGCAGCGAACACAACGGCGGCGACGGCGAGTACACGGCGGTGGTGACGGCGAGTTCACAACGGCAGCGAACACGACGGCGAGTAGTTCACGATTTTAAGAACCGAACACGATTTCCAATCTTAGTGTATGAATTTTCTGCTCCATGAGTTTCTTCTTTATTATTTCTGGAGCAAGTCATTTCTCAGGGGCATGAGTATTGGTCGAAGATAGAGCTCATTTTTGTTAATCTTCTGTTAATCAGGAGCTTTGAGATAGTGGGTCAAGGTGTATGGGTGCAGATATCCTTTATGTCTCACCTTAAATGTTTCTTTTGACTTAAAATTTGTTTTTAATATAATTGTTCAACTGTTTCTATATCTCTTGCCTTGAACGTAGTGGTTGGTGTTTCTGCTTGGTTATAAGAACCTTGGGTTGTTTACTAAAATAGGACACGAAACTTCACTTCCGGGTAAGTCTCTGAAAGTTCTTCCCGCACAAACTCTTCTCTTATATGTTTTGGCTGAAATTTCTTACAGAACCAACAATGTCTGAATTTTTGAAGTATTAGTTGACCTTGTATTAGGGTTCAGAATGCCGGAGCTGAGCTGGAGACATCACACTCTCATTCAAGCGCTACTCACTCGTGGCCCACTCAGAGAGGATCGGTTCCGTTTGGTGTTTACCCGCATCACCGAAAAGAGTCCAGGTTTGAAATTCTTTCTCGTTTATCAGTTTAGTATCCAAGTTGGGAAGCAATGATTTAAGAGTACGGCGTCCTGCTCCATTTTGTCTAACAAATGATGTAGTATTTGTCCAAGGCTTTTTGTAATTATACGCTAGGTTCTATCATTTTGAGTTGGCAGCCCTTCCTTTAAGGGAGGTCTTTTTGGGGCTGGTTTTTTTTGTATGCCCTTGTATTCTTTCATTTTTCCTCAACGAAAGCTGGTATATTCATCAAAAAAAAAAAAAAAAAATTGTAGTAAATTTATGTTCAAAGACTGCTTGAAATTTGCAATAGAATGGTGTTTGAATCTAATGTTAATGGAAGAAATTGCATCTGGGTTTACAACCCTGTACGTGTTAGAAATATGTATCCCTTTCGGAGTTTGCTCTGGAGAAAATATATTGTTTTGGTTTCTTAAAGGTTATAATCAACACTCTTGTAGACCACATACACCTTTCTACCAGCACAACCCTTTCTCCATCCATAACGATTGAAAGAGGAGTATTTTAATTGATATTTTATCTGGGAAATAATATACACATATTGGCTGATGGTTGACAACTTATGTATGTTCAATGTTTGCTTTGGTGCAGATAATGACCAGCAGCTTTTTAATAGTTACCTCCTGGCAATAAATAAAGCACTTTCATTTGCTCAGTTTGAGCTGCGAGGCTGCAGAAACCAATATGATGGTCGTGTTTATTATGGCTTGGTCAATACTGTATCTGACGAACAGTCCAAACTGGGAACGAAGTATTCAGTTCCACAGATTGCCTTTTATAAAGCCATTGTGAGGTTCTTCAACCTTTTCTTTTCTCTTTACTCTTCAGAGTTTGGATACCGATCCGACATCTGTAACATATAAATCTTAAGTTGTCATCGTTGCCATTCTTACTGGATTGGATATGAATGTATGTGGATGGTCTTCTCATCCCCTTCTTAACTATACCAGGACAAATATGATAAAAGGAGGAAAAGTGAGCTCCCTATTTGCCAAAGAGTTGCAAAAAACTCTATATTGACTCTCTGACTTTCAAAAGAAGAAGTTGGGAACGGTTACAAAGCTATTAAAGAGACTACACAATCTGAAAACTGGATAGATTATTCTATCGATAGTCTCATGCAGAGTATAGGAGGCTTTCTCAAAATGTTACCACTCCTTTCTAACCAAATAGCCTAGAAAATTGCACCCACCAAGAGCCTCCAAAATGTAATCATCTTGTCAAAGAGACACATTCCAAACAAGCAGTGGCAAATTGCCCTATGATCATCTTGGGGTTGCACCAACATGCATATATTGTTTGAAATATGTTATGGATGGCTGTCTCATCTCTTATAATGATGTTTTATCTTAATCTCAAGTACTAATTGTCATTGTTATATGTGCATACTCGGTTATAAGTTATAAAACATTCCTACTCAACTGACAAACTCATTTATCAGTTTAGGGATTTGCCCACTCTATCTGAGAATTCTGAGTGCAATGAGGGCTAGCTGCTTTAGAAATTTGATTGTTAACCACGTAACGTTTGGTGGCTTTAACTGCTAAGGTTTATGCTGCCTTATTTATTGAATAATCAACAATGGGAAATATTGCTGTTCTCCAATAAACTGGCCCTTCTGTTAATTTGCCTAACAATCAATGATGGGAACTAAGTGGTTATAATATATGCATCTTCTGTTTTGTTGTCGTTGAGGTATTTAATTTATTAAGAAAAAATTGCAATGTCAGGTTGAAGCAATTGCACAAGATCCATCTGCTCAAGGTGGAATATCCAACATTGCTGCTCTTCATCTGCAGTTGGAAAATCAGGTTTCTCTCGTTTTTCTTTGACCAAACTACCATTTTGTCTAGCCCATTATGATGAAGTGTGATGCCAACATACTTTTGAGTTCGCTATTGTCAAGTCAGCTGCATATTTAACTAAAGTTAGCATCTCTGATCTTTTGCCTGATAAACAAGACTAATTGCAGTCACCATGTTATAGAGCGTATTTGGACAAGAACATTCTTCAAGTTGTCACATCTCTTGAAAGAAAATAACTATTGGGAATGTGTTCCACAGGAGTATCAATTGATTTTTTATTATATCATCTATAGAAGGTTTACTAGTTCTTGAATTATGGATTGATGCGAGCGAGATTCTTCTTAAATTTAAATATTGAGAATGGAGTGGCAAGCGTTCTCTACATGGTAAAAGCCCGTATCTTATTAATCAATTTTTGATATTGGGAACTGTTAATCTGACAGTGGTATGAATGACTAGTATTTATTTATACATTCACTTCTTTGCAGCCACTTAAATTAGTTTTGCTCAAGAGTCACCCTCAAGTTTGTTTTTTTTTATTTATTTCTTTTCCAGTACCTGAACTTTTATAATTGTTAAATTTGAAACTAAGAGTTTAAGGCCACTCTTAAATTCTACACAATTTGGTTGCAAGGCTTTTGATTTGCCACCATTGAGAGTAGAGTTGAGAACTGACAAAAGTTTCCAGCTCCTTGTATTTGTAACAATGTATGCCTTTATCTGATTCTTCATATATTTAAGTTTCCTATTGTATCATATTCGTATGCATTGTTTGACTATTACTGTTTTATCACTGCCAGCTGGGGGATACAGGGTCCCAGTCTCAAGTCATACCACCTGCCTTCAAGAATTTCTCAATATCTCTCAAGGAAAAAACAATTGCCGAGCTTGCTCAGGATCAGTGGCTTAATTGCACCCCTGATGGTTGTGTAAATTTGGGAGTCAGATCGTTTCTTGATTTGCGAAGTTGGTTCCGCACTAATGAAGTACCTTCATGTGAAGTGTGCAATGAAGCTGGAGTGAAGGTTCTCTTCTTTTATGTCATTTTATGATTTACACTGGTCGAGAAAGCTCCTGAAAAGTCTATTATCATCTTATCTCAATTTTGTATGCTGCATTATATTTCCCAATTCCCACACTAATAGGAGAACCAAAACGTTTGATGAGAGGGATTTTTTGTTGGTAACACAATTTGTTTGGATCTCAACATGATTTGAGCTCCACATGGGTTTGTACTGTAGAGAACTTTAAGAGAACTTATTTCCTTGATGATTTATATCTTTGCTGGACTTGTTATTCACAGGCAGAGTTGTGTGATAATGAAGGTTGCACTGTCCGTGTACATCGATATTGCCTTAAGAAAATGTTATCCAATAAAAAGGTAATAAGATGTGGTACCCTCCTATCTTAAATCTTTAATCAGCAAGATCTCTTGTGCCTAACAGTTCTTTAACTGACTATTATTAGAGTAAAAGGGCTTGCCCAGGTTGTGGCACTCAATGGCGAGCTACAGCGCCGAATATGGAGTCCAGGGAGGAAGAGGAGGAGCCAGATACGCGCACTCAAGACCCGTCATCATCACATAAGAGGAAGAAATCCAGATTGAACATAAATATTGATTCAGGACCGAATGGAGATAGTACGGCACAAACTTCCCAACCTCCTCCAGATACAAGGAGAGTAACACGAAGTTCTGCACGCCAGCGGTAGGTGCTTGGAATGAATATAGTTTCATGGATCCTAGTCTAGGAGTTGTAAAGTGTGCAACAACTGCACTTTTTGGTGTCCTGTGTCAAAATTGTCACCCTATTTAAAATCCGTTGAATGGATTGTTTTGAAGTAGTTGTACACAACTTGAATGTAGAGTGCATTACACAATGTAAGCAAAAAGTAAAAGTTCCTCTTGCAGACTATAGCAGTGGTTCTACGTTCTTGTCGTCCATACATGCAAGGAACGAGCTGTGCCATTGTAAAGATTGACTTTTTCTTTTTGTACCTAGAACAGTTTGATTGTTTTTAGTAGATTTATTATTGTAACTTCAGAGAATAGAGTAAATAGGTTCAGTATCCTAAAAATAACCCAAACTGTAGCCTATTTGTTACTTTTCAATGATGTTATGATGATAGTGAACAAAGTATCATGGCGTCTTTGATTGTGTAAACAGATATGCAGTTCAATGTCGTAAATGTTGTAAATTTTTC

mRNA sequence

GGAAAAATTTTCACGATCCTGCAACCAGCGAACGCGACTTCCAGGCGAAGCAGCGAACACAACGGCGGCGACGGCGAGTACACGGCGGTGGTGACGGCGAGTTCACAACGGCAGCGAACACGACGGCGAGTAGTTCACGATTTTAAGAACCGAACACGATTTCCAATCTTAGTGAGCTTTGAGATAGTGGGTCAAGGGTTCAGAATGCCGGAGCTGAGCTGGAGACATCACACTCTCATTCAAGCGCTACTCACTCGTGGCCCACTCAGAGAGGATCGGTTCCGTTTGGTGTTTACCCGCATCACCGAAAAGAGTCCAGATAATGACCAGCAGCTTTTTAATAGTTACCTCCTGGCAATAAATAAAGCACTTTCATTTGCTCAGTTTGAGCTGCGAGGCTGCAGAAACCAATATGATGGTCGTGTTTATTATGGCTTGGTCAATACTGTATCTGACGAACAGTCCAAACTGGGAACGAAGTATTCAGTTCCACAGATTGCCTTTTATAAAGCCATTGTGAGGACAAATATGATAAAAGGAGGAAAAGTTGAAGCAATTGCACAAGATCCATCTGCTCAAGGTGGAATATCCAACATTGCTGCTCTTCATCTGCAGTTGGAAAATCAGCTGGGGGATACAGGGTCCCAGTCTCAAGTCATACCACCTGCCTTCAAGAATTTCTCAATATCTCTCAAGGAAAAAACAATTGCCGAGCTTGCTCAGGATCAGTGGCTTAATTGCACCCCTGATGGTTGTGTAAATTTGGGAGTCAGATCGTTTCTTGATTTGCGAAGTTGGTTCCGCACTAATGAAGTACCTTCATGTGAAGTGTGCAATGAAGCTGGAGTGAAGGCAGAGTTGTGTGATAATGAAGGTTGCACTGTCCGTGTACATCGATATTGCCTTAAGAAAATGTTATCCAATAAAAAGAGTAAAAGGGCTTGCCCAGGTTGTGGCACTCAATGGCGAGCTACAGCGCCGAATATGGAGTCCAGGGAGGAAGAGGAGGAGCCAGATACGCGCACTCAAGACCCGTCATCATCACATAAGAGGAAGAAATCCAGATTGAACATAAATATTGATTCAGGACCGAATGGAGATAGTACGGCACAAACTTCCCAACCTCCTCCAGATACAAGGAGAGTAACACGAAGTTCTGCACGCCAGCGGTAG

Coding sequence (CDS)

GGAAAAATTTTCACGATCCTGCAACCAGCGAACGCGACTTCCAGGCGAAGCAGCGAACACAACGGCGGCGACGGCGAGTACACGGCGGTGGTGACGGCGAGTTCACAACGGCAGCGAACACGACGGCGAGTAGTTCACGATTTTAAGAACCGAACACGATTTCCAATCTTAGTGAGCTTTGAGATAGTGGGTCAAGGGTTCAGAATGCCGGAGCTGAGCTGGAGACATCACACTCTCATTCAAGCGCTACTCACTCGTGGCCCACTCAGAGAGGATCGGTTCCGTTTGGTGTTTACCCGCATCACCGAAAAGAGTCCAGATAATGACCAGCAGCTTTTTAATAGTTACCTCCTGGCAATAAATAAAGCACTTTCATTTGCTCAGTTTGAGCTGCGAGGCTGCAGAAACCAATATGATGGTCGTGTTTATTATGGCTTGGTCAATACTGTATCTGACGAACAGTCCAAACTGGGAACGAAGTATTCAGTTCCACAGATTGCCTTTTATAAAGCCATTGTGAGGACAAATATGATAAAAGGAGGAAAAGTTGAAGCAATTGCACAAGATCCATCTGCTCAAGGTGGAATATCCAACATTGCTGCTCTTCATCTGCAGTTGGAAAATCAGCTGGGGGATACAGGGTCCCAGTCTCAAGTCATACCACCTGCCTTCAAGAATTTCTCAATATCTCTCAAGGAAAAAACAATTGCCGAGCTTGCTCAGGATCAGTGGCTTAATTGCACCCCTGATGGTTGTGTAAATTTGGGAGTCAGATCGTTTCTTGATTTGCGAAGTTGGTTCCGCACTAATGAAGTACCTTCATGTGAAGTGTGCAATGAAGCTGGAGTGAAGGCAGAGTTGTGTGATAATGAAGGTTGCACTGTCCGTGTACATCGATATTGCCTTAAGAAAATGTTATCCAATAAAAAGAGTAAAAGGGCTTGCCCAGGTTGTGGCACTCAATGGCGAGCTACAGCGCCGAATATGGAGTCCAGGGAGGAAGAGGAGGAGCCAGATACGCGCACTCAAGACCCGTCATCATCACATAAGAGGAAGAAATCCAGATTGAACATAAATATTGATTCAGGACCGAATGGAGATAGTACGGCACAAACTTCCCAACCTCCTCCAGATACAAGGAGAGTAACACGAAGTTCTGCACGCCAGCGGTAG

Protein sequence

GKIFTILQPANATSRRSSEHNGGDGEYTAVVTASSQRQRTRRRVVHDFKNRTRFPILVSFEIVGQGFRMPELSWRHHTLIQALLTRGPLREDRFRLVFTRITEKSPDNDQQLFNSYLLAINKALSFAQFELRGCRNQYDGRVYYGLVNTVSDEQSKLGTKYSVPQIAFYKAIVRTNMIKGGKVEAIAQDPSAQGGISNIAALHLQLENQLGDTGSQSQVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGCVNLGVRSFLDLRSWFRTNEVPSCEVCNEAGVKAELCDNEGCTVRVHRYCLKKMLSNKKSKRACPGCGTQWRATAPNMESREEEEEPDTRTQDPSSSHKRKKSRLNINIDSGPNGDSTAQTSQPPPDTRRVTRSSARQR

Homology

[Close]

BLAST of Spg000459 vs. NCBI nr
Match: XP_022995422.1 (non-structural maintenance of chromosomes element 1 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 557.0 bits (1434), Expect = 1.3e-154
Identity = 279/324 (86.11%), Postives = 292/324 (90.12%), Query Frame = 0


Query: 69  MPELSWRHHTLIQALLTRGPLREDRFRLVFTRITEKSPDNDQQLFNSYLLAINKALSFAQ 128
           M ELSWRHHTLIQALL RGPLRED F L+FTRITEKSPDND+QLFN+YLL +NKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60

Query: 129 FELRGCRNQYDGRVYYGLVNTVSDEQSKLGTKYSVPQIAFYKAIVRTNMIKGGKVEAIAQ 188
           FELRGCRNQYDGRVYYGLVN VSDEQSKLGTKYSVPQIAFYKAI          VEAIAQ
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAI----------VEAIAQ 120

Query: 189 DPSAQGGISNIAALHLQLENQLGDTGSQSQVIPPAFKNFSISLKEKTIAELAQDQWLNCT 248
           DPSAQGGISNIAALHLQLENQLGD GSQS VIPPAFKNFSISLKEKTIAELAQDQWLNCT
Sbjct: 121 DPSAQGGISNIAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCT 180

Query: 249 PDGCVNLGVRSFLDLRSWFRTNEVPSCEVCNEAGVKAELCDNEGCTVRVHRYCLKKMLSN 308
           PDG VNLGVRSFLDLRSWFRTN++PSCEVCNEAGVKAELC NEGCTVRVHRYCLKKMLSN
Sbjct: 181 PDGFVNLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSN 240

Query: 309 KKSKRACPGCGTQWRATAPNMESREEEEEPDTRTQDPSSSHKRKKSRLNINIDSGPNGDS 368
           KKSKRACP CGTQWR+TAPN+E +EEE+EPD R Q  SSSHKRKK+RLN +IDSGPNGDS
Sbjct: 241 KKSKRACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDS 300

Query: 369 --TAQTSQPPPDTRRVTRSSARQR 391
              AQ SQPPPDTRR+TRSSA QR
Sbjct: 301 VAAAQASQPPPDTRRITRSSAHQR 314

[Close]

BLAST of Spg000459 vs. NCBI nr
Match: XP_022995424.1 (non-structural maintenance of chromosomes element 1 homolog isoform X2 [Cucurbita maxima])

HSP 1 Score: 557.0 bits (1434), Expect = 1.3e-154
Identity = 279/324 (86.11%), Postives = 292/324 (90.12%), Query Frame = 0


Query: 69  MPELSWRHHTLIQALLTRGPLREDRFRLVFTRITEKSPDNDQQLFNSYLLAINKALSFAQ 128
           M ELSWRHHTLIQALL RGPLRED F L+FTRITEKSPDND+QLFN+YLL +NKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60

Query: 129 FELRGCRNQYDGRVYYGLVNTVSDEQSKLGTKYSVPQIAFYKAIVRTNMIKGGKVEAIAQ 188
           FELRGCRNQYDGRVYYGLVN VSDEQSKLGTKYSVPQIAFYKAI          VEAIAQ
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAI----------VEAIAQ 120

Query: 189 DPSAQGGISNIAALHLQLENQLGDTGSQSQVIPPAFKNFSISLKEKTIAELAQDQWLNCT 248
           DPSAQGGISNIAALHLQLENQLGD GSQS VIPPAFKNFSISLKEKTIAELAQDQWLNCT
Sbjct: 121 DPSAQGGISNIAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCT 180

Query: 249 PDGCVNLGVRSFLDLRSWFRTNEVPSCEVCNEAGVKAELCDNEGCTVRVHRYCLKKMLSN 308
           PDG VNLGVRSFLDLRSWFRTN++PSCEVCNEAGVKAELC NEGCTVRVHRYCLKKMLSN
Sbjct: 181 PDGFVNLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSN 240

Query: 309 KKSKRACPGCGTQWRATAPNMESREEEEEPDTRTQDPSSSHKRKKSRLNINIDSGPNGDS 368
           KKSKRACP CGTQWR+TAPN+E +EEE+EPD R Q  SSSHKRKK+RLN +IDSGPNGDS
Sbjct: 241 KKSKRACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDS 300

Query: 369 --TAQTSQPPPDTRRVTRSSARQR 391
              AQ SQPPPDTRR+TRSSA QR
Sbjct: 301 VAAAQASQPPPDTRRITRSSAHQR 314

[Close]

BLAST of Spg000459 vs. NCBI nr
Match: XP_023533198.1 (non-structural maintenance of chromosomes element 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 555.8 bits (1431), Expect = 2.9e-154
Identity = 278/324 (85.80%), Postives = 292/324 (90.12%), Query Frame = 0


Query: 69  MPELSWRHHTLIQALLTRGPLREDRFRLVFTRITEKSPDNDQQLFNSYLLAINKALSFAQ 128
           M ELSWRHHTLIQALL RGPLRED F L+FTRITEKSPDND+QLFN+YLL +NKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60

Query: 129 FELRGCRNQYDGRVYYGLVNTVSDEQSKLGTKYSVPQIAFYKAIVRTNMIKGGKVEAIAQ 188
           FELRGCRNQYDGRVYYGLVN VSDEQSKLGTKYSVPQIAFYKAI          VEAIAQ
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAI----------VEAIAQ 120

Query: 189 DPSAQGGISNIAALHLQLENQLGDTGSQSQVIPPAFKNFSISLKEKTIAELAQDQWLNCT 248
           DPSAQGGISNIAALHLQLENQLGD GSQS VIPPAFKNFSISLKEKTIAELAQDQWLNCT
Sbjct: 121 DPSAQGGISNIAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCT 180

Query: 249 PDGCVNLGVRSFLDLRSWFRTNEVPSCEVCNEAGVKAELCDNEGCTVRVHRYCLKKMLSN 308
           PDG VNLGVRSFLDLRSWFRTN++PSCEVCNEAGVKAELC NEGCTVRVHRYCLKKMLSN
Sbjct: 181 PDGFVNLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSN 240

Query: 309 KKSKRACPGCGTQWRATAPNMESREEEEEPDTRTQDPSSSHKRKKSRLNINIDSGPNGDS 368
           KKSKRACP CGTQWR+TAPN+E +EEE+EPD R Q  SSSHKRKK+RLN +IDSGPNGDS
Sbjct: 241 KKSKRACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDS 300

Query: 369 --TAQTSQPPPDTRRVTRSSARQR 391
              AQ SQPPPDTRR+TRS+A QR
Sbjct: 301 VAAAQASQPPPDTRRITRSTAHQR 314

[Close]

BLAST of Spg000459 vs. NCBI nr
Match: KAG7035803.1 (Non-structural maintenance of chromosomes element 1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 552.0 bits (1421), Expect = 4.2e-153
Identity = 277/324 (85.49%), Postives = 290/324 (89.51%), Query Frame = 0


Query: 69  MPELSWRHHTLIQALLTRGPLREDRFRLVFTRITEKSPDNDQQLFNSYLLAINKALSFAQ 128
           M ELSWRHHTLIQALL RGPLRED F L+FTRITEKSPDND+QLFN+YLL +NKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60

Query: 129 FELRGCRNQYDGRVYYGLVNTVSDEQSKLGTKYSVPQIAFYKAIVRTNMIKGGKVEAIAQ 188
           FELRGCRNQYDGRVYYGLVN VSDEQSKLGTKYSVPQIAFYKAI          VEAIAQ
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAI----------VEAIAQ 120

Query: 189 DPSAQGGISNIAALHLQLENQLGDTGSQSQVIPPAFKNFSISLKEKTIAELAQDQWLNCT 248
           DPSAQGGISNIAALHLQLENQLGD GSQS VIPPAFKNFSISLKEKTIAELAQDQWLNCT
Sbjct: 121 DPSAQGGISNIAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCT 180

Query: 249 PDGCVNLGVRSFLDLRSWFRTNEVPSCEVCNEAGVKAELCDNEGCTVRVHRYCLKKMLSN 308
           PDG VNLGVRSFLDLRSWFRTN++PSCEVCNEAGVKAELC NEGCTVRVH YCLKKMLSN
Sbjct: 181 PDGFVNLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHPYCLKKMLSN 240

Query: 309 KKSKRACPGCGTQWRATAPNMESREEEEEPDTRTQDPSSSHKRKKSRLNINIDSGPNGDS 368
           KKSKRACP CGTQWR+TAPN+E +EEE+EPD R Q  SSSHKRKK+RLN +IDSGPNGDS
Sbjct: 241 KKSKRACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDS 300

Query: 369 --TAQTSQPPPDTRRVTRSSARQR 391
              AQ SQPPPDTRR+TRSSA  R
Sbjct: 301 MAAAQASQPPPDTRRITRSSAHPR 314

[Close]

BLAST of Spg000459 vs. NCBI nr
Match: XP_022957637.1 (non-structural maintenance of chromosomes element 1 homolog [Cucurbita moschata])

HSP 1 Score: 551.6 bits (1420), Expect = 5.5e-153
Identity = 276/324 (85.19%), Postives = 291/324 (89.81%), Query Frame = 0


Query: 69  MPELSWRHHTLIQALLTRGPLREDRFRLVFTRITEKSPDNDQQLFNSYLLAINKALSFAQ 128
           M ELSWRHHTLIQALL RGPLRED F L+FTRITEKSP+ND+QLFN+YLL +NKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPENDRQLFNNYLLTMNKALSFAQ 60

Query: 129 FELRGCRNQYDGRVYYGLVNTVSDEQSKLGTKYSVPQIAFYKAIVRTNMIKGGKVEAIAQ 188
           FELRGCRNQYDGRVYYGLVN VSDEQSKLGTKYSVPQIAFYKAI          VEAIAQ
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAI----------VEAIAQ 120

Query: 189 DPSAQGGISNIAALHLQLENQLGDTGSQSQVIPPAFKNFSISLKEKTIAELAQDQWLNCT 248
           DPSA+GGISNIAALHLQLENQLGD GSQS VIPPAFKNFSISLKEKTIAELAQDQWLNCT
Sbjct: 121 DPSARGGISNIAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCT 180

Query: 249 PDGCVNLGVRSFLDLRSWFRTNEVPSCEVCNEAGVKAELCDNEGCTVRVHRYCLKKMLSN 308
           PDG VNLGVRSFLDLRSWFRTN++PSCEVCNEAGVKAELC NEGCTVRVHRYCLKKMLSN
Sbjct: 181 PDGFVNLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSN 240

Query: 309 KKSKRACPGCGTQWRATAPNMESREEEEEPDTRTQDPSSSHKRKKSRLNINIDSGPNGDS 368
           KKSKRACP CGTQWR+TAPN+E +EEE+EPD R Q  SSSHKRKK+RLN +IDSGPNGDS
Sbjct: 241 KKSKRACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDS 300

Query: 369 --TAQTSQPPPDTRRVTRSSARQR 391
              AQ SQPPPDTRR+TRSSA  R
Sbjct: 301 MAAAQASQPPPDTRRITRSSAHPR 314

[Close]

BLAST of Spg000459 vs. ExPASy Swiss-Prot
Match: Q07913 (Non-structural maintenance of chromosomes element 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NSE1 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.0e-04
Identity = 37/167 (22.16%), Postives = 69/167 (41.32%), Query Frame = 0


Query: 143 YYGLVNTVSDEQSKLGTKYSVPQIAFYKAIVRTNMIKGGKVEAIAQDPS----------- 202
           ++  VN  S E++KL T+++  +I F K  +   MI G   E I + P+           
Sbjct: 132 FFVYVNLASTEETKLATRFNQNEIEFMKWAIEQFMISG---ETIVEGPALETSIIVKEVN 191

Query: 203 ----AQGGISNIAALHLQLENQLGDTGSQSQVIPPAFKNFSISLKEKTIAELAQDQWLNC 262
               A  G SN+A         +G T          F+  + +  E  +  L + +W   
Sbjct: 192 RILVAATGDSNLAKWRKFSTFTVGSTNLFQ------FQELTATDIEDLLLRLCELKWFYR 251

Query: 263 TPDGCVNLGVRSFLDLRSWFRT-NEVPSCEVCNEAGVKAELCDNEGC 294
           T +G   + +R   +L  +  +   + +C+ C++  ++   C NE C
Sbjct: 252 TQEGKFGIDLRCIAELEEYLTSMYNLNTCQNCHKLAIQGVRCGNESC 289

[Close]

BLAST of Spg000459 vs. ExPASy TrEMBL
Match: A0A6J1JYV1 (Non-structural maintenance of chromosomes element 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490968 PE=3 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 6.3e-155
Identity = 279/324 (86.11%), Postives = 292/324 (90.12%), Query Frame = 0


Query: 69  MPELSWRHHTLIQALLTRGPLREDRFRLVFTRITEKSPDNDQQLFNSYLLAINKALSFAQ 128
           M ELSWRHHTLIQALL RGPLRED F L+FTRITEKSPDND+QLFN+YLL +NKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60

Query: 129 FELRGCRNQYDGRVYYGLVNTVSDEQSKLGTKYSVPQIAFYKAIVRTNMIKGGKVEAIAQ 188
           FELRGCRNQYDGRVYYGLVN VSDEQSKLGTKYSVPQIAFYKAI          VEAIAQ
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAI----------VEAIAQ 120

Query: 189 DPSAQGGISNIAALHLQLENQLGDTGSQSQVIPPAFKNFSISLKEKTIAELAQDQWLNCT 248
           DPSAQGGISNIAALHLQLENQLGD GSQS VIPPAFKNFSISLKEKTIAELAQDQWLNCT
Sbjct: 121 DPSAQGGISNIAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCT 180

Query: 249 PDGCVNLGVRSFLDLRSWFRTNEVPSCEVCNEAGVKAELCDNEGCTVRVHRYCLKKMLSN 308
           PDG VNLGVRSFLDLRSWFRTN++PSCEVCNEAGVKAELC NEGCTVRVHRYCLKKMLSN
Sbjct: 181 PDGFVNLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSN 240

Query: 309 KKSKRACPGCGTQWRATAPNMESREEEEEPDTRTQDPSSSHKRKKSRLNINIDSGPNGDS 368
           KKSKRACP CGTQWR+TAPN+E +EEE+EPD R Q  SSSHKRKK+RLN +IDSGPNGDS
Sbjct: 241 KKSKRACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDS 300

Query: 369 --TAQTSQPPPDTRRVTRSSARQR 391
              AQ SQPPPDTRR+TRSSA QR
Sbjct: 301 VAAAQASQPPPDTRRITRSSAHQR 314

[Close]

BLAST of Spg000459 vs. ExPASy TrEMBL
Match: A0A6J1K5P2 (Non-structural maintenance of chromosomes element 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490968 PE=3 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 6.3e-155
Identity = 279/324 (86.11%), Postives = 292/324 (90.12%), Query Frame = 0


Query: 69  MPELSWRHHTLIQALLTRGPLREDRFRLVFTRITEKSPDNDQQLFNSYLLAINKALSFAQ 128
           M ELSWRHHTLIQALL RGPLRED F L+FTRITEKSPDND+QLFN+YLL +NKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60

Query: 129 FELRGCRNQYDGRVYYGLVNTVSDEQSKLGTKYSVPQIAFYKAIVRTNMIKGGKVEAIAQ 188
           FELRGCRNQYDGRVYYGLVN VSDEQSKLGTKYSVPQIAFYKAI          VEAIAQ
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAI----------VEAIAQ 120

Query: 189 DPSAQGGISNIAALHLQLENQLGDTGSQSQVIPPAFKNFSISLKEKTIAELAQDQWLNCT 248
           DPSAQGGISNIAALHLQLENQLGD GSQS VIPPAFKNFSISLKEKTIAELAQDQWLNCT
Sbjct: 121 DPSAQGGISNIAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCT 180

Query: 249 PDGCVNLGVRSFLDLRSWFRTNEVPSCEVCNEAGVKAELCDNEGCTVRVHRYCLKKMLSN 308
           PDG VNLGVRSFLDLRSWFRTN++PSCEVCNEAGVKAELC NEGCTVRVHRYCLKKMLSN
Sbjct: 181 PDGFVNLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSN 240

Query: 309 KKSKRACPGCGTQWRATAPNMESREEEEEPDTRTQDPSSSHKRKKSRLNINIDSGPNGDS 368
           KKSKRACP CGTQWR+TAPN+E +EEE+EPD R Q  SSSHKRKK+RLN +IDSGPNGDS
Sbjct: 241 KKSKRACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDS 300

Query: 369 --TAQTSQPPPDTRRVTRSSARQR 391
              AQ SQPPPDTRR+TRSSA QR
Sbjct: 301 VAAAQASQPPPDTRRITRSSAHQR 314

[Close]

BLAST of Spg000459 vs. ExPASy TrEMBL
Match: A0A6J1GZN9 (Non-structural maintenance of chromosomes element 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111459112 PE=3 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 2.6e-153
Identity = 276/324 (85.19%), Postives = 291/324 (89.81%), Query Frame = 0


Query: 69  MPELSWRHHTLIQALLTRGPLREDRFRLVFTRITEKSPDNDQQLFNSYLLAINKALSFAQ 128
           M ELSWRHHTLIQALL RGPLRED F L+FTRITEKSP+ND+QLFN+YLL +NKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPENDRQLFNNYLLTMNKALSFAQ 60

Query: 129 FELRGCRNQYDGRVYYGLVNTVSDEQSKLGTKYSVPQIAFYKAIVRTNMIKGGKVEAIAQ 188
           FELRGCRNQYDGRVYYGLVN VSDEQSKLGTKYSVPQIAFYKAI          VEAIAQ
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAI----------VEAIAQ 120

Query: 189 DPSAQGGISNIAALHLQLENQLGDTGSQSQVIPPAFKNFSISLKEKTIAELAQDQWLNCT 248
           DPSA+GGISNIAALHLQLENQLGD GSQS VIPPAFKNFSISLKEKTIAELAQDQWLNCT
Sbjct: 121 DPSARGGISNIAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCT 180

Query: 249 PDGCVNLGVRSFLDLRSWFRTNEVPSCEVCNEAGVKAELCDNEGCTVRVHRYCLKKMLSN 308
           PDG VNLGVRSFLDLRSWFRTN++PSCEVCNEAGVKAELC NEGCTVRVHRYCLKKMLSN
Sbjct: 181 PDGFVNLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSN 240

Query: 309 KKSKRACPGCGTQWRATAPNMESREEEEEPDTRTQDPSSSHKRKKSRLNINIDSGPNGDS 368
           KKSKRACP CGTQWR+TAPN+E +EEE+EPD R Q  SSSHKRKK+RLN +IDSGPNGDS
Sbjct: 241 KKSKRACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDS 300

Query: 369 --TAQTSQPPPDTRRVTRSSARQR 391
              AQ SQPPPDTRR+TRSSA  R
Sbjct: 301 MAAAQASQPPPDTRRITRSSAHPR 314

[Close]

BLAST of Spg000459 vs. ExPASy TrEMBL
Match: A0A6J1DI86 (Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charantia OX=3673 GN=LOC111021178 PE=3 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 8.5e-152
Identity = 278/323 (86.07%), Postives = 292/323 (90.40%), Query Frame = 0


Query: 69  MPELSWRHHTLIQALLTRGPLREDRFRLVFTRITEKSPDNDQQLFNSYLLAINKALSFAQ 128
           M ELSWRHHTLIQALL RGPLRED+F L+FTRIT KSPDNDQQLFN+YLLAINKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDQFHLMFTRITGKSPDNDQQLFNNYLLAINKALSFAQ 60

Query: 129 FELRGCRNQYDGRVYYGLVNTVSDEQSKLGTKYSVPQIAFYKAIVRTNMIKGGKVEAIAQ 188
           FELRGCRNQYDGRVYYGLVN VSDEQSKLGTKYSVPQIAFYKAI          VEAIAQ
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAI----------VEAIAQ 120

Query: 189 DPSAQGGISNIAALHLQLENQLGDTGSQ-SQVIPPAFKNFSISLKEKTIAELAQDQWLNC 248
           DPSAQGGISNIAALHLQLENQLGD GSQ SQVIPPAFKNFSISLKEKTIAELAQDQWLNC
Sbjct: 121 DPSAQGGISNIAALHLQLENQLGDMGSQSSQVIPPAFKNFSISLKEKTIAELAQDQWLNC 180

Query: 249 TPDGCVNLGVRSFLDLRSWFRTNEVPSCEVCNEAGVKAELCDNEGCTVRVHRYCLKKMLS 308
           TPDG VNLGVRSFLDLRSWFRTN++PSCEVCNEAGVKAELCDNEGCTVRVH+YCLKKMLS
Sbjct: 181 TPDGFVNLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCDNEGCTVRVHQYCLKKMLS 240

Query: 309 NKKSKRACPGCGTQWRATAPNMESREEEEEPDTRTQDPSSSHKRKKSRLNINIDSGPNGD 368
           NKKSKRACPGCGT+WR+T  NMES+EEE+EPD RTQ  SSS +RKKSRLNI++DS  NG 
Sbjct: 241 NKKSKRACPGCGTKWRSTVTNMESKEEEDEPDRRTQGQSSSQRRKKSRLNIDMDSDSNG- 300

Query: 369 STAQTSQPPPDTRRVTRSSARQR 391
             A  SQPPP+TRRVTRSSARQR
Sbjct: 301 --ASASQPPPETRRVTRSSARQR 310

[Close]

BLAST of Spg000459 vs. ExPASy TrEMBL
Match: A0A6J1DJY3 (Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charantia OX=3673 GN=LOC111021178 PE=3 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 8.5e-152
Identity = 278/323 (86.07%), Postives = 292/323 (90.40%), Query Frame = 0


Query: 69  MPELSWRHHTLIQALLTRGPLREDRFRLVFTRITEKSPDNDQQLFNSYLLAINKALSFAQ 128
           M ELSWRHHTLIQALL RGPLRED+F L+FTRIT KSPDNDQQLFN+YLLAINKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDQFHLMFTRITGKSPDNDQQLFNNYLLAINKALSFAQ 60

Query: 129 FELRGCRNQYDGRVYYGLVNTVSDEQSKLGTKYSVPQIAFYKAIVRTNMIKGGKVEAIAQ 188
           FELRGCRNQYDGRVYYGLVN VSDEQSKLGTKYSVPQIAFYKAI          VEAIAQ
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAI----------VEAIAQ 120

Query: 189 DPSAQGGISNIAALHLQLENQLGDTGSQ-SQVIPPAFKNFSISLKEKTIAELAQDQWLNC 248
           DPSAQGGISNIAALHLQLENQLGD GSQ SQVIPPAFKNFSISLKEKTIAELAQDQWLNC
Sbjct: 121 DPSAQGGISNIAALHLQLENQLGDMGSQSSQVIPPAFKNFSISLKEKTIAELAQDQWLNC 180

Query: 249 TPDGCVNLGVRSFLDLRSWFRTNEVPSCEVCNEAGVKAELCDNEGCTVRVHRYCLKKMLS 308
           TPDG VNLGVRSFLDLRSWFRTN++PSCEVCNEAGVKAELCDNEGCTVRVH+YCLKKMLS
Sbjct: 181 TPDGFVNLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCDNEGCTVRVHQYCLKKMLS 240

Query: 309 NKKSKRACPGCGTQWRATAPNMESREEEEEPDTRTQDPSSSHKRKKSRLNINIDSGPNGD 368
           NKKSKRACPGCGT+WR+T  NMES+EEE+EPD RTQ  SSS +RKKSRLNI++DS  NG 
Sbjct: 241 NKKSKRACPGCGTKWRSTVTNMESKEEEDEPDRRTQGQSSSQRRKKSRLNIDMDSDSNG- 300

Query: 369 STAQTSQPPPDTRRVTRSSARQR 391
             A  SQPPP+TRRVTRSSARQR
Sbjct: 301 --ASASQPPPETRRVTRSSARQR 310

[Close]

BLAST of Spg000459 vs. TAIR 10
Match: AT5G21140.1 (embryo defective 1379 )

HSP 1 Score: 327.0 bits (837), Expect = 2.0e-89
Identity = 174/329 (52.89%), Postives = 225/329 (68.39%), Query Frame = 0


Query: 69  MPELSWRHHTLIQALLTRGPLREDRFRLVFTRITEKSPDNDQQLFNSYLLAINKALSFAQ 128
           M  LSW+HHTLIQAL++RGPL+E  F  +FT +T ++P   +++F+ YLL INK LS+  
Sbjct: 1   MASLSWKHHTLIQALISRGPLKEKEFHSIFTAVTGRNPVTVKKIFDKYLLEINKELSYVH 60

Query: 129 FELRGCRNQYDGRVYYGLVNTVSDEQSKLGTKYSVPQIAFYKAIVRTNMIKGGKVEAIAQ 188
           FEL+ CR+QYDG+V YG+VN V+D+QSKLGTKYSVPQIAF+K I          +EAIAQ
Sbjct: 61  FELKACRDQYDGQVCYGVVNNVADDQSKLGTKYSVPQIAFFKGI----------IEAIAQ 120

Query: 189 DPSAQGGISNIAALHLQLENQLGDTGSQS-QVIPPAFKNFSISLKEKTIAELAQDQWLNC 248
           D +AQG IS+  AL+++LENQ+    S S Q +PPAFKNFS++ KEKT+ EL +D+WL  
Sbjct: 121 DEAAQGCISSFDALNIRLENQISSEASSSQQQVPPAFKNFSMTQKEKTLDELVRDKWLCR 180

Query: 249 TPDGCVNLGVRSFLDLRSWFRTNEVPSCEVCNEAGVKAELCDNEGCTVRVHRYCLKKMLS 308
           T +  + LG+RS LDLRSWFR N+VPSCEVCNEAGVKA+LC  EGC VR+H+YCLKK+LS
Sbjct: 181 TRERNIGLGIRSLLDLRSWFRNNDVPSCEVCNEAGVKADLCPTEGCPVRIHKYCLKKLLS 240

Query: 309 NKKSKRACPGCGTQW-----RATAPNMESREEEEEPDTRTQDPSSSHKRKKSRLNINIDS 368
            +  KR C GCG  W       T    E+  +EEE +T+   P +  +R++       DS
Sbjct: 241 QRDDKR-CSGCGKPWPLSKITKTEAAEEAMNDEEESETQATAPKAKRRRQQR------DS 300

Query: 369 GPNGDSTAQ-TSQPPPDTRRVTRSSARQR 391
             NG S A   S    +TRRVTRS    R
Sbjct: 301 TENGSSQASLASTSGANTRRVTRSVGHSR 312

The following BLAST results are available for this feature:

BLAST of Spg000459 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022995422.1	1.3e-154	86.11	non-structural maintenance of chromosomes element 1 homolog isoform X1 [Cucurbit...	[more]
XP_022995424.1	1.3e-154	86.11	non-structural maintenance of chromosomes element 1 homolog isoform X2 [Cucurbit...	[more]
XP_023533198.1	2.9e-154	85.80	non-structural maintenance of chromosomes element 1 homolog [Cucurbita pepo subs...	[more]
KAG7035803.1	4.2e-153	85.49	Non-structural maintenance of chromosomes element 1-like protein [Cucurbita argy...	[more]
XP_022957637.1	5.5e-153	85.19	non-structural maintenance of chromosomes element 1 homolog [Cucurbita moschata]	[more]

BLAST of Spg000459 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07913	2.0e-04	22.16	Non-structural maintenance of chromosomes element 1 OS=Saccharomyces cerevisiae ...	[more]

BLAST of Spg000459 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JYV1	6.3e-155	86.11	Non-structural maintenance of chromosomes element 1 homolog OS=Cucurbita maxima ...	[more]
A0A6J1K5P2	6.3e-155	86.11	Non-structural maintenance of chromosomes element 1 homolog OS=Cucurbita maxima ...	[more]
A0A6J1GZN9	2.6e-153	85.19	Non-structural maintenance of chromosomes element 1 homolog OS=Cucurbita moschat...	[more]
A0A6J1DI86	8.5e-152	86.07	Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charant...	[more]
A0A6J1DJY3	8.5e-152	86.07	Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charant...	[more]

BLAST of Spg000459 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21140.1	2.0e-89	52.89	embryo defective 1379	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 273..333 e-value: 4.1E-11 score: 44.2
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 152..271 e-value: 8.2E-14 score: 53.6
None	No IPR available	GENE3D	3.90.1150.220		coord: 73..150 e-value: 2.2E-14 score: 55.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 358..390
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 328..357
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..390
None	No IPR available	PANTHER	PTHR20973:SF1	BNAANNG27900D PROTEIN	coord: 69..388
IPR011513	Non-structural maintenance of chromosomes element 1	PFAM	PF07574	SMC_Nse1	coord: 76..263 e-value: 5.5E-40 score: 137.4
IPR011513	Non-structural maintenance of chromosomes element 1	PANTHER	PTHR20973	NON-SMC ELEMENT 1-RELATED	coord: 69..388
IPR014857	Zinc finger, RING-like	PFAM	PF08746	zf-RING-like	coord: 275..318 e-value: 1.6E-8 score: 34.7
IPR014857	Zinc finger, RING-like	CDD	cd16493	RING-CH-C4HC3_NSE1	coord: 274..320 e-value: 6.49168E-14 score: 63.6029

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000459.1	Spg000459.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006301	postreplication repair
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030915	Smc5-Smc6 complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity