Spg000236 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000236
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Poly(A)-specific ribonuclease
Location	scaffold8: 46379533 .. 46380375 (+)
RNA-Seq Expression	Spg000236
Synteny	Spg000236

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAATCCAAGAACCCTCAAGCCCCAGCCCCATCCCCATCGAGATCCGCGAAGTCTGGGACTTCAATCTCCACTACGAATTCAATCTCATCAATCACCTCATCGATCGATACCCTTTCATTTCCATGGACACTGAATTTCCCGGCGTCGTCGTCCGCCCTCCTCTCGACCCATCTCGCCGCCCTCTCACTCTCCGCCCCTCCGATCACTACCTTCTCCTCAAGTCCAACGTCGACGCCCTCAATCTAATCCAGGTCGGCCTCACCCTCTCCGACGCCCACGGCAACCTCCCCACTCTCGGCACCGCCAAGACCTTCATTTGGGAGTTCAATTTCAGGGACTTCGACGTCACCCGTGACCCCCACGCGCCCGACTCCATCGACCTCCTCAAACGCCAGGGCATCGACTTCGCTCGCAACAGAGCCCACGGGGTTGACTCCGCCCGCTTCGCCGAGCTCCTCATGTCCTCCGGCCTTCTCTGTAACGACTCCATCAGTTGGGTCACCTTCCACAGCGCCTACGACTTCGGCTACTTGGTCAAGATCCTCACTCGCCGGAACCTCCCCGCCCGCCTCCACGACTTCCTCAAAATCCTCAGGGCCTTCTTCGGGAACAAGGTCTATGACGTCAAGCACATGATGCGCTTCTGTCACAGCCTCTACGGCGGCTTGGACCGGGTCGCCAAGACCCTTGCCGTCGACCGGGCGGTCGGCAAGTGCCACCAGGCCGGTTCTGATAGCCTGCTCACGTGGCATGCCTTTCAGAAGATGAGGGATGTGTATTTTGTCAAGGATGGCCCGGAGAAGCACGCCGGCGTCTTGTATGGACTAGAAGTGTATTAA

mRNA sequence

ATGTTAATCCAAGAACCCTCAAGCCCCAGCCCCATCCCCATCGAGATCCGCGAAGTCTGGGACTTCAATCTCCACTACGAATTCAATCTCATCAATCACCTCATCGATCGATACCCTTTCATTTCCATGGACACTGAATTTCCCGGCGTCGTCGTCCGCCCTCCTCTCGACCCATCTCGCCGCCCTCTCACTCTCCGCCCCTCCGATCACTACCTTCTCCTCAAGTCCAACGTCGACGCCCTCAATCTAATCCAGGTCGGCCTCACCCTCTCCGACGCCCACGGCAACCTCCCCACTCTCGGCACCGCCAAGACCTTCATTTGGGAGTTCAATTTCAGGGACTTCGACGTCACCCGTGACCCCCACGCGCCCGACTCCATCGACCTCCTCAAACGCCAGGGCATCGACTTCGCTCGCAACAGAGCCCACGGGGTTGACTCCGCCCGCTTCGCCGAGCTCCTCATGTCCTCCGGCCTTCTCTGTAACGACTCCATCAGTTGGGTCACCTTCCACAGCGCCTACGACTTCGGCTACTTGGTCAAGATCCTCACTCGCCGGAACCTCCCCGCCCGCCTCCACGACTTCCTCAAAATCCTCAGGGCCTTCTTCGGGAACAAGGTCTATGACGTCAAGCACATGATGCGCTTCTGTCACAGCCTCTACGGCGGCTTGGACCGGGTCGCCAAGACCCTTGCCGTCGACCGGGCGGTCGGCAAGTGCCACCAGGCCGGTTCTGATAGCCTGCTCACGTGGCATGCCTTTCAGAAGATGAGGGATGTGTATTTTGTCAAGGATGGCCCGGAGAAGCACGCCGGCGTCTTGTATGGACTAGAAGTGTATTAA

Coding sequence (CDS)

ATGTTAATCCAAGAACCCTCAAGCCCCAGCCCCATCCCCATCGAGATCCGCGAAGTCTGGGACTTCAATCTCCACTACGAATTCAATCTCATCAATCACCTCATCGATCGATACCCTTTCATTTCCATGGACACTGAATTTCCCGGCGTCGTCGTCCGCCCTCCTCTCGACCCATCTCGCCGCCCTCTCACTCTCCGCCCCTCCGATCACTACCTTCTCCTCAAGTCCAACGTCGACGCCCTCAATCTAATCCAGGTCGGCCTCACCCTCTCCGACGCCCACGGCAACCTCCCCACTCTCGGCACCGCCAAGACCTTCATTTGGGAGTTCAATTTCAGGGACTTCGACGTCACCCGTGACCCCCACGCGCCCGACTCCATCGACCTCCTCAAACGCCAGGGCATCGACTTCGCTCGCAACAGAGCCCACGGGGTTGACTCCGCCCGCTTCGCCGAGCTCCTCATGTCCTCCGGCCTTCTCTGTAACGACTCCATCAGTTGGGTCACCTTCCACAGCGCCTACGACTTCGGCTACTTGGTCAAGATCCTCACTCGCCGGAACCTCCCCGCCCGCCTCCACGACTTCCTCAAAATCCTCAGGGCCTTCTTCGGGAACAAGGTCTATGACGTCAAGCACATGATGCGCTTCTGTCACAGCCTCTACGGCGGCTTGGACCGGGTCGCCAAGACCCTTGCCGTCGACCGGGCGGTCGGCAAGTGCCACCAGGCCGGTTCTGATAGCCTGCTCACGTGGCATGCCTTTCAGAAGATGAGGGATGTGTATTTTGTCAAGGATGGCCCGGAGAAGCACGCCGGCGTCTTGTATGGACTAGAAGTGTATTAA

Protein sequence

MLIQEPSSPSPIPIEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSRRPLTLRPSDHYLLLKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRDPHAPDSIDLLKRQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVKILTRRNLPARLHDFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY

Homology

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BLAST of Spg000236 vs. NCBI nr
Match: XP_022995114.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima])

HSP 1 Score: 498.8 bits (1283), Expect = 3.0e-137
Identity = 244/280 (87.14%), Postives = 253/280 (90.36%), Query Frame = 0


Query: 1   MLIQEPSSPSPIPIEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSR 60
           MLIQ  SS    PI +REVWDFNLH+EF LINHL+DRYPFISMDTEFPGVVVRP   PS 
Sbjct: 51  MLIQHLSS----PIHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRPAFHPS- 110

Query: 61  RPLTLRPSDHYLLLKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRD 120
                RPSDHYLLLKSNVDALNLIQVGLTLSDA GNLPTLGT K FIWEFNFRDFDVTRD
Sbjct: 111 -----RPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRD 170

Query: 121 PHAPDSIDLLKRQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLV 180
            HAPDSIDLLKRQGIDF RNRAHGVDSARF+ELLMSSGLLCN S+SWVTFHSAYDFGYLV
Sbjct: 171 LHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLV 230

Query: 181 KILTRRNLPARLHDFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKC 240
           KILTRR LP+RL +FLKIL+AFFGNKVYDVKHMMRFC SLYGGL+RVAKTLAVDRAVGKC
Sbjct: 231 KILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKC 290

Query: 241 HQAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 281
           HQAGSDSLLTWHAFQKMRDVYF KDGPEKHAGVLYGLEVY
Sbjct: 291 HQAGSDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 320

[Close]

BLAST of Spg000236 vs. NCBI nr
Match: XP_022957732.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6605970.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 495.7 bits (1275), Expect = 2.6e-136
Identity = 243/280 (86.79%), Postives = 252/280 (90.00%), Query Frame = 0


Query: 1   MLIQEPSSPSPIPIEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSR 60
           MLIQ  SS    PI +REVWDFNLH+EF LIN L+DRYPFISMDTEFPGVVVRP   PS 
Sbjct: 1   MLIQHLSS----PIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPS- 60

Query: 61  RPLTLRPSDHYLLLKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRD 120
                RPSDHYLLLKSNVDALNLIQVGLTLSDA GNLPTLGT K FIWEFNFRDFDVTRD
Sbjct: 61  -----RPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRD 120

Query: 121 PHAPDSIDLLKRQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLV 180
            HAPDSIDLLKRQGIDF RNRAHGVDSARF+ELLMSSGLLCN S+SWVTFHSAYDFGYLV
Sbjct: 121 LHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLV 180

Query: 181 KILTRRNLPARLHDFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKC 240
           KILTRR LP+RL +FLKIL+AFFGNKVYDVKHMMRFC SLYGGL+RVAKTLAVDRAVGKC
Sbjct: 181 KILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 281
           HQAGSDSLLTWHAFQKMRDVYF KDGPEKHAGVLYGLEVY
Sbjct: 241 HQAGSDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270

[Close]

BLAST of Spg000236 vs. NCBI nr
Match: KAG7035921.1 (putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 495.7 bits (1275), Expect = 2.6e-136
Identity = 243/280 (86.79%), Postives = 252/280 (90.00%), Query Frame = 0


Query: 1   MLIQEPSSPSPIPIEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSR 60
           MLIQ  SS    PI +REVWDFNLH+EF LIN L+DRYPFISMDTEFPGVVVRP   PS 
Sbjct: 52  MLIQHLSS----PIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPS- 111

Query: 61  RPLTLRPSDHYLLLKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRD 120
                RPSDHYLLLKSNVDALNLIQVGLTLSDA GNLPTLGT K FIWEFNFRDFDVTRD
Sbjct: 112 -----RPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRD 171

Query: 121 PHAPDSIDLLKRQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLV 180
            HAPDSIDLLKRQGIDF RNRAHGVDSARF+ELLMSSGLLCN S+SWVTFHSAYDFGYLV
Sbjct: 172 LHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLV 231

Query: 181 KILTRRNLPARLHDFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKC 240
           KILTRR LP+RL +FLKIL+AFFGNKVYDVKHMMRFC SLYGGL+RVAKTLAVDRAVGKC
Sbjct: 232 KILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKC 291

Query: 241 HQAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 281
           HQAGSDSLLTWHAFQKMRDVYF KDGPEKHAGVLYGLEVY
Sbjct: 292 HQAGSDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 321

[Close]

BLAST of Spg000236 vs. NCBI nr
Match: XP_023534188.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo] >XP_023534282.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 495.7 bits (1275), Expect = 2.6e-136
Identity = 243/280 (86.79%), Postives = 252/280 (90.00%), Query Frame = 0


Query: 1   MLIQEPSSPSPIPIEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSR 60
           MLIQ  SS    PI +REVWDFNLH+EF LIN L+DRYPFISMDTEFPGVVVRP   PS 
Sbjct: 49  MLIQHLSS----PIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPS- 108

Query: 61  RPLTLRPSDHYLLLKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRD 120
                RPSDHYLLLKSNVDALNLIQVGLTLSDA GNLPTLGT K FIWEFNFRDFDVTRD
Sbjct: 109 -----RPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRD 168

Query: 121 PHAPDSIDLLKRQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLV 180
            HAPDSIDLLKRQGIDF RNRAHGVDSARF+ELLMSSGLLCN S+SWVTFHSAYDFGYLV
Sbjct: 169 LHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLV 228

Query: 181 KILTRRNLPARLHDFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKC 240
           KILTRR LP+RL +FLKIL+AFFGNKVYDVKHMMRFC SLYGGL+RVAKTLAVDRAVGKC
Sbjct: 229 KILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKC 288

Query: 241 HQAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 281
           HQAGSDSLLTWHAFQKMRDVYF KDGPEKHAGVLYGLEVY
Sbjct: 289 HQAGSDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 318

[Close]

BLAST of Spg000236 vs. NCBI nr
Match: XP_038901771.1 (probable CCR4-associated factor 1 homolog 11 [Benincasa hispida])

HSP 1 Score: 474.6 bits (1220), Expect = 6.1e-130
Identity = 230/267 (86.14%), Postives = 238/267 (89.14%), Query Frame = 0


Query: 14  IEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSRRPLTLRPSDHYLL 73
           I+IR+VWDFNL YEFNLINHL  R+PFISMDTEFPGVV+RP L   R    LRPSDHYLL
Sbjct: 3   IQIRQVWDFNLDYEFNLINHLFHRFPFISMDTEFPGVVIRPALHRPR----LRPSDHYLL 62

Query: 74  LKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRDPHAPDSIDLLKRQ 133
           LKSNVDALNLIQVGLTLSDA GNLPTLGT   FIWEFNFRDFDV RD HAPDSI+LLKRQ
Sbjct: 63  LKSNVDALNLIQVGLTLSDADGNLPTLGTDNCFIWEFNFRDFDVVRDLHAPDSIELLKRQ 122

Query: 134 GIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVKILTRRNLPARLH 193
           GIDF RNR HGV S+RFAELLMSSGLLCNDS++WVTFHSAYDFGYLVKILTR  LPARLH
Sbjct: 123 GIDFERNRIHGVPSSRFAELLMSSGLLCNDSVTWVTFHSAYDFGYLVKILTRTKLPARLH 182

Query: 194 DFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKCHQAGSDSLLTWHA 253
           DFLKILR  FGNKVYDVKHMMRFC  LYGGLDRVAKTLAVDRAVGK HQAGSDSLLTW A
Sbjct: 183 DFLKILRGLFGNKVYDVKHMMRFCDGLYGGLDRVAKTLAVDRAVGKSHQAGSDSLLTWQA 242

Query: 254 FQKMRDVYFVKDGPEKHAGVLYGLEVY 281
           FQKMRDVYF KDGPEKHAGVLYGLEVY
Sbjct: 243 FQKMRDVYFFKDGPEKHAGVLYGLEVY 265

[Close]

BLAST of Spg000236 vs. ExPASy Swiss-Prot
Match: Q9FMS6 (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 6.6e-111
Identity = 196/270 (72.59%), Postives = 226/270 (83.70%), Query Frame = 0


Query: 14  IEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSRRPLTLRPSDHYLL 73
           I IR+VW +NL  EF+LI  +++ YPFISMDTEFPGV+ +  LD  RR     P+  Y L
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRG---NPNYLYNL 71

Query: 74  LKSNVDALNLIQVGLTLSDAHGNLPTLGTAKT--FIWEFNFRDFDVTRDPHAPDSIDLLK 133
           LKSNVDAL+LIQVGLTLSDA GNLP LG  K   +IWEFNFRDFDV RDPHAPDSI+LL+
Sbjct: 72  LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 131

Query: 134 RQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVKILTRRNLPAR 193
           R GIDF RNR  GV+S RFAEL+MSSGL+CN+S+SWVTFHSAYDFGYLVKILTRR LP  
Sbjct: 132 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 191

Query: 194 LHDFLKILRAFFGNKVYDVKHMMRFCHS-LYGGLDRVAKTLAVDRAVGKCHQAGSDSLLT 253
           L +FL +LRAFFG++VYDVKH+MRFC   LYGGLDRVA++L V+RAVGKCHQAGSDSLLT
Sbjct: 192 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 251

Query: 254 WHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 281
           W AFQ+MRD+YFV+DG EKHAGVLYGLEV+
Sbjct: 252 WQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of Spg000236 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 1.5e-107
Identity = 189/275 (68.73%), Postives = 220/275 (80.00%), Query Frame = 0


Query: 9   PSPIPIEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSRRPLTLRPS 68
           P  + +  REVW  NL  EF LI+ +ID YPFISMDTEFPGV+ +  L          P 
Sbjct: 12  PDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL------RFTNPD 71

Query: 69  DHYLLLKSNVDALNLIQVGLTLSDAHGNLPTLG--TAKTFIWEFNFRDFDVTRDPHAPDS 128
           D Y LLK+NVDAL+LIQVGLTLSD +GNLP LG    + FIWEFNFRDFDV RD HAPDS
Sbjct: 72  DLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDS 131

Query: 129 IDLLKRQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVKILTRR 188
           I+LL+RQGIDF RN   GV+S RFAEL+MSSGL+CN+ +SWVTFHSAYDFGYL+KILTRR
Sbjct: 132 IELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRR 191

Query: 189 NLPARLHDFLKILRAFFGNKVYDVKHMMRFC-HSLYGGLDRVAKTLAVDRAVGKCHQAGS 248
            LP  L +F +++R  FG +VYDVKHMM+FC   L+GGLDRVA+TL V+RAVGKCHQAGS
Sbjct: 192 ELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGS 251

Query: 249 DSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 281
           DSLLTWHAFQ+MRD+YFV+DGPEKHAGVLYGLEV+
Sbjct: 252 DSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Spg000236 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 3.3e-78
Identity = 146/267 (54.68%), Postives = 196/267 (73.41%), Query Frame = 0


Query: 14  IEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSRRPLTLRPSDHYLL 73
           I+IREVW+ NL  E +LI  ++D +P+++MDTEFPG+VVRP               HY  
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPV-----GTFKSNADYHYET 69

Query: 74  LKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRDPHAPDSIDLLKRQ 133
           LK+NV+ L +IQ+GLT S+  GNLPT GT K  IW+FNFR+FD+  D  A DSI+LLK+ 
Sbjct: 70  LKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQS 129

Query: 134 GIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVKILTRRNLPARLH 193
           GID A+N   G+DS RFAELLMSSG++ N+++ WVTFHS YDFGYL+K+LT +NLP    
Sbjct: 130 GIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQT 189

Query: 194 DFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKCHQAGSDSLLTWHA 253
           DF K++  +F   VYD+KH+M+FC+SL+GGL+++A+ L V+R VG CHQAGSDSLLT   
Sbjct: 190 DFFKLINVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCT 249

Query: 254 FQKMRDVYFVKDGP-EKHAGVLYGLEV 280
           F+K+++ +FV  GP  K++GVLYGL V
Sbjct: 250 FRKLKENFFV--GPLHKYSGVLYGLGV 267

[Close]

BLAST of Spg000236 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.6e-78
Identity = 145/266 (54.51%), Postives = 191/266 (71.80%), Query Frame = 0


Query: 14  IEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSRRPLTLRPSDHYLL 73
           I IREVWD+NL  EF LI  ++D++ +I+MDTEFPGVV++P               +Y  
Sbjct: 10  IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPV-----ATFKYNNDLNYRT 69

Query: 74  LKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRDPHAPDSIDLLKRQ 133
           LK NVD L LIQVGLT SD +GNLPT GT K  IW+FNFR+F++  D +A +SI+LL++ 
Sbjct: 70  LKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQC 129

Query: 134 GIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVKILTRRNLPARLH 193
           GIDF +N   G+D  RF EL+MSSG++ ND+ISWVTFH  YDFGYLVK+LT + LP +  
Sbjct: 130 GIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQA 189

Query: 194 DFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKCHQAGSDSLLTWHA 253
           DF K+L  +F   VYD+KH+M FC+ L+GGL+R+A+ + V+R VG CHQAGSDSLLT  +
Sbjct: 190 DFFKLLYVYFPT-VYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGS 249

Query: 254 FQKMRDVYFVKDGPEKHAGVLYGLEV 280
           F+K+++ YF     EK+ GVLYGL V
Sbjct: 250 FRKLKERYF-PGSTEKYTGVLYGLGV 267

[Close]

BLAST of Spg000236 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 287.0 bits (733), Expect = 2.4e-76
Identity = 141/267 (52.81%), Postives = 194/267 (72.66%), Query Frame = 0


Query: 14  IEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSRRPLTLRPSDHYLL 73
           I+IREVW+ NL  E  LI  ++D +PF++MDTEFPG+V RP               HY  
Sbjct: 10  IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPV-----GTFKTNTEYHYET 69

Query: 74  LKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTF-IWEFNFRDFDVTRDPHAPDSIDLLKR 133
           LK+NV+ L +IQ+GLT SD  GNLPT GT   + IW+FNFR+FD+  D +A DSI+LL++
Sbjct: 70  LKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQ 129

Query: 134 QGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVKILTRRNLPARL 193
            GIDF +N   G+DS RFAELLMSSG++ N+++ WVTFHS YDFGYL+K+LT +NLP   
Sbjct: 130 SGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQ 189

Query: 194 HDFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKCHQAGSDSLLTWH 253
             F +++  +F  +VYD+KH+M+FC+SL+GGL+++A+ L V+R VG CHQAGSDSLLT  
Sbjct: 190 TGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSC 249

Query: 254 AFQKMRDVYFVKDGPEKHAGVLYGLEV 280
            F+K+++ +F+    EK++GVLYGL V
Sbjct: 250 TFRKLQENFFI-GSMEKYSGVLYGLGV 268

[Close]

BLAST of Spg000236 vs. ExPASy TrEMBL
Match: A0A6J1K4S7 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111490755 PE=3 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 1.5e-137
Identity = 244/280 (87.14%), Postives = 253/280 (90.36%), Query Frame = 0


Query: 1   MLIQEPSSPSPIPIEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSR 60
           MLIQ  SS    PI +REVWDFNLH+EF LINHL+DRYPFISMDTEFPGVVVRP   PS 
Sbjct: 51  MLIQHLSS----PIHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRPAFHPS- 110

Query: 61  RPLTLRPSDHYLLLKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRD 120
                RPSDHYLLLKSNVDALNLIQVGLTLSDA GNLPTLGT K FIWEFNFRDFDVTRD
Sbjct: 111 -----RPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRD 170

Query: 121 PHAPDSIDLLKRQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLV 180
            HAPDSIDLLKRQGIDF RNRAHGVDSARF+ELLMSSGLLCN S+SWVTFHSAYDFGYLV
Sbjct: 171 LHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLV 230

Query: 181 KILTRRNLPARLHDFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKC 240
           KILTRR LP+RL +FLKIL+AFFGNKVYDVKHMMRFC SLYGGL+RVAKTLAVDRAVGKC
Sbjct: 231 KILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKC 290

Query: 241 HQAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 281
           HQAGSDSLLTWHAFQKMRDVYF KDGPEKHAGVLYGLEVY
Sbjct: 291 HQAGSDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 320

[Close]

BLAST of Spg000236 vs. ExPASy TrEMBL
Match: A0A6J1GZY2 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111459188 PE=3 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 1.2e-136
Identity = 243/280 (86.79%), Postives = 252/280 (90.00%), Query Frame = 0


Query: 1   MLIQEPSSPSPIPIEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSR 60
           MLIQ  SS    PI +REVWDFNLH+EF LIN L+DRYPFISMDTEFPGVVVRP   PS 
Sbjct: 1   MLIQHLSS----PIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPS- 60

Query: 61  RPLTLRPSDHYLLLKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRD 120
                RPSDHYLLLKSNVDALNLIQVGLTLSDA GNLPTLGT K FIWEFNFRDFDVTRD
Sbjct: 61  -----RPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRD 120

Query: 121 PHAPDSIDLLKRQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLV 180
            HAPDSIDLLKRQGIDF RNRAHGVDSARF+ELLMSSGLLCN S+SWVTFHSAYDFGYLV
Sbjct: 121 LHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLV 180

Query: 181 KILTRRNLPARLHDFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKC 240
           KILTRR LP+RL +FLKIL+AFFGNKVYDVKHMMRFC SLYGGL+RVAKTLAVDRAVGKC
Sbjct: 181 KILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 281
           HQAGSDSLLTWHAFQKMRDVYF KDGPEKHAGVLYGLEVY
Sbjct: 241 HQAGSDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270

[Close]

BLAST of Spg000236 vs. ExPASy TrEMBL
Match: A0A540MJ72 (Poly(A)-specific ribonuclease OS=Malus baccata OX=106549 GN=C1H46_015480 PE=3 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 5.2e-127
Identity = 220/279 (78.85%), Postives = 246/279 (88.17%), Query Frame = 0


Query: 4   QEPSSPSPIPIEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSR--R 63
           Q+P++P   PI IREVW  NL  EF LI ++ID YPFISMDTEFPGVV RPP+DP+    
Sbjct: 5   QDPTTPIQKPIVIREVWAHNLESEFELIQNVIDAYPFISMDTEFPGVVFRPPVDPTSPYS 64

Query: 64  PLTLRPSDHYLLLKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRDP 123
             TLRPSDHY +LKSNVDAL+LIQVGLTLSD+ GNLP LG+   FIWEFNF DFDV RDP
Sbjct: 65  RQTLRPSDHYRILKSNVDALSLIQVGLTLSDSRGNLPDLGSPTRFIWEFNFNDFDVARDP 124

Query: 124 HAPDSIDLLKRQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVK 183
           HAPDSI+LL+RQGIDF RNR+HGVDS+RFAEL+MSSGL+CNDS+SWVTFHSAYDFGYLVK
Sbjct: 125 HAPDSIELLRRQGIDFDRNRSHGVDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVK 184

Query: 184 ILTRRNLPARLHDFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKCH 243
           ILTRR+LP+ L++FLKILR FFGN+VYDVKHMMRFC SLYGGLDRVA+TL VDRAVGKCH
Sbjct: 185 ILTRRDLPSGLNEFLKILRVFFGNRVYDVKHMMRFCKSLYGGLDRVARTLEVDRAVGKCH 244

Query: 244 QAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 281
           QAGSDSLLTWHAFQKMRDVYFV  GPE+HAGVLYGLEV+
Sbjct: 245 QAGSDSLLTWHAFQKMRDVYFVHGGPEQHAGVLYGLEVF 283

[Close]

BLAST of Spg000236 vs. ExPASy TrEMBL
Match: A0A5N5GIF7 (Poly(A)-specific ribonuclease OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_021736 PE=3 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 1.2e-126
Identity = 219/279 (78.49%), Postives = 246/279 (88.17%), Query Frame = 0


Query: 4   QEPSSPSPIPIEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSR--R 63
           Q+P++P   PI IREVW  NL  EF LI ++ID YPFISMDTEFPGVV RPP+DP+    
Sbjct: 5   QDPTTPIQKPIVIREVWAHNLESEFELIQNVIDAYPFISMDTEFPGVVFRPPVDPTTPYS 64

Query: 64  PLTLRPSDHYLLLKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRDP 123
             TLRPSDHY +LKSNVDAL+LIQVGLTLSD+ GNLP LG+   FIWEFNF DFDV RDP
Sbjct: 65  RQTLRPSDHYRILKSNVDALSLIQVGLTLSDSRGNLPDLGSPTRFIWEFNFNDFDVARDP 124

Query: 124 HAPDSIDLLKRQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVK 183
           HAPDSI+LL+RQGIDF RNR+HGVDS+RFAEL+MSSGL+CNDS+SWVTFHSAYDFGYL+K
Sbjct: 125 HAPDSIELLRRQGIDFDRNRSHGVDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLMK 184

Query: 184 ILTRRNLPARLHDFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKCH 243
           ILTRR+LP+ L++FLKILR FFGN+VYDVKHMMRFC SLYGGLDRVA+TL VDRAVGKCH
Sbjct: 185 ILTRRDLPSGLNEFLKILRVFFGNRVYDVKHMMRFCKSLYGGLDRVARTLEVDRAVGKCH 244

Query: 244 QAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 281
           QAGSDSLLTWHAFQKMRDVYFV  GPE+HAGVLYGLEV+
Sbjct: 245 QAGSDSLLTWHAFQKMRDVYFVHGGPEQHAGVLYGLEVF 283

[Close]

BLAST of Spg000236 vs. ExPASy TrEMBL
Match: A0A540MJ75 (Poly(A)-specific ribonuclease OS=Malus baccata OX=106549 GN=C1H46_015481 PE=3 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 7.5e-126
Identity = 218/278 (78.42%), Postives = 245/278 (88.13%), Query Frame = 0


Query: 4   QEPSSPSPIPIEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSR--R 63
           Q+P++P   PI +REVW  NL  EF LI ++ID YPFISMDTEFPGVV RPP+DP+    
Sbjct: 5   QDPTTPIQKPIVVREVWVHNLESEFELIQNVIDAYPFISMDTEFPGVVFRPPVDPTSPYS 64

Query: 64  PLTLRPSDHYLLLKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRDP 123
             TLRPSDHY +LKSNVDAL+LIQVGLTLSD+ GNLP LG+   FIWEFNF DFDVTRDP
Sbjct: 65  RQTLRPSDHYRILKSNVDALSLIQVGLTLSDSRGNLPDLGSPTRFIWEFNFNDFDVTRDP 124

Query: 124 HAPDSIDLLKRQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVK 183
           HAPDSI+LL+ QGIDF RNR+HGVDS+RFAEL+MSSGL+CNDS+SWVTFHSAYDFGYLVK
Sbjct: 125 HAPDSIELLRCQGIDFDRNRSHGVDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVK 184

Query: 184 ILTRRNLPARLHDFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKCH 243
           ILTRR+LP+ L++FLKILR FFGN+VYDVKHMMRFC SLYGGLDRVA+TL VDRAVGKCH
Sbjct: 185 ILTRRDLPSGLNEFLKILRVFFGNRVYDVKHMMRFCKSLYGGLDRVARTLEVDRAVGKCH 244

Query: 244 QAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEV 280
           QAGSDSLLTWHAFQKMRDVYF+  GPE+HAGVLYGLEV
Sbjct: 245 QAGSDSLLTWHAFQKMRDVYFLHGGPEQHAGVLYGLEV 282

[Close]

BLAST of Spg000236 vs. TAIR 10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 401.7 bits (1031), Expect = 4.7e-112
Identity = 196/270 (72.59%), Postives = 226/270 (83.70%), Query Frame = 0


Query: 14  IEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSRRPLTLRPSDHYLL 73
           I IR+VW +NL  EF+LI  +++ YPFISMDTEFPGV+ +  LD  RR     P+  Y L
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRG---NPNYLYNL 71

Query: 74  LKSNVDALNLIQVGLTLSDAHGNLPTLGTAKT--FIWEFNFRDFDVTRDPHAPDSIDLLK 133
           LKSNVDAL+LIQVGLTLSDA GNLP LG  K   +IWEFNFRDFDV RDPHAPDSI+LL+
Sbjct: 72  LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 131

Query: 134 RQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVKILTRRNLPAR 193
           R GIDF RNR  GV+S RFAEL+MSSGL+CN+S+SWVTFHSAYDFGYLVKILTRR LP  
Sbjct: 132 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 191

Query: 194 LHDFLKILRAFFGNKVYDVKHMMRFCHS-LYGGLDRVAKTLAVDRAVGKCHQAGSDSLLT 253
           L +FL +LRAFFG++VYDVKH+MRFC   LYGGLDRVA++L V+RAVGKCHQAGSDSLLT
Sbjct: 192 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 251

Query: 254 WHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 281
           W AFQ+MRD+YFV+DG EKHAGVLYGLEV+
Sbjct: 252 WQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of Spg000236 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 390.6 bits (1002), Expect = 1.1e-108
Identity = 189/275 (68.73%), Postives = 220/275 (80.00%), Query Frame = 0


Query: 9   PSPIPIEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSRRPLTLRPS 68
           P  + +  REVW  NL  EF LI+ +ID YPFISMDTEFPGV+ +  L          P 
Sbjct: 12  PDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL------RFTNPD 71

Query: 69  DHYLLLKSNVDALNLIQVGLTLSDAHGNLPTLG--TAKTFIWEFNFRDFDVTRDPHAPDS 128
           D Y LLK+NVDAL+LIQVGLTLSD +GNLP LG    + FIWEFNFRDFDV RD HAPDS
Sbjct: 72  DLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDS 131

Query: 129 IDLLKRQGIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVKILTRR 188
           I+LL+RQGIDF RN   GV+S RFAEL+MSSGL+CN+ +SWVTFHSAYDFGYL+KILTRR
Sbjct: 132 IELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRR 191

Query: 189 NLPARLHDFLKILRAFFGNKVYDVKHMMRFC-HSLYGGLDRVAKTLAVDRAVGKCHQAGS 248
            LP  L +F +++R  FG +VYDVKHMM+FC   L+GGLDRVA+TL V+RAVGKCHQAGS
Sbjct: 192 ELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGS 251

Query: 249 DSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 281
           DSLLTWHAFQ+MRD+YFV+DGPEKHAGVLYGLEV+
Sbjct: 252 DSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Spg000236 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 293.1 bits (749), Expect = 2.3e-79
Identity = 146/267 (54.68%), Postives = 196/267 (73.41%), Query Frame = 0


Query: 14  IEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSRRPLTLRPSDHYLL 73
           I+IREVW+ NL  E +LI  ++D +P+++MDTEFPG+VVRP               HY  
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPV-----GTFKSNADYHYET 69

Query: 74  LKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRDPHAPDSIDLLKRQ 133
           LK+NV+ L +IQ+GLT S+  GNLPT GT K  IW+FNFR+FD+  D  A DSI+LLK+ 
Sbjct: 70  LKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQS 129

Query: 134 GIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVKILTRRNLPARLH 193
           GID A+N   G+DS RFAELLMSSG++ N+++ WVTFHS YDFGYL+K+LT +NLP    
Sbjct: 130 GIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQT 189

Query: 194 DFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKCHQAGSDSLLTWHA 253
           DF K++  +F   VYD+KH+M+FC+SL+GGL+++A+ L V+R VG CHQAGSDSLLT   
Sbjct: 190 DFFKLINVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCT 249

Query: 254 FQKMRDVYFVKDGP-EKHAGVLYGLEV 280
           F+K+++ +FV  GP  K++GVLYGL V
Sbjct: 250 FRKLKENFFV--GPLHKYSGVLYGLGV 267

[Close]

BLAST of Spg000236 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 293.1 bits (749), Expect = 2.3e-79
Identity = 146/267 (54.68%), Postives = 196/267 (73.41%), Query Frame = 0


Query: 14  IEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSRRPLTLRPSDHYLL 73
           I+IREVW+ NL  E +LI  ++D +P+++MDTEFPG+VVRP               HY  
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPV-----GTFKSNADYHYET 69

Query: 74  LKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRDPHAPDSIDLLKRQ 133
           LK+NV+ L +IQ+GLT S+  GNLPT GT K  IW+FNFR+FD+  D  A DSI+LLK+ 
Sbjct: 70  LKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQS 129

Query: 134 GIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVKILTRRNLPARLH 193
           GID A+N   G+DS RFAELLMSSG++ N+++ WVTFHS YDFGYL+K+LT +NLP    
Sbjct: 130 GIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQT 189

Query: 194 DFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKCHQAGSDSLLTWHA 253
           DF K++  +F   VYD+KH+M+FC+SL+GGL+++A+ L V+R VG CHQAGSDSLLT   
Sbjct: 190 DFFKLINVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCT 249

Query: 254 FQKMRDVYFVKDGP-EKHAGVLYGLEV 280
           F+K+++ +FV  GP  K++GVLYGL V
Sbjct: 250 FRKLKENFFV--GPLHKYSGVLYGLGV 267

[Close]

BLAST of Spg000236 vs. TAIR 10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 293.1 bits (749), Expect = 2.3e-79
Identity = 146/267 (54.68%), Postives = 196/267 (73.41%), Query Frame = 0


Query: 14  IEIREVWDFNLHYEFNLINHLIDRYPFISMDTEFPGVVVRPPLDPSRRPLTLRPSDHYLL 73
           I+IREVW+ NL  E +LI  ++D +P+++MDTEFPG+VVRP               HY  
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPV-----GTFKSNADYHYET 69

Query: 74  LKSNVDALNLIQVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTRDPHAPDSIDLLKRQ 133
           LK+NV+ L +IQ+GLT S+  GNLPT GT K  IW+FNFR+FD+  D  A DSI+LLK+ 
Sbjct: 70  LKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQS 129

Query: 134 GIDFARNRAHGVDSARFAELLMSSGLLCNDSISWVTFHSAYDFGYLVKILTRRNLPARLH 193
           GID A+N   G+DS RFAELLMSSG++ N+++ WVTFHS YDFGYL+K+LT +NLP    
Sbjct: 130 GIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQT 189

Query: 194 DFLKILRAFFGNKVYDVKHMMRFCHSLYGGLDRVAKTLAVDRAVGKCHQAGSDSLLTWHA 253
           DF K++  +F   VYD+KH+M+FC+SL+GGL+++A+ L V+R VG CHQAGSDSLLT   
Sbjct: 190 DFFKLINVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCT 249

Query: 254 FQKMRDVYFVKDGP-EKHAGVLYGLEV 280
           F+K+++ +FV  GP  K++GVLYGL V
Sbjct: 250 FRKLKENFFV--GPLHKYSGVLYGLGV 267

The following BLAST results are available for this feature:

BLAST of Spg000236 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022995114.1	3.0e-137	87.14	probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]	[more]
XP_022957732.1	2.6e-136	86.79	probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6605970.1 ...	[more]
KAG7035921.1	2.6e-136	86.79	putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp...	[more]
XP_023534188.1	2.6e-136	86.79	probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_038901771.1	6.1e-130	86.14	probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]	[more]

BLAST of Spg000236 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMS6	6.6e-111	72.59	Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LXM2	1.5e-107	68.73	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SAI2	3.3e-78	54.68	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	5.6e-78	54.51	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SKZ2	2.4e-76	52.81	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of Spg000236 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K4S7	1.5e-137	87.14	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111490755 PE=3 S...	[more]
A0A6J1GZY2	1.2e-136	86.79	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111459188 PE=3...	[more]
A0A540MJ72	5.2e-127	78.85	Poly(A)-specific ribonuclease OS=Malus baccata OX=106549 GN=C1H46_015480 PE=3 SV...	[more]
A0A5N5GIF7	1.2e-126	78.49	Poly(A)-specific ribonuclease OS=Pyrus ussuriensis x Pyrus communis OX=2448454 G...	[more]
A0A540MJ75	7.5e-126	78.42	Poly(A)-specific ribonuclease OS=Malus baccata OX=106549 GN=C1H46_015481 PE=3 SV...	[more]

BLAST of Spg000236 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22250.1	4.7e-112	72.59	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44260.1	1.1e-108	68.73	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	2.3e-79	54.68	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	2.3e-79	54.68	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.3	2.3e-79	54.68	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 22..145 e-value: 2.3E-7 score: 30.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 6..279 e-value: 1.1E-92 score: 312.0
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 14..280
None	No IPR available	PANTHER	PTHR10797:SF48	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED	coord: 14..280
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 11..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000236.1	Spg000236.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity