Spg000383 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000383
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	50S ribosomal protein L18
Location	scaffold8: 45540298 .. 45545743 (+)
RNA-Seq Expression	Spg000383
Synteny	Spg000383

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATGCGGATCGAGGGTTCGAGGTTCTGTGATCGGGAGGCTGAGGCTTCTGATTTATAGGACTGCTCCACGTTTCCACGTGTCCTTCACGAACCTCTACTTCTGGTTGCGTAGCCGACTGAATTTGTTTTGTGAGGGCAAATTAGAGAATTCACCTCCTGTTGTCATTGGGCTAACCACGTGCTCTACTTGGCCCAATTGGATGATTATTCTTTCACACATTATGAAGCCCATGGGCTTTTTTTTTAATTCATGAAGCCCGTGGGCTTGTAGTTTAAAATTTGAAACTTCTTTAAAGAAAGTTACTTACATGCTTATTCATCAATAATTGACGGGGCAACAAGAAAAATGGCTAAAAATAAATAGGTGGCTTGAAAAATGGCTACAAAAGTTTATAAATTAAATAGATGGCTAAACGTTTTACTGATTAATAAAATCCTATTTGTAAAAGACACAAATGCCCCCCAACAAACTGCCTAACGTGTTCCTAACGTTAAAAATTAAAATCAGATTTTATGAGAGATAAAATACACCCCTAAAAATAAGTTGGAGAAATTTTAGGAAGCTTGAAATTCAAAAATTAAAGAAACAAAAACTAGTTTCAAAATCTAGAAAAAGTTGTATCATATTGTTACTACTGAAAAAAATTGTTTCCCGGAAAAAGGAGTCGATACCTTTATTTTGGAAGGAATACAATGCTCAACCCCCAGTAGAGAGAAACACCTTCGGACTACGTTAATTGGAAAACACAGTCCTCTCAATAAGAGGATATACTACCTGCAAATAAGAAAACCTTAGAAAACAACTTAGTAAATGTTGTACAAAATTGGCCATGAAACAACTAACAAAAAAAGAACCTTAAAGGCTGCCATTATGACCTGTCAAATCACCGCCCACCCTCCCACCAGAACGCCACCATGCATTGCGCCACCCCCCGTCGGTCCATCTTCATCTCCCTCCCCTCGAAAATCTTGAAAGACTTAATCCTCCATTTCCCACCATTTTTCACCCCCAACACAGAGTGTATACCAATCCCTACCTCTCGTATCGCGCCGACGACCCACATCCGCCGTGCCGGCGACCTTCTTCCGCCACGCCGTCGAGACTCCTGCTCGCCCCACATCCTCCATCGATTCTCCTTCTGCGCGAGGACTGTACAATTTCTCAGAAATTCAAACTAAGGTAACGGCTTCATTCTCATTCCCTTATATTATAAACAAACTGATACATTCCCCCAAGATTTTAGGGATTTTGTTTCTTCCAAGCAATCCGAGAATATTACGCTCTATTGTAAGCAGAGACCAAAAAAGACTAAACCCGTGGAGGTAAGACTATGTATTTACTCTTTAGGTTGTGTAAAACATGCTGTAATTACTCGTGTAATTGTGTTAAAAAACAGGAAGAAGTTGACGCAAGCGCCGATACGGGGGAAGACCATTCTATTGAAGATGATTACTCCTCAAGCGATAGCGGAGACGAAGGAGTTAGCAAGAAAAAGAAAACGGTAGACAAAAAGGTAAAAAAGATCACCCACATCATCTCCCTTGTGAATTACAAATTAGAGAATTAAACTCCCTAATTAACATCTAGGATGCGAAGAGCCCAAAGGGAAGGACAAACGAACAAAAAGGGATGAAAGTGAGGAGGTCGAATCCACCAGAGCGGTATGTACTAATAAATACTATTCCATCATTGTTGCAAACTCCTCTGGAAAGTATGTTGTGGTGTGGTCATATGAAAGTGTGTGAGAGGAGTTATATACCCCCCTGCACCTTACAATCTATGTATTGGCAAGCCTGTGTACATTGTCTGCCTGTGAACGTGTATGTATTAGTATATACATCCATGATCTCATACATTTATATACTGATATGTGCAACTACTATCTCGTACATCTATATACTGATATGCTCGTACGTACGTGTGTTTGAACAGTTATATACCCTCCATTGTCTGTTTGTGAACGTGTATGTATTAGTATATACATATATGATATCGTACGTCTGTTGTCTGTGTAGATTGAACTGTTACATACAACTATGGAATTGTTTGATGTTTTTTTTTGGGGTAATCCATCTGTTAACTGCTTCATGCCGCTGAAAAAGATAATTTTTTACCGTTAGAAAGCCTAAGCCTGAAAAATAGGTAAATCAGGATCAAAACAAACCGCCAACCGATCCCATGTAAGTAGGGATCCATCCACCACGCAAAAAGGGGACGTTTGCAACAAAAAAGACTGTTAACGGCGTTTGTATATAGTCGTATATACCAGGGGTAAAAACGTCCAAAAAAAGCCAGGAAACGGTTCCTAAAATTTCGGTAGCCACGCCTACAAAATCCGGACTTCCGTAGCCAAAAATCAATAATGCTTTTTTTTTGTAGTCATTTAGCACAATTTCCCATAATTGACCGTTCAAAATCTCTAACCATTCGGGTTAAGCTCCCTCTTGAGTTACAACTCTTCTTATTTTCTCATGCATTCTCGAATGTTGCAACCTTTATTAACACGTTCAAATATTTTGCTTTAAATTGATAAAAAATAAAAATAAAAAGAGACAACAAAGTTGAGTTTTTTAATGGGAGGGAGATTCGAACCACAGACTTTGTGATTATCAGCACAACTTTATGTAAGTTGAGCCAAACTCTTGTTGGCTAAATTGTTGTTTATTTTCATAAGCAACAAAAACAATAAAACATGTTATATGAAAAGATACAAATATACAAGAATGATTAAGAATAAAATATTAGAATAAAATGATTAAAGATGAATTTGAGAATTACCTAATACATTAATTTGTATATATGATCTTTTTGAAAAAGAAAAAAAAAAGAAAAATAAAACTCAGGTCACTTTGTAAATTAAAAACAAATAAAAATAGATAAAAGAACTATTTCCTTTCACGCTGACGTGCTCCACGCCACCTCCTTCTTCTTGTTCTTCAGGCCGTCTCCTCCGTTTCAGCAGCCCAGTGTCGCCGCCGCAGCCTCCTTCACAGCGGTTCTGCACTGATTTTCTACTCTATTTTTGTATACTGGTATTCTCTCATTCTACATCTATGTCTTTCTTCTCACTTGAAAGATCTTTTTTTTTTAAACAACAATAGCCAAATAGCATCGAAAAAAAAGCTCTGCGGCAAATTGGGACGTGGTTTGTGTTTGGTCGTTCCGATTCTGGGTGTTCCACTATTTCGATTTGTTGCATATGTATTTCAATTGAGGCTCTGATGATCTGTATATCTCTTTGGTCTAGGCTGAAATTACTTTTTTTCTGGTACCATGAATTTTCCAGCATTTCTCTTCTTTATTTATCAGAGAATCAGTCGAAGTAATCTATCGCATTATTCAATTTTCTTTTAATTCCTTGCTTTGATGAATTCTCTTTTATATATATCGATATAGATATAGATGCATACCCTTATAATATGTTTGTTTCCACATTCAGTGATTTCATCACATTTCCAATCTGCATCCTTCCTAGTTTGAGCTGGATTCAACTTCTTTCTCAAGGGTTTCAATTTATTTTCCTTTTGAAATCTTCTTTTATCGTTAATTTGCACTCTCTATATGTTGAATTGAAGCTGAATTGCAGCCAAATCAGCTTTCTTTCAAGTTAACACATCTATCATGATGAATATAGTGGAGGTTTTCATTTGCTGGTTCTATAAGCTTTACTGTTTCCTTATGAACTTGAGTAATGGCTGATGAAATATCTTATTGATGAAATTTGGAGGATGGAAAGCCTTTATCTTTGTGCAATTTTTGCCAATAATTTATTCTGTTACTTAGCAATTAAGTGTATGATATTCATCGACTTGTTTGTTTGTTTAACCGTTTGTTGCTCCTTCATTGTACACTTCTTCCAATCTTTCGGTTTGTTCTCGGTGTGAATCTACCATTCAATTGTAACCTGTAAGGGATGCCTTTTTAATGTTAGGCTGACTGACACTATTTCCAATTGATGGTTATGGATTAGTATTTAACAACTGGGTTCTTCAGGGTTCATTTATCTGTATTCGAGTTCTTTCTCTGGCTACTGTACAGAATAACAATGTTTCTGGATGTATACAACAATTTGCAATCAAATTTTTAGTGCTTTGATGCTTTGCTTTGTAGTGGTTATGAGAAACCTTTATTCCATTGTTGTTAGGGATGGTGAATTGGTTCATTAAGAGATGAAAATTAGAAGCCGATGCAGATTCGTGCTTATGGGAACGTTTCTTGTACGAAATGAATACTTCAACAAATATAACAAAATATGTGAATTAGAGCAAGAAATCCAAAGGAGGCACCAAAATAACCATTGTTTCATAATTTGTAAAAGTCCCCAAAAATATCACAAAGATCTCACTCAGTCAACTATGTCTTCTTGTCTAGATGCAATCTTCCCAGTGTATTTTCTAGTGCTAGCTATTTTTTTAAAGGTACAAGAACTTTTTTTTTTTTGGTATCCAGTTGAGATAGCATTGAAAATAAACAATTGAAAAAAATAAGAAACATAGACATTAGTAAGAATCCAATGCCATTGAGAACCTATAGGCTATAGCTACTCTCCAATGTTCATCCACGGAGTCATCTGGCTGAAAGGTATGGTCAATGGACAACAAGTGAATATTCTCGTACTACCTCTTCTTTGTTTTGAGGGATGGAAGAAGCAAAGTTACTTGAAAGATGGTTATTGTCTCAAGAAGGCACAATGAGATATAGTAATGTGTTGTAACCTTAGTGCCTGAATAAGATACCTGATTCTCTTGCTAAATCTTTGTCCTAAAGTGTTTTTATCCTCTTGGCTTAGAATGGAAACTAAAATTAGACAATGGATCTGTGCTTATGATCAAGCCTGATACACTATACATATGTTTTTCTGTCTAGCATACCAATTCATGCTCCAAAGACTAACATTATATGCTTTTTAAATAAATTTTCATTCCATCAATTTTGAACGGAGCTTGAAACTAAATACAGTTTGACGTACAACAGTTGCAAGTTTGAAAACTCATTGGATATTTGACGTTCTGAATAGGTGATTTGAGGGGATTCTGAACATATAGCTGCTAGGAATGACAGTATTAAAGCGCTACGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCCAATGTGGTAGATAGAAATAATGGACGGATTGTTGCAACTGCATCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCCGCAGTTGTTGGAGAAGTGTTGGCTATGCGACTCAAAGTCGACGGTCTTGAACAGGGGCAAGGAAGAGGGATTCATGTAGATGTAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCCATAGTCAACTCACTCAAGAATAACGGAGTTAAACTTGTTCTCGACGACAATGTTGGAGATGCATCTCGGCCAAGTTATCAATAA

mRNA sequence

ATGCGATGCGGATCGAGGGTTCGAGGTTCTGTGATCGGGAGGCTGAGGCTTCTGATTTATAGGACTGCTCCACGTTTCCACGTGTCCTTCACGAACCTCTACTTCTGGTTGCGTAGCCGACTGAATTTGTTTTGTGAGGGCAAATTAGAGAATTCACCTCCTGTTAGTGTATACCAATCCCTACCTCTCGTATCGCGCCGACGACCCACATCCGCCGTGCCGGCGACCTTCTTCCGCCACGCCGTCGAGACTCCTGCTCGCCCCACATCCTCCATCGATTCTCCTTCTGCGCGAGGACTGTACAATTTCTCAGAAATTCAAACTAAGGAAGAAGTTGACGCAAGCGCCGATACGGGGGAAGACCATTCTATTGAAGATGATTACTCCTCAAGCGATAGCGGAGACGAAGGAGTTAGCAAGAAAAAGAAAACGGTAGACAAAAAGGCCGTCTCCTCCGTTTCAGCAGCCCAGTGTCGCCGCCGCAGCCTCCTTCACAGCGTGGTTATGAGAAACCTTTATTCCATTGTTGTTAGGGATGGTGAATTGCTGCTAGGAATGACAGTATTAAAGCGCTACGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCCAATGTGGTAGATAGAAATAATGGACGGATTGTTGCAACTGCATCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCCGCAGTTGTTGGAGAAGTGTTGGCTATGCGACTCAAAGTCGACGGTCTTGAACAGGGGCAAGGAAGAGGGATTCATGTAGATGTAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCCATAGTCAACTCACTCAAGAATAACGGAGTTAAACTTGTTCTCGACGACAATGTTGGAGATGCATCTCGGCCAAGTTATCAATAA

Coding sequence (CDS)

ATGCGATGCGGATCGAGGGTTCGAGGTTCTGTGATCGGGAGGCTGAGGCTTCTGATTTATAGGACTGCTCCACGTTTCCACGTGTCCTTCACGAACCTCTACTTCTGGTTGCGTAGCCGACTGAATTTGTTTTGTGAGGGCAAATTAGAGAATTCACCTCCTGTTAGTGTATACCAATCCCTACCTCTCGTATCGCGCCGACGACCCACATCCGCCGTGCCGGCGACCTTCTTCCGCCACGCCGTCGAGACTCCTGCTCGCCCCACATCCTCCATCGATTCTCCTTCTGCGCGAGGACTGTACAATTTCTCAGAAATTCAAACTAAGGAAGAAGTTGACGCAAGCGCCGATACGGGGGAAGACCATTCTATTGAAGATGATTACTCCTCAAGCGATAGCGGAGACGAAGGAGTTAGCAAGAAAAAGAAAACGGTAGACAAAAAGGCCGTCTCCTCCGTTTCAGCAGCCCAGTGTCGCCGCCGCAGCCTCCTTCACAGCGTGGTTATGAGAAACCTTTATTCCATTGTTGTTAGGGATGGTGAATTGCTGCTAGGAATGACAGTATTAAAGCGCTACGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCCAATGTGGTAGATAGAAATAATGGACGGATTGTTGCAACTGCATCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCCGCAGTTGTTGGAGAAGTGTTGGCTATGCGACTCAAAGTCGACGGTCTTGAACAGGGGCAAGGAAGAGGGATTCATGTAGATGTAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCCATAGTCAACTCACTCAAGAATAACGGAGTTAAACTTGTTCTCGACGACAATGTTGGAGATGCATCTCGGCCAAGTTATCAATAA

Protein sequence

MRCGSRVRGSVIGRLRLLIYRTAPRFHVSFTNLYFWLRSRLNLFCEGKLENSPPVSVYQSLPLVSRRRPTSAVPATFFRHAVETPARPTSSIDSPSARGLYNFSEIQTKEEVDASADTGEDHSIEDDYSSSDSGDEGVSKKKKTVDKKAVSSVSAAQCRRRSLLHSVVMRNLYSIVVRDGELLLGMTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLVLDDNVGDASRPSYQ

Homology

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BLAST of Spg000383 vs. NCBI nr
Match: XP_038901007.1 (uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901008.1 uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901009.1 uncharacterized protein LOC120088052 [Benincasa hispida])

HSP 1 Score: 238.8 bits (608), Expect = 6.3e-59
Identity = 122/128 (95.31%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 186 MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 245
           MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 246 EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLVLDDNVG 305
           EVLAMRLKVDGLEQGQGRGIH DVNKEIEKKGFKNRTKIWAIVN+LKNNGVKL+LD+NV 
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADVNKEIEKKGFKNRTKIWAIVNALKNNGVKLILDNNVD 120

Query: 306 DASRPSYQ 314
           DASR SYQ
Sbjct: 121 DASRSSYQ 128

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BLAST of Spg000383 vs. NCBI nr
Match: XP_023511782.1 (uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511784.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511785.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511786.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511787.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511788.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.4 bits (607), Expect = 8.2e-59
Identity = 121/128 (94.53%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 186 MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 245
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 246 EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLVLDDNVG 305
           EVLAMRLKVDGLEQGQGRGIH+DVNKEIEKKGFKNRTKIWAIVNSLKNNGVKL+LD+N  
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 306 DASRPSYQ 314
           DASRPSY+
Sbjct: 121 DASRPSYE 128

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BLAST of Spg000383 vs. NCBI nr
Match: XP_022943852.1 (uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943854.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943855.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943856.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943857.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943858.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943860.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >KAG7010651.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.0 bits (606), Expect = 1.1e-58
Identity = 120/128 (93.75%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 186 MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 245
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 246 EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLVLDDNVG 305
           EVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKGFKNRTKIWAIVNSLKNNGVKL+LD+N  
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 306 DASRPSYQ 314
           DASRPSY+
Sbjct: 121 DASRPSYE 128

[Close]

BLAST of Spg000383 vs. NCBI nr
Match: XP_022985582.1 (uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985584.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985585.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985586.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985588.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985589.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985590.1 uncharacterized protein LOC111483610 [Cucurbita maxima])

HSP 1 Score: 235.7 bits (600), Expect = 5.3e-58
Identity = 119/128 (92.97%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 186 MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 245
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 246 EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLVLDDNVG 305
           EVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKGFKNRTKIWAIVNSLKNNGVKL+LD+N  
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 306 DASRPSYQ 314
           DA RPSY+
Sbjct: 121 DAVRPSYE 128

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BLAST of Spg000383 vs. NCBI nr
Match: XP_022140774.1 (uncharacterized protein LOC111011356 [Momordica charantia] >XP_022140775.1 uncharacterized protein LOC111011356 [Momordica charantia])

HSP 1 Score: 233.0 bits (593), Expect = 3.4e-57
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 186 MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 245
           MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 246 EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLVLDDNVG 305
           EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKG KN TKIWAIVNSL+N GVKL+LDDNV 
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIWAIVNSLRNGGVKLILDDNVD 120

Query: 306 DASRPSYQ 314
            ASRP YQ
Sbjct: 121 GASRPGYQ 128

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BLAST of Spg000383 vs. ExPASy Swiss-Prot
Match: Q5F5U3 (50S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) OX=242231 GN=rplR PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.6e-04
Identity = 32/108 (29.63%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 189 LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 248
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 249 AMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGV 297
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

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BLAST of Spg000383 vs. ExPASy Swiss-Prot
Match: A9M3V0 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) OX=374833 GN=rplR PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.6e-04
Identity = 32/108 (29.63%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 189 LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 248
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 249 AMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGV 297
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]

BLAST of Spg000383 vs. ExPASy Swiss-Prot
Match: Q9JQQ6 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=rplR PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.6e-04
Identity = 32/108 (29.63%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 189 LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 248
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 249 AMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGV 297
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]

BLAST of Spg000383 vs. ExPASy Swiss-Prot
Match: Q7DDT0 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) OX=122586 GN=rplR PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.6e-04
Identity = 32/108 (29.63%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 189 LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 248
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 249 AMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGV 297
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]

BLAST of Spg000383 vs. ExPASy Swiss-Prot
Match: A1KRI9 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) OX=272831 GN=rplR PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.6e-04
Identity = 32/108 (29.63%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 189 LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 248
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 249 AMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGV 297
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]

BLAST of Spg000383 vs. ExPASy TrEMBL
Match: A0A6J1FXG0 (uncharacterized protein LOC111448460 OS=Cucurbita moschata OX=3662 GN=LOC111448460 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 5.2e-59
Identity = 120/128 (93.75%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 186 MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 245
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 246 EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLVLDDNVG 305
           EVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKGFKNRTKIWAIVNSLKNNGVKL+LD+N  
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 306 DASRPSYQ 314
           DASRPSY+
Sbjct: 121 DASRPSYE 128

[Close]

BLAST of Spg000383 vs. ExPASy TrEMBL
Match: A0A6J1JBQ5 (uncharacterized protein LOC111483610 OS=Cucurbita maxima OX=3661 GN=LOC111483610 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.6e-58
Identity = 119/128 (92.97%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 186 MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 245
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 246 EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLVLDDNVG 305
           EVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKGFKNRTKIWAIVNSLKNNGVKL+LD+N  
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 306 DASRPSYQ 314
           DA RPSY+
Sbjct: 121 DAVRPSYE 128

[Close]

BLAST of Spg000383 vs. ExPASy TrEMBL
Match: A0A6J1CGQ4 (uncharacterized protein LOC111011356 OS=Momordica charantia OX=3673 GN=LOC111011356 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.7e-57
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 186 MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 245
           MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 246 EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLVLDDNVG 305
           EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKG KN TKIWAIVNSL+N GVKL+LDDNV 
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIWAIVNSLRNGGVKLILDDNVD 120

Query: 306 DASRPSYQ 314
            ASRP YQ
Sbjct: 121 GASRPGYQ 128

[Close]

BLAST of Spg000383 vs. ExPASy TrEMBL
Match: A0A6P3ZI60 (uncharacterized protein LOC107411474 OS=Ziziphus jujuba OX=326968 GN=LOC107411474 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.9e-57
Identity = 117/127 (92.13%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 186 MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 245
           MTVLKRYVLRLFISLKYITANVVDRNNGR VAT+STVEHSIKGSLECGRSCNAKAA+VVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRNVATSSTVEHSIKGSLECGRSCNAKAASVVG 60

Query: 246 EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLVLDDNVG 305
           EVLAMRLKV+GLEQGQGRGIHVDVNKE+EKKGFKNRTKIWAIVNSLKNNGVKL+LDDN  
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDDNDE 120

Query: 306 DASRPSY 313
           ++SRPSY
Sbjct: 121 NSSRPSY 127

[Close]

BLAST of Spg000383 vs. ExPASy TrEMBL
Match: A0A5C7GTN9 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027435 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.4e-56
Identity = 116/127 (91.34%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 186 MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 245
           MTVLKRYVLRLFISLKYITANVVDRNNGRIV TASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 58  MTVLKRYVLRLFISLKYITANVVDRNNGRIVVTASTVEHSIKNSLECGRSCNAKAAAIVG 117

Query: 246 EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLVLDDNVG 305
           EVLAMRLKV+GLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNG+KL+L+DN  
Sbjct: 118 EVLAMRLKVEGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGIKLLLEDNDD 177

Query: 306 DASRPSY 313
           + SRPSY
Sbjct: 178 NTSRPSY 184

[Close]

BLAST of Spg000383 vs. TAIR 10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 203.8 bits (517), Expect = 2.1e-52
Identity = 99/121 (81.82%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 186 MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 245
           MTVLKRYVLRLF+S+KYITANVVDRNNGRIV TASTVEH+IK SLECGR+CNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVG 60

Query: 246 EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLVLDDNVG 305
           EVLAMRLKV+GL+ GQGRGIH DV KEIEKKGFK+RTK+WA++NSL+NNGV L+LDD+  
Sbjct: 61  EVLAMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLILDDDDD 120

Query: 306 D 307
           D
Sbjct: 121 D 121

The following BLAST results are available for this feature:

BLAST of Spg000383 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901007.1	6.3e-59	95.31	uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901008.1 unchara...	[more]
XP_023511782.1	8.2e-59	94.53	uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783....	[more]
XP_022943852.1	1.1e-58	93.75	uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 unchar...	[more]
XP_022985582.1	5.3e-58	92.97	uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharac...	[more]
XP_022140774.1	3.4e-57	92.97	uncharacterized protein LOC111011356 [Momordica charantia] >XP_022140775.1 uncha...	[more]

BLAST of Spg000383 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5F5U3	1.6e-04	29.63	50S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090...	[more]
A9M3V0	1.6e-04	29.63	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) ...	[more]
Q9JQQ6	1.6e-04	29.63	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (s...	[more]
Q7DDT0	1.6e-04	29.63	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) OX...	[more]
A1KRI9	1.6e-04	29.63	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C / serotype 2a (s...	[more]

BLAST of Spg000383 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXG0	5.2e-59	93.75	uncharacterized protein LOC111448460 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A6J1JBQ5	2.6e-58	92.97	uncharacterized protein LOC111483610 OS=Cucurbita maxima OX=3661 GN=LOC111483610...	[more]
A0A6J1CGQ4	1.7e-57	92.97	uncharacterized protein LOC111011356 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6P3ZI60	4.9e-57	92.13	uncharacterized protein LOC107411474 OS=Ziziphus jujuba OX=326968 GN=LOC10741147...	[more]
A0A5C7GTN9	1.4e-56	91.34	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027435 PE=4 SV=1	[more]

BLAST of Spg000383 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45020.1	2.1e-52	81.82	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 175..298 e-value: 2.1E-17 score: 65.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..144
None	No IPR available	PANTHER	PTHR12899:SF12	OS09G0549700 PROTEIN	coord: 155..307
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 190..296 e-value: 1.56758E-16 score: 71.8023
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 189..296
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 190..259 e-value: 9.9E-8 score: 32.3
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 155..307

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000383.1	Spg000383.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome