Spg000311 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000311
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein RADIALIS-like 2
Location	scaffold8: 37320635 .. 37321831 (+)
RNA-Seq Expression	Spg000311
Synteny	Spg000311

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAATCTCTTTTGGGTTGCTTTGAGAGAGAAGACTAGGAAGGTAGTGTTAGAGAGAGAGAGAGAGAGAGAGAGATGGTGATTCTCTTACATTGCATAGTATTTGGTATTTGCTGCTGTGCATCTTTGTCTTCTCTCCCACTTCCATTTTGTGGTTCCTAAGTAGACAAATCATTCAAAATTCTCACTCTCCCTTTTTGCAAGATTTCCTCTGCCAACTCTCTCTCTCTTTTCCCCACACACACTCTCCCCCTTATAAAACCCCCTCCTTCTTCATCCCTTCTTCCTCACTCACTTTCCTTTCCCAATGGCTTCCATCTCCTCCTCTCATGACTCTGGCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAGAGGGCCTTGGCTGTCTTTGACAAGGACACCCCCGATCGCTGGCTCAACGTCGCCAAGGCCGTCGGCGGCAAGACCGCCGACGAAGTCAAGAGGCATTTCGAGCTTCTCGTCGAGGATGTCAAGCACATTGAATCCGGCCGCGTTCCCTTCCCTAATTATACCTCCGCCCCTGGAACCTCCAATGGCAATAATGTCGATGACCAAGAACAAAGGTAGCTCTCTAAATTCTCCTTTTTCCTCCGCAATACCTTCGTACGAAAACACATGCTTTTATCTTGAAAATTGAACTTTCACAATTTGAGAGAACATATAAATGTCTTCATCATTAAGCTATGCTCAAGTTGATTTACATGTATATATTTATATTTCTTACGAGAAAAGTCCAATCTCTAAGTCGCTGTCGACCCACTTTTAATTTATTTTCTTTCACTTTTGAGATTCTCCATGTGTATCTCAATTACTTGGGATCTTTTTCTTATAATTTCAATCTTCTTTCCTTGACGTGTTCTCTAGCAATCCCTTTTCCCACTCTATAAAAGTATAGATTTTTTCTTTTCCCAATAAAAATATATCAAATTAATTAAAATTCTAATATTATATATTTTTATTATGTCTTTAAAGTTTTGAATTTTCTAGTAAAAGAACTGTTTGAAACTTGAATTTTGAGGGTGTTGGGTTTCCAGAAAAAGATAAAAGCATGCAATCCAATCATGCCTCAATTGGTAAATGCAATGTTTCTGATTTGTTGATTTTTTTAAATTTGAAGTCAACAGTTTACGAGAACTCTGTGGCGTGCCACTCACGTGCCTTCTCCATAG

mRNA sequence

ATGGCTTCCATCTCCTCCTCTCATGACTCTGGCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAGAGGGCCTTGGCTGTCTTTGACAAGGACACCCCCGATCGCTGGCTCAACGTCGCCAAGGCCGTCGGCGGCAAGACCGCCGACGAAGTCAAGAGGCATTTCGAGCTTCTCGTCGAGGATGTCAAGCACATTGAATCCGGCCGCGTTCCCTTCCCTAATTATACCTCCGCCCCTGGAACCTCCAATGGCAATAATGTCGATGACCAAGAACAAAGTCAACAGTTTACGAGAACTCTGTGGCGTGCCACTCACGTGCCTTCTCCATAG

Coding sequence (CDS)

ATGGCTTCCATCTCCTCCTCTCATGACTCTGGCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAGAGGGCCTTGGCTGTCTTTGACAAGGACACCCCCGATCGCTGGCTCAACGTCGCCAAGGCCGTCGGCGGCAAGACCGCCGACGAAGTCAAGAGGCATTTCGAGCTTCTCGTCGAGGATGTCAAGCACATTGAATCCGGCCGCGTTCCCTTCCCTAATTATACCTCCGCCCCTGGAACCTCCAATGGCAATAATGTCGATGACCAAGAACAAAGTCAACAGTTTACGAGAACTCTGTGGCGTGCCACTCACGTGCCTTCTCCATAG

Protein sequence

MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQSQQFTRTLWRATHVPSP

Homology

[Close]

BLAST of Spg000311 vs. NCBI nr
Match: XP_038902123.1 (protein RADIALIS-like 2 [Benincasa hispida])

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-36
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAV-GGKTADEVKRHFELLV 60
          MASISSSHDSGSWTP QNKAFERALAVFDKDTPDRWLNVA AV GGKTADEVKRHF+LLV
Sbjct: 1  MASISSSHDSGSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTADEVKRHFDLLV 60

Query: 61 EDVKHIESGRVPFPNY--TSAPGTSNGNNVDDQEQ 93
          EDVKHIESGRVPFPNY  TS P TS+  N++DQEQ
Sbjct: 61 EDVKHIESGRVPFPNYTSTSTPATSDNGNLNDQEQ 95

[Close]

BLAST of Spg000311 vs. NCBI nr
Match: XP_023515007.1 (transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.3 bits (399), Expect = 3.8e-35
Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVE 60
          MASISSSHDS SW+P QNKAFERALAVFDKDTPDRWLNVAKAVG KTADEVKRHFELLVE
Sbjct: 1  MASISSSHDSTSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTADEVKRHFELLVE 60

Query: 61 DVKHIESGRVPFPNYT--SAPGTSNGNNVDDQEQ 93
          DVKHIESG VPFPNYT  SAP TS+ +N++DQEQ
Sbjct: 61 DVKHIESGLVPFPNYTSSSAPRTSH-DNINDQEQ 93

[Close]

BLAST of Spg000311 vs. NCBI nr
Match: KAG6571113.1 (Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.8 bits (382), Expect = 3.5e-33
Identity = 79/100 (79.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAV-GGKTADEVKRHFELLV 60
          MAS+SSSH S SWTPKQNKAFERALAVFDKDTPDRWLNVAKAV GGKT DEVK HF+LLV
Sbjct: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIESGRVPFPNYTSA---PGTSNGNNVDDQEQSQQF 97
          EDVKHIESG VPFPNY+S     GTSN  N++DQEQ   F
Sbjct: 61 EDVKHIESGHVPFPNYSSTASDSGTSNA-NINDQEQRYHF 99

[Close]

BLAST of Spg000311 vs. NCBI nr
Match: KAG7035087.1 (Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 4.6e-33
Identity = 78/96 (81.25%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVE 60
          MASISSSH S SW+P QNKAFERALAVFDKDTPDRWLNVAKAVG KT DEVKRHFELLVE
Sbjct: 1  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60

Query: 61 DVKHIESGRVPFPNYT----SAPGTSNGNNVDDQEQ 93
          DVKHIESG VPFPNYT    SAP TS  +N++DQE+
Sbjct: 61 DVKHIESGLVPFPNYTSSSSSAPRTSY-DNINDQEK 95

[Close]

BLAST of Spg000311 vs. NCBI nr
Match: XP_022946976.1 (transcription factor RADIALIS-like [Cucurbita moschata])

HSP 1 Score: 151.0 bits (380), Expect = 6.0e-33
Identity = 78/96 (81.25%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVE 60
          MASISSSHDS SW+P QNKAFE ALAVFDKDTPDRWLNVAKAVG KT DEVKRHFELLVE
Sbjct: 1  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60

Query: 61 DVKHIESGRVPFPNYT----SAPGTSNGNNVDDQEQ 93
          DVKHIESG VPFPNYT    SAP TS+ +N++ QEQ
Sbjct: 61 DVKHIESGLVPFPNYTSSSSSAPRTSH-DNINGQEQ 95

[Close]

BLAST of Spg000311 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-27
Identity = 58/93 (62.37%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1  MASIS-SSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLV 60
          MAS S SS  SGSWT KQNKAFE+ALA +D+DTP+RW NVAK VGGKT +EVKRH+ELLV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ 93
          +D+  IE+G VPFPNY ++ G +NG    ++++
Sbjct: 61 QDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR 93

[Close]

BLAST of Spg000311 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.7e-27
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1  MASIS-SSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLV 60
          MAS S SS+ SGSWT KQNKAFERALAV+D+DTPDRW NVA+AVGGKT +E KR ++LLV
Sbjct: 1  MASGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLV 60

Query: 61 EDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ 93
           D++ IE+G VPFP+Y +  G SN   + D+E+
Sbjct: 61 RDIESIENGHVPFPDYKTTTGNSNRGRLRDEEK 93

[Close]

BLAST of Spg000311 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-24
Identity = 54/90 (60.00%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 4  ISSSHDSG-SWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDV 63
          ++S+  SG  W+ K+NKAFERALAV+DKDTPDRW NVA+AV G+T +EVK+H+E+LVED+
Sbjct: 1  MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60

Query: 64 KHIESGRVPFPNYTSAPGTSNGNNVDDQEQ 93
          K+IESG+VPFPNY     T+ GN   D+++
Sbjct: 61 KYIESGKVPFPNYR----TTGGNMKTDEKR 86

[Close]

BLAST of Spg000311 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.3e-24
Identity = 57/86 (66.28%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVE 60
          MAS S S  S SWT K+NK FERALA +D+DTPDRW NVA+AVGGK+A+EV+RH+ELL+ 
Sbjct: 1  MASNSMS-SSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIR 60

Query: 61 DVKHIESGRVPFPNYTSAPGTSNGNN 87
          DV  IESGR P PNY      SNGNN
Sbjct: 61 DVNDIESGRYPHPNY-----RSNGNN 80

[Close]

BLAST of Spg000311 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-23
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVE 60
          MAS SS   S SWT KQNK FERALAV+DKDTPDRW NVAKAVG K+A+EVKRH+++LVE
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 61 DVKHIESGRVPFPNYTSAPGTSNGNNVDD 90
          D+ +IE   VP P Y +    S    +DD
Sbjct: 61 DLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]

BLAST of Spg000311 vs. ExPASy TrEMBL
Match: A0A6J1G543 (transcription factor RADIALIS-like OS=Cucurbita moschata OX=3662 GN=LOC111450995 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.9e-33
Identity = 78/96 (81.25%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVE 60
          MASISSSHDS SW+P QNKAFE ALAVFDKDTPDRWLNVAKAVG KT DEVKRHFELLVE
Sbjct: 1  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60

Query: 61 DVKHIESGRVPFPNYT----SAPGTSNGNNVDDQEQ 93
          DVKHIESG VPFPNYT    SAP TS+ +N++ QEQ
Sbjct: 61 DVKHIESGLVPFPNYTSSSSSAPRTSH-DNINGQEQ 95

[Close]

BLAST of Spg000311 vs. ExPASy TrEMBL
Match: A0A6J1CYR5 (protein RADIALIS-like 2 OS=Momordica charantia OX=3673 GN=LOC111015511 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.8e-33
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVE 60
          MA++SS   SGSWTP QNKAFERALAVFDKDTPDRW NVA AVGGKTADEVKRHF+LLVE
Sbjct: 1  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVE 60

Query: 61 DVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ 93
          DVKHIESGR+PFPNYT+    S+  NV+D+E+
Sbjct: 61 DVKHIESGRIPFPNYTATTTGSSNGNVNDEEK 92

[Close]

BLAST of Spg000311 vs. ExPASy TrEMBL
Match: A0A6J1FXX9 (protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.0e-33
Identity = 78/96 (81.25%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAV-GGKTADEVKRHFELLV 60
          MAS++SSH S SWTPKQNKAFERALAVFDKDTPDRWLNVAKAV GGKT DEVK HF+LLV
Sbjct: 1  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIESGRVPFPNYT---SAPGTSNGNNVDDQEQ 93
          EDVKHIESG VPFPNY+   SA GTSN  N++DQEQ
Sbjct: 61 EDVKHIESGHVPFPNYSSTASASGTSNA-NINDQEQ 95

[Close]

BLAST of Spg000311 vs. ExPASy TrEMBL
Match: A0A6J1JBS7 (protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.9e-32
Identity = 77/96 (80.21%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAV-GGKTADEVKRHFELLV 60
          MAS+SSSH S SWTPK+NKAFERALAVFDKDTPDRWLNVAKAV GGKT DEVK HF+LLV
Sbjct: 1  MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIESGRVPFPNYT---SAPGTSNGNNVDDQEQ 93
          EDVKHIE G VPFPNY+   SA GTSN  N++DQEQ
Sbjct: 61 EDVKHIEFGHVPFPNYSSTASATGTSNA-NINDQEQ 95

[Close]

BLAST of Spg000311 vs. ExPASy TrEMBL
Match: A0A6J1L657 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499536 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.5e-32
Identity = 71/85 (83.53%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVE 60
          MASISSS DS SW+P QNKAFERALA+FDKDTPDRWLNVAKAVG KTADEVKRHFELLVE
Sbjct: 1  MASISSSQDSTSWSPNQNKAFERALAIFDKDTPDRWLNVAKAVGDKTADEVKRHFELLVE 60

Query: 61 DVKHIESGRVPFPNYTSAPGTSNGN 86
          DVKHIESG VPFPNYTS+  +S+ +
Sbjct: 61 DVKHIESGLVPFPNYTSSSSSSSAS 85

[Close]

BLAST of Spg000311 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-28
Identity = 58/93 (62.37%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1  MASIS-SSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLV 60
          MAS S SS  SGSWT KQNKAFE+ALA +D+DTP+RW NVAK VGGKT +EVKRH+ELLV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ 93
          +D+  IE+G VPFPNY ++ G +NG    ++++
Sbjct: 61 QDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR 93

[Close]

BLAST of Spg000311 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 121.3 bits (303), Expect = 4.7e-28
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1  MASIS-SSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLV 60
          MAS S SS+ SGSWT KQNKAFERALAV+D+DTPDRW NVA+AVGGKT +E KR ++LLV
Sbjct: 1  MASGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLV 60

Query: 61 EDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ 93
           D++ IE+G VPFP+Y +  G SN   + D+E+
Sbjct: 61 RDIESIENGHVPFPDYKTTTGNSNRGRLRDEEK 93

[Close]

BLAST of Spg000311 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 110.5 bits (275), Expect = 8.4e-25
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVE 60
          MAS SS   S SWT KQNK FERALAV+DKDTPDRW NVAKAVG K+A+EVKRH+++LVE
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 61 DVKHIESGRVPFPNYTSAPGTSNGNNVDD 90
          D+ +IE   VP P Y +    S    +DD
Sbjct: 61 DLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]

BLAST of Spg000311 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVE 60
          MAS S S  S  WT  QNK FERALAV+DKDTPDRW NVAKAVGGKT +EVKRH+++LVE
Sbjct: 1  MASNSRSSIS-PWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKHIESGRVPFPNYTSAPGTSNGNNVDD 90
          D+ +IE+GRVP PNY +    SN  +++D
Sbjct: 61 DLINIETGRVPLPNYKTF--ESNSRSIND 86

[Close]

BLAST of Spg000311 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVE 60
          MAS S S  S  WT  QNK FERALAV+DKDTPDRW NVAKAVGGKT +EVKRH+++LVE
Sbjct: 1  MASNSRSSIS-PWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKHIESGRVPFPNYTSAPGTSNGNNVDD 90
          D+ +IE+GRVP PNY +    SN  +++D
Sbjct: 61 DLINIETGRVPLPNYKTF--ESNSRSIND 86

The following BLAST results are available for this feature:

BLAST of Spg000311 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902123.1	1.2e-36	86.32	protein RADIALIS-like 2 [Benincasa hispida]	[more]
XP_023515007.1	3.8e-35	86.17	transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo]	[more]
KAG6571113.1	3.5e-33	79.00	Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7035087.1	4.6e-33	81.25	Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_022946976.1	6.0e-33	81.25	transcription factor RADIALIS-like [Cucurbita moschata]	[more]

BLAST of Spg000311 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	3.0e-27	62.37	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	6.7e-27	63.44	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	1.1e-24	60.00	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q6NNN0	5.3e-24	66.28	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q8GW75	1.2e-23	61.80	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of Spg000311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G543	2.9e-33	81.25	transcription factor RADIALIS-like OS=Cucurbita moschata OX=3662 GN=LOC111450995...	[more]
A0A6J1CYR5	3.8e-33	77.17	protein RADIALIS-like 2 OS=Momordica charantia OX=3673 GN=LOC111015511 PE=4 SV=1	[more]
A0A6J1FXX9	5.0e-33	81.25	protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1	[more]
A0A6J1JBS7	1.9e-32	80.21	protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1	[more]
A0A6J1L657	2.5e-32	83.53	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499536 PE=4 SV=1	[more]

BLAST of Spg000311 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	2.1e-28	62.37	RAD-like 1	[more]
AT2G21650.1	4.7e-28	63.44	Homeodomain-like superfamily protein	[more]
AT1G19510.1	8.4e-25	61.80	RAD-like 5	[more]
AT1G75250.1	1.1e-24	64.04	RAD-like 6	[more]
AT1G75250.2	1.1e-24	64.04	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..61 e-value: 1.4E-6 score: 37.8
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 5..59 score: 6.237266
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 13..59 e-value: 2.46234E-5 score: 36.7846
None	No IPR available	GENE3D	1.10.10.60		coord: 3..72 e-value: 4.5E-24 score: 86.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..109
None	No IPR available	PANTHER	PTHR43952:SF53	TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED	coord: 1..90
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..90
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 11..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000311.1	Spg000311.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity