Spg000197 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg000197
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionL10-interacting MYB domain-containing protein isoform X2
Locationscaffold6: 23424469 .. 23429845 (+)
RNA-Seq ExpressionSpg000197
SyntenySpg000197
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACAAGACTTTACTATTTCGTCTCTTCTCCACGCCCAATTAGCCGCCATTGCTAGAAAGGTTATTTGCTTGAAGCATTTTTCCAATTGCACTCATCCCTCTTTCTCTTTCTCACTTATTCCTCACATCACTTTTCTCCTTCACATGAGGAATACATTGAAGTCTTCAATCACAATCTCTTGATCCAGGGCTTTCTAAGGTTTTCTCTCTGTTTCCTCGTCATTCTGAAATCTGAATCAATACATTTGCATGTGCTTTTGTTTCTTTTATATAGAGCTTTGCATTGGCAATGTGGTGCGTTTTTTTTTCAATCTTTTCATCGTCGTCTAATTGGAGGATAAGAGGAACATTTGGATTAGGCTAGTTGTTAGGGTTTTGCAGCTTCATTAGATAGAAAAATAGTTGAAAGACTATTGTGACAGATAATTTCTGTAAGGTAACACAGAAATATTGAAGTATGCTAGAGGATCAGTCCCTTTTTACTTTCTTTTTTTTGCTTTTATGATTGTTTGTTGCGCCTATTGAAAGAAAATTTAACATCTTACAGAACCTTCAAATTCTCCAACACTCTGTTTTAGTGTACTCTTTTATCAAATGCCATGATAAATTAGGTGCTTTCAGCATTGGGAGTGGGAAATTAACTGGAGTAAGATAGCTTGTTTTAGTTAATTAATTTGTATAGTTTTAATATTAAGTGATCATTGCAATTTTAATTAGTTTGATTTATTTTCAAGTTTTATTTTCCATGTTCAGAGTGACCATCTACAATGTTTATTTGGTTCTAAGACAATTTCTAGAATACCAATGGGGCAACTTTTTTTTTTTTCCTAGATAACCATGAAATTTGTTTATATGGATTGCTTTCCATCTTATTACCAACCTGCTGTATCAGCTTTTCAATTGCTTTTGATCGATGGAGTTTCGATTAACACATTTTAAGCAGATTTTCTTGTAACCAATGTTTCAGAATCTGTGTTTGTTTGTTGCTGCTGTGTGCAAAGCTTTCTATAGTTTCAAAGGAAGTATAAAGAATTGCCAAATCTGAGAGAGAAGAACAGGGGCCAATTAAAGAACCTAATTAGGACACAATCAAGCCATGACAACAGATGTTCCTCAGCCAAACAAGAAGCAGGATGGTACCTCGGACTCCATTTCCATTGGAGCAGTGATTAAAGCTGTCCAAGCATTACCAGACATGGATGAAGACCTTGTATTAGACGCCTGTGATTTCCTTCAAAAGGAAAATAACGCCGAAATATTTACTGCATTGGATGTCAAATTTCGAAGAAAATGGTTGATAAGAAAACTTCGTCCACAGGTCTGGTTTCTTCTAATGCAAGAACTTTTTTATGGTTTTCTTTTTGAAAAACATGTTTAAGAATGTTGGTAGTAATTTCGATCCACTTTTGTCTTGAACAGACCATGTTTGTGAAGATTCATCATATCAAGAAAATCGTTTTAGAGGTTCTAAGCTCAGAGACGATATCTGATGTGAAGGCTAAAATCGAAGAAAAGGAAGGTATACGTCAGAAACAACAACGGTTGCTTTTTAGAGGTCGTAAGCTTGAAGATCAAAGAACTCTAGCAGACTGCGGTGTTCAGAATGACTCTGAACTGTTCTTGGTGCTTTGTCTTTGTGGTTGTTAGTGGTGTTTTTCTTTGGAGGGTTCACGGTTCTGTTCGGTAAAATCAAATTGTGGCCATCAATTTGCTATGTAAATTGAAATTTAGACTCGGTTTTATATAGTGTTCACGGTTCACTATCAAAAGTTAGAAGTACGTAAAAAGATAAATTGATTCGAAAGGTTGGTGAGTGGTTAGATAGAAATTAATTTGTCGGTATTAATAGATTTTGTAATTAAACATGCAAGTAACCTGGTGTCGACCTATTTGGCAAACAGAGAAAGTGGTCGTACAAGATGCTTTCGAGACTTATTTTTCATCCTTATTCTCTTCGGGGAATCCTGTTCAGGGGGATTTGGATGTAGTTCTTAATTGTGTCCCTCTGAAAAGTTACGGAAGCGATGTACCAGATGCTAATGGCACCCTTTTCGAGGGAGGAAGTGTATTATGCAATTAAAAGCTTTCATCCGACGAAGGCCCTGGGTCCAGATGGCTTTCCTGCAATTTTTTATCAGAAATATTGGACAATAGTGGGGGATACCACGGTAGCGAATTGTTTGGCTATTTTGAACTCAGGCGAATCGATTCGAGATTGGAATCATACAAATATTGTGCTAATCCCAAAGCTTCGTCAAGCAAGGTTAGTATCTGACTACAGACCTATTAGTTTGTGTAACGTCTCGTATAAAATTGTCACTAAAGTCATAGCCAATAGACTAAAGCATGTATTGGGTGAGATTATAGACGAATGTCAGTCTGCTTTTATTCCTGGTAGATCTATATCGGATAATATGATTTTGGCTCATGAAACTTTACACTATCTCCAAAATAGACGTAAAGGAAAAGTTGGGTATGCTGCCTTAAAACTTGATATGAGTAAAGCTTATGATAGGGTGGAGTGGTCTTATCTGAGCCAAATTATGGCTAAACTGGGTTTTAATGAGGACTGGATTAAATTGATTATGAAGTGTGTCTCAATGACCACGTTTTCTATTCTTATGAATGGAGAATCTTTTGGTTTCATTCAACCATCCAGGGGATTAAGGCAGGGTGACCCCCTTTCTCCTTATTTATTTCTGATCTGCACGGAAGGACTCTCTGCTTTGTTGGTTTCTGCAAGGAATAATTATATGGCAGGCGTTTCTATTGCACGGGCTTGTCCCAAAGTATCTCATTTATTTTTCGCAGATGATAGCCTAGCCTTTCTCAAAGTAGCGGCTGCTCATTTTGGTCATTTTAAGACTGTTTTACAAACTTACGAGATGACGTCAGGTCAGTGTGTTAATGCCCAGAAGTCAACAATGTTTTTCTCAAAAAATGTTCCGGTTGACTCTAGGCAGTATCTGTCTAATATATTGTCTATGGATGCATCGGAGTCTGTGGGGAAGTACCTCGGTCTTCCGTCTACTTTCCACAGAGGAAAAACACGAGATTTCCAATTTTTATTAGATAAGGTGTGGTCTTTGTTGCAAAGGTGGAAGAGGCAACTTTTTTCTCAGGGAGGAAGGGAGGTGTTGATTAAAGCCATCATTCAGGCTATTCCTACATTTGCGATGGGTTGTTTTAGAATTCCCAAGGGTATCTTATCAAAAATTTCGGCTCTTTGTGCCAAATTCTGGTGGGGCTCCCAAGGGGATAAGAGGAAGGTGCATTGGCGACGTTGGCAGGATCTCTGTAAACCAAAAGAGATTGGTGGGTTGAATTTTCGTGATCTGGTTAACTTTAACCAGGCTATGCTTGCGAAACAGGTCTGGAGGGTTTTGACTAAGCCACACCTCACAGTATCCAAAGTTTTAAGGGGGAGATATTTTCCGCACTCATCGGTCTTGGATGCGCCCCTAAAGTCTTCTTCTTCTTTCTTCTGGAAGGGCTTTGTGTGGGGGAAGGATTTGTTAAAAGCTGGTATCCGGAAAGATCTTGGAAATGGGCTTTCCATTAATTTATTTACAGACCCATGGATTCCCCATCCAAGTACCTTTAGAGCGATTTCTCCGTCCAATGATTCCGTGGTAAATGTTGTTGTGGCAGATTTTATTACTCCATCATATCAGTGGGATGTTGTGAAGCTTAACCAGTGTCTGGTAAAGGAAGATGTTGAGTTGATCCTTAGCCTTCCAATTAGTAGTTCTGCCTCTGATAGATGGGTATGGCATTATGATTGTAGGGGTGAGTACTCTGTTAAGAGTGGATACAAGCTCAGTATGATGATTGATCAACAGGCAACCTTATCTGACACTTTGAGAGAGATGAGGTGGTGGAAGAAAATCTGGAAATTGAGTGTGCCTAGCAAGGTCAAGATTTTTGTGTGGCGGTCATACAACAATTCAATTCCAACAATGGTCAATCTTCGCAATCATCATGTTCCGGTCGAAGGTATCTGCCCTATCTGTAAGGAGGAGATGGAGACTTCGGATCATGCTCTCTTTCAGTGTTCGAGAGCTCTTGCGGTTTGGGGAATAATATCTCCAATTATGATGGCAGACTGTAGTGAATATTTTGATATTAAGGACCGATGGTTGCGGCTAGCAGAGGACTCGAGTGTATGTCTAGAGCGTATTTGTGTTGGGGGCTTGGGCTATCTGGAATGACAGAAATAGCCAGGTTCATAACATCCCCGTTCCAACTGTAGAGATGCGCTGTGAATGGATTATCGAATACTTGAACGAGTATTGGCAGGCAAATCCGAAAGGTTCTGTAAATATTAAGAATGTGGAGGATGTGCACCATATTATTTCAAATGGAGAAGATTATATCTTGAATTCTGATGCAGCGTTTCTGGGTACTATGCGAGCTAGTGGGATTGGATTAGTTTTGCGAGATAAATTCGGTCATCTGAAGGCCGCACAATCTTCACAATCTCATGTTTATACTTCTCCGTTAGGGGCGGAAGCTATTGTTGTTCTCCATGGTCTTTATATGGCTAAAACGTTGGGGATAAATCGTGTAACGATCTTGTCCGATTCTCTGAAGTTAATCAAATTAGTCAATGCGGAGATTCAATGTGAGTCTTGTATATCGACTACTATCTGGGACATCAGGGAGATTCAAAAATCTTTTGATAAGGTGAGTTTTAAGTTCGTTGGTCGTCAGTTTAATGGCATTGCTCATAAATTGGCTCGGGATGGGTTAGAGTCCTTACCTTTCTTCTTGTCAGAAAACTATCCTTCGTGGATGATCAAGTTGTCGTGTAAAGAGCGATGTATGTTTGCTTCCCTTAGGGGATGTCATGATTCTTAATGAAGTACATTTTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGGTGTCGGCCTATTTTGCCTAAATGAACTCTTGGGGATAAGCTATTCACAGTACAGCGCTATGTGTCACAATCGTAACTCTTCATCCGTGCGGTGTCATGATCTTCGCCCGATCGTGGCCAACCTAGAGGCTAACTCTAACCCATACATTCTTTTCACCAGTCTTTTTGCTTTGTCAGATCTTAGGCGAGGTTCTTTCATCCTCAATTGAACTTACTTTTTCTTTTGCTTAACGTCTCAGCTCAAACATTCACTTAAACATGTTGCATGCATGAGCATTCTTTCACCCGTCGACAACATCGTATAACCAATTGCTTTCAAATCAGCGCTTGTAACTTAACTTGCTCTCGACAATTCATGTCACCCCTTATGCATTCCAACTCTTCCTTATGACTCTAATCTACTTGCCTTTATACTAGGCCAAGTCCCATGGCTCGACTTTGCCTCAAAGTCTTTGTAA

mRNA sequence

ATGACAACAGATGTTCCTCAGCCAAACAAGAAGCAGGATGGTACCTCGGACTCCATTTCCATTGGAGCAGTGATTAAAGCTGTCCAAGCATTACCAGACATGGATGAAGACCTTGTATTAGACGCCTGTGATTTCCTTCAAAAGGAAAATAACGCCGAAATATTTACTGCATTGGATGTCAAATTTCGAAGAAAATGGTTGATAAGAAAACTTCGTCCACAGTACAGCGCTATGTGTCACAATCGTAACTCTTCATCCGTGCGGTGTCATGATCTTCGCCCGATCGTGGCCAACCTAGAGGCTAACTCTAACCCATACATTCTTTTCACCAGTCTTTTTGCTTTGTCAGATCTTAGGCGAGGCCAAGTCCCATGGCTCGACTTTGCCTCAAAGTCTTTGTAA

Coding sequence (CDS)

ATGACAACAGATGTTCCTCAGCCAAACAAGAAGCAGGATGGTACCTCGGACTCCATTTCCATTGGAGCAGTGATTAAAGCTGTCCAAGCATTACCAGACATGGATGAAGACCTTGTATTAGACGCCTGTGATTTCCTTCAAAAGGAAAATAACGCCGAAATATTTACTGCATTGGATGTCAAATTTCGAAGAAAATGGTTGATAAGAAAACTTCGTCCACAGTACAGCGCTATGTGTCACAATCGTAACTCTTCATCCGTGCGGTGTCATGATCTTCGCCCGATCGTGGCCAACCTAGAGGCTAACTCTAACCCATACATTCTTTTCACCAGTCTTTTTGCTTTGTCAGATCTTAGGCGAGGCCAAGTCCCATGGCTCGACTTTGCCTCAAAGTCTTTGTAA

Protein sequence

MTTDVPQPNKKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIRKLRPQYSAMCHNRNSSSVRCHDLRPIVANLEANSNPYILFTSLFALSDLRRGQVPWLDFASKSL
Homology
[Close]
BLAST of Spg000197 vs. NCBI nr
Match: OMO82032.1 (hypothetical protein COLO4_23291 [Corchorus olitorius])

HSP 1 Score: 98.2 bits (243), Expect = 5.6e-17
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           KK DG S+SISI  VI AVQALPDMDEDL+LDACDFL+ E  A+ F ALDVK R+KWL+R
Sbjct: 428 KKDDGNSNSISIENVITAVQALPDMDEDLILDACDFLEDEIKAKTFLALDVKLRKKWLLR 487

Query: 70  KLRPQY 76
           KLRPQ+
Sbjct: 488 KLRPQH 493

[Close]
BLAST of Spg000197 vs. NCBI nr
Match: XP_019197395.1 (PREDICTED: L10-interacting MYB domain-containing protein [Ipomoea nil])

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-16
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 0 

Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           +K+D  S+S+SI  VIKA+QALPDMDEDLVLDACDFL+ E  A+ F ALD+K R+KWLIR
Sbjct: 471 RKEDEGSNSVSIEHVIKAIQALPDMDEDLVLDACDFLEDEKRAKTFLALDIKLRKKWLIR 530

Query: 70  KLRPQ 75
           KLRPQ
Sbjct: 531 KLRPQ 535

[Close]
BLAST of Spg000197 vs. NCBI nr
Match: XP_034690818.1 (L10-interacting MYB domain-containing protein [Vitis riparia] >XP_034690819.1 L10-interacting MYB domain-containing protein [Vitis riparia] >XP_034690820.1 L10-interacting MYB domain-containing protein [Vitis riparia] >XP_034690822.1 L10-interacting MYB domain-containing protein [Vitis riparia] >XP_034690823.1 L10-interacting MYB domain-containing protein [Vitis riparia])

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-16
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 11  KQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIRK 70
           K D TS SISI +VI+AVQALPDMDE+LVLDACDFL+ E  A+ F ALDVK R+KWLIRK
Sbjct: 468 KDDETSGSISIESVIEAVQALPDMDEELVLDACDFLEDEKKAKTFLALDVKLRKKWLIRK 527

Query: 71  LRPQ 75
           LRPQ
Sbjct: 528 LRPQ 531

[Close]
BLAST of Spg000197 vs. NCBI nr
Match: XP_031100307.1 (L10-interacting MYB domain-containing protein [Ipomoea triloba])

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-16
Identity = 45/65 (69.23%), Postives = 55/65 (84.62%), Query Frame = 0 

Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           +K+D +S+S+SI  V+KA+QALPDMDEDLVLDACDFL+ E  A+ F ALD K R+KWLIR
Sbjct: 470 RKEDESSNSVSIEHVVKAIQALPDMDEDLVLDACDFLEDEKRAKTFLALDFKLRKKWLIR 529

Query: 70  KLRPQ 75
           KLRPQ
Sbjct: 530 KLRPQ 534

[Close]
BLAST of Spg000197 vs. NCBI nr
Match: XP_022154442.1 (L10-interacting MYB domain-containing protein [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 3.7e-16
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = 0 

Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           KK D  S SI I  VI+AVQALPDMDEDLVLDACD L+ EN A+ F ALDVK RRKWLIR
Sbjct: 424 KKNDDNSGSIPIETVIEAVQALPDMDEDLVLDACDLLEDENKAKTFIALDVKLRRKWLIR 483

Query: 70  KLRPQ 75
           KL+PQ
Sbjct: 484 KLQPQ 488

[Close]
BLAST of Spg000197 vs. ExPASy TrEMBL
Match: A0A1R3IHH4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_23291 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.7e-17
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           KK DG S+SISI  VI AVQALPDMDEDL+LDACDFL+ E  A+ F ALDVK R+KWL+R
Sbjct: 428 KKDDGNSNSISIENVITAVQALPDMDEDLILDACDFLEDEIKAKTFLALDVKLRKKWLLR 487

Query: 70  KLRPQY 76
           KLRPQ+
Sbjct: 488 KLRPQH 493

[Close]
BLAST of Spg000197 vs. ExPASy TrEMBL
Match: A0A5B7B8U3 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_034265 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.9e-17
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           KK D TS+SISI  VI+A+QALPDMDEDLVLDACD L+ E  A+ F ALDVK R+KWLIR
Sbjct: 482 KKDDETSNSISIENVIEAIQALPDMDEDLVLDACDLLEDEKKAKTFLALDVKLRKKWLIR 541

Query: 70  KLRPQ 75
           KLRPQ
Sbjct: 542 KLRPQ 546

[Close]
BLAST of Spg000197 vs. ExPASy TrEMBL
Match: A0A1R3H0V8 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22185 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           KK DG S++ISI  VI AVQALP+MDEDL+LDACDFL+ E  A+ F ALDVK R+KWL+R
Sbjct: 657 KKDDGNSNNISIENVITAVQALPEMDEDLILDACDFLEDEIKAKTFLALDVKLRKKWLLR 716

Query: 70  KLRPQY 76
           KLRPQ+
Sbjct: 717 KLRPQH 722

[Close]
BLAST of Spg000197 vs. ExPASy TrEMBL
Match: A0A6J1DLP6 (L10-interacting MYB domain-containing protein OS=Momordica charantia OX=3673 GN=LOC111021712 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = 0 

Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           KK D  S SI I  VI+AVQALPDMDEDLVLDACD L+ EN A+ F ALDVK RRKWLIR
Sbjct: 424 KKNDDNSGSIPIETVIEAVQALPDMDEDLVLDACDLLEDENKAKTFIALDVKLRRKWLIR 483

Query: 70  KLRPQ 75
           KL+PQ
Sbjct: 484 KLQPQ 488

[Close]
BLAST of Spg000197 vs. ExPASy TrEMBL
Match: A0A6P5ZZM5 (L10-interacting MYB domain-containing protein isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111305029 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           KK DG S+S+SI  VI AVQALPD+DEDL+LDACDFL+ E  A+ F ALDVK R+KWL+R
Sbjct: 410 KKDDGNSNSVSIENVITAVQALPDVDEDLILDACDFLEDEIKAKTFLALDVKLRKKWLLR 469

Query: 70  KLRPQ 75
           KLRPQ
Sbjct: 470 KLRPQ 474

[Close]
BLAST of Spg000197 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-15
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 8   PNKKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWL 67
           P K +   + ++SI   ++A+QALPDMD++L+LDACD L+ +  A+ F ALDVK R+KWL
Sbjct: 371 PKKPRVDETQTMSIEDTVEAIQALPDMDDELILDACDLLEDKLKAKTFLALDVKLRKKWL 430

Query: 68  IRKLRPQ 75
           +RKLRPQ
Sbjct: 431 LRKLRPQ 437

[Close]
BLAST of Spg000197 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-15
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 8   PNKKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWL 67
           P K +   + ++SI   ++A+QALPDMD++L+LDACD L+ +  A+ F ALDVK R+KWL
Sbjct: 371 PKKPRVDETQTMSIEDTVEAIQALPDMDDELILDACDLLEDKLKAKTFLALDVKLRKKWL 430

Query: 68  IRKLRPQ 75
           +RKLRPQ
Sbjct: 431 LRKLRPQ 437

[Close]
BLAST of Spg000197 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-14
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 21  IGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIRKLRP 74
           IG  + A+QALPDMD++L+LDACD L+ E  A+ F ALDV  RRKWL+RKLRP
Sbjct: 741 IGNALDALQALPDMDDELLLDACDLLEDERKAKTFLALDVSLRRKWLVRKLRP 793

[Close]
BLAST of Spg000197 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-14
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 21  IGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIRKLRP 74
           IG  + A+QALPDMD++L+LDACD L+ E  A+ F ALDV  RRKWL+RKLRP
Sbjct: 718 IGNALDALQALPDMDDELLLDACDLLEDERKAKTFLALDVSLRRKWLVRKLRP 770

The following BLAST results are available for this feature:
BLAST of Spg000197 vs. NCBI nr
Match NameE-valueIdentityDescription
OMO82032.15.6e-1772.73hypothetical protein COLO4_23291 [Corchorus olitorius][more]
XP_019197395.11.6e-1670.77PREDICTED: L10-interacting MYB domain-containing protein [Ipomoea nil][more]
XP_034690818.12.1e-1675.00L10-interacting MYB domain-containing protein [Vitis riparia] >XP_034690819.1 L1... [more]
XP_031100307.12.8e-1669.23L10-interacting MYB domain-containing protein [Ipomoea triloba][more]
XP_022154442.13.7e-1673.85L10-interacting MYB domain-containing protein [Momordica charantia][more]
BLAST of Spg000197 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg000197 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1R3IHH42.7e-1772.73Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_23291 PE=4 SV=1[more]
A0A5B7B8U37.9e-1773.85Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_034265 PE=4 SV=1[more]
A0A1R3H0V81.8e-1669.70Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22185 PE=4 ... [more]
A0A6J1DLP61.8e-1673.85L10-interacting MYB domain-containing protein OS=Momordica charantia OX=3673 GN=... [more]
A0A6P5ZZM51.8e-1670.77L10-interacting MYB domain-containing protein isoform X2 OS=Durio zibethinus OX=... [more]
BLAST of Spg000197 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G02210.11.9e-1553.73unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.21.9e-1553.73unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G24960.12.8e-1464.15unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G24960.22.8e-1464.15unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46929:SF19MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 9..73
NoneNo IPR availablePANTHERPTHR46929EXPRESSED PROTEINcoord: 9..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg000197.1Spg000197.1mRNA