Spg000166 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000166
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease P
Location	scaffold6: 23474279 .. 23484318 (+)
RNA-Seq Expression	Spg000166
Synteny	Spg000166

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATTGCATTTCAATCAGCAGCACTTCAATACTCTCCTCTACCTCTGTTCTACCGCGATTTCAGACCCGTCTTTGAAAGAATCTGCGGTGAGTTTCGGGTTTCGTGTATATAATCACTTGTAATCTGTTGTTGTTGTTCCTAATGAGGCTACAGTCACTGCTGTCGCCAGACTTGCCGCGGTGAAAGGGGATGGCGATTGTGCATTTGAATTGGTGAAGACCATTGGTAAGCATATGAGTATTTGCACAAACTGAGACGCTCTGTGAAGTGTGTAAGTGAGACCACTGCTAAGGCTGTTGAGGATTGCCTCTGATGTGGGTGAATTGAGTTTGGATTTGGGTCTGATCAAAGAGTCAGTGTTAAGTAATGGAGTGTTGAAATATAAACTTGATTTTGGATAATTAGAATTTGGGCCTAGCCCAAATAAAAGCCCAAATTTTAGAAATGTCTTAAGTAGAAGAAAAATCTAGAGAAATCCTCTAGGAAGATTTTTGGAGTATATGAGTAGAATTCTCTAGAATATTATAGAAAATTGTGTGTTCTAGAGAATAGTTTGTAGCCACAAGATTATAGTTGTGTGTTGGCAAAATCCTAACCACAAATTGAGGAGGTGGAAACTAGTATAAATAGGAGTGATGTCTCAAAGTTTTTGTATCAAGCAAAAAAGCTATAATTGAGCAATAATACAAGTAGTCTCTTTCTCATAACCTCTTTCTCAAAAATTCATCTTTCAAGTTTACCTCCAATCTCCAAAAAGTTTCTTTCCAACAAAGTGGTATCAGAGCTTGAAGATCCTTGCTAAAAAGATGGCTAGCAACGGCATGGTCCCATTCCAAGTTCCAATGCTCAACAAGAGCAACTATGATAATTGGAGCATCAAGATGAAGGCTCTCCTTGGTTCGCAAGACGTATGGGAGATAGTAGAGAAAGGATACACCGAGTCAGAGAATGATGGTAGTCTTTCTCAAGCACAAAGGGATGGTTTGAGAGACTCAAGAAAGAGAGACAAGAAGGCTCTCTATCTAATCTATCAAGGATTAGATGACGATGCTTTTGAGAAGATTTCAGAAGCAAAGACAGCGAAAGAAGCATGGGAGAAGCTTCAAACATCATACAAGGGAGCGGATCCCGTCAAGAAGGTACGTCTTCAAACTTTAAGAGCCGAGTTTGAAACTTTGAATATGAAAGAAGGGGAAGCCATCTCCGACTATTTTTCTAGAGTTTTAACGGTCACCAATCAACTTAAGAGGAATGGTGAAAAGCTTGATGATGTAAAAATCATGGAGAAAATATTAAGATCTTTAGATCCAAAGTTTGAACATATTGTTGCCATAATCGAAGAAAGAAAAGACTTGAATGTTATGACCATTGAGCAACTTTTGGGATCGTTACAAGCATACGAAGAAAAGAAAAAGAAGAAGGAAGGAATCATGGACCAATTACTCATGCTACAAGTTGACTCACCTACTGGAGGAGGTAGTCAGAGTGATAAAGGCCAACAAGGACGAGGTCATGCTGGACATCGAGGACGAGGACAAAGTTTGAGGCCCTATGAAGACAACAACAATTTTCAAAGAGGAGAAAACTCAACAAGAGGTCGTCGGCCAGGCAACTCAAGATCAAGGTGCGATAAATCAAACATTAAATGCTACAATTGCCAGAAGTTTGGTCATTATGCCTCTGAATGTAGAGCTCCTAGCAACAAAAAGTTGAAGAGAAGGCAAACTTCATTGAAAGGAGTCAAGAATGTGACACCTTATTGATGGCTTGCACGGACAATGAATGGAACAAAGATAATAAATGGTATCTAGACACTGGAGCAAGCAACCATATGTGTGGAAAAAGGAACATGTTCGTGGAACTTGATGAATCGGTGAGCGGCAATGTAGCCTTTGGAGATGAATCCAAGGTGGAAGTAAAAGGAAGAGGTAACATTCTTATCCGATTGAAGAATGGTGAGCATCAATTTATTTCAAATGTTTATTACGTGCCAAGTATGAAGAGTAATATCTTGAGTTTGGGCCAACTCTTAGAGAAAGGTTATGACATTCAATTAAAAGATAATAACCTTTCTATAAGAGACAATGCAAATAATTTGATTGCTAAGGTGCCAATGACAAAAAATAGAATGTTTATACTCAACATTCAAAACGACGTAGCAAAATGCTTGAAGATGTGTTATAAAGATGCATCTTGGCTTTGGCATCTTCGATTTGGGCATCTCAATTTTGGAGGATTAGAATCGCTCTCCAAGAAGAACATGGTGAGAGGATTACCTTCCATCAGCCACCCTGATCAAGTGTGCGAAGGATGCCTACTTGGAAAGCAATTCAAGAAAAGCTTCCCAAAAGAGTCCAACTCAAGAGCTCAAAGGCCTTTGGAACTCATTCATACGGATGTGTGCGGTCCAATCAAGCCAAGCTCACTCGGTAAGAGCAACTATTTCCTTGTTTTATTGATGATTTTTCAAGAAAAACATGGGTGTATTTCTTGAAGCATAAGTCAGAGGTGTTCGAGAATTTCAAGAAGTTCAAAGCCCTTGTTGAGAAAGAAAGTGGCTTAGTCATCAAGGCCATAAGATCTGATCGTGGAGGAGAGTTCACATCAAACGAATTCCAAAAATATTGTGAAGACCATGGAATTCGACGACCCTTAACAGTGCCAAGATCTCCCCAACAAAATGGTGTGGCAGAAAGAAAGAACAGAACAATTCTCAACATGGCAAGAAGTATGCTCAAAAGCAAGAAGCTTCCAAAGGAGTTATGGGCAGAAGCGGTGGCATGTGCAGTCTACCTATCCAACCGATCTCCAACAAGAAGCGTACATGGAAAAACACCACAAGAAGCCTGGAGCGGAAGGAAGCCTGAGATTTCTCATCTCAGAGTCTTTGGAAGTATTGCTCATGTACACATTCCAGATGAAAAGAGAAGTAAGCTGGATGATAAAAGTGAGAAGTACATATTCATCGGCTATGATTCCAACACTAAAGGCTACAAGCTCTAAAATCCTGATACGAGAAAAATAATAATCAGTCGAGATGTAATATTCGATGAAGAAGGAGCATGGGATTGGAGACAACATGATGAAGACTACAACTTCTTTCCATACTTCGAAGAAAATGACATGGAGCAAACAGTGATGGAGCAAACAAGAGAGGAGCCTTCTACTCCAACAGCTTCACCAACGACTACAAGTTCTCAAGAAGATGAGAACTCAAGTGAAAGAATTTCACGTTTCAGGAGATTACAAGAACTCTATGAGGTAACTGAAAATCATGATAATCTTACTTTATTTTGTCTTTTTGCCGACTGTGAGCCCATGAACTTCCAAGAAGCAGTGAAAAACAAAAATTGGAAAAGCGCTATGGATGAGGAGATTAAGGCGATCAAGAAGAATGACACATGGGAGCTAGTCTCACTTCCAAAAGGGCACAAGGCGATCGGTGTGAGATGGGTTTACAAAACCAAAAGGAATGCCAAAGGAGAAGTTGAAAGATACAAGGCAAGATTAGTGGCGAAAGGTTATAGTCAAAGAGCTAGCATCGACTATGATGAGGTATTTGCGCCTGTTGCTCGACTAGAAACAGTTAGATCAATAATTTCTTTAGCAGCTCAAAACAAATGGAGAATTCATCAAATGGATGTGAAATCTGCCTTCCTCAATGGAGTTCTTGAAGAAGAAGTCTATATTGAACAACCTCATGGCTATGAAGTTGAAGGAGAAGAAGACAAAGTTCTGAAGCTGAAAAAGGCACTCTATGGTTTGAAGCAAGCTCCAAGAGCTTGGAATGCTCGAATAGACAAGTACCTACACGAGAGAAACTTTTTCAAGTGTCCGTATGAGCACGCACTTTACATCAAAGCCCAAAATAATGATGTATTGATTGTGTGCTTGTATGTGGATGACTTGATCTTTACAGGTAATAATCCGAGAATGTTCAACAAGTTTAAGGAAGAGATGACGAATGAGTTTGAGATGACCGACATCGGGCTCATGTCTTACTATCTTGGCATTGAAGTAAAGCAAGAAGAATGGATCTTTATCACCCAAGAAGGATATGCATAGGAGGTGATCAAGAAATTCAAAATGGAGCAGTCTAATCCGGTCAACACACCCATGGAATGTGGGATCAAACTATCAAATCATGAGGAAGGAGAAAGAGTGGATCCAACACTCTTTAAGAGCTTGGTTGGAAGTCTACGATATTTAACGTGTACAAGGCCTGATATTCTCTATGCGGTTGGAGTTGTCAGTCGTTACATGGAGAAACCAACAACCACACATCTGAAGGCAGCAAAGAGAATTCTTCGATACATCAAAGGTACCATAAATTATGGTTTGTATTATTCTGTTTCTGATGATTCCAAACTCGTGGGATACAGTGATAGCGATTGAAGTGGAGATATAGATGACCGCAAGAGCACAACTGGTTTTGTGTTCTATATGGGAGACACTGCCTTCACATGGACGTCAAAGAAGCAACCAATTGTTACTCTTTCCACGTGTGAAGCAGAATATGTAGCTGCTACCTCATGTGTTTGCCATGCAATTTGGCTAAGGAATCTACTAGAGGAGTTGGGCTTATCACAAGAGGAGCCAACCAAGATTTTCGTGGACAACAAGTCAGCAATTGCGTTGGCAAAGAACCCAGTGTTCCATGATCGGAGTAAGCACATTGATACACGTTACCACTATATCAGAGTATGCATCACAAGAAATGATGTACATTTAGATTACGTGAAGTCTCACGATCAAGTTGCCGATATCTTCACCAAGCCACTTAAAAAAGACGACTTCATAAGATTAAGAGATTTGTTGGGAGTAACAAAATCAAGTTTAAGAGGGGGTGTTGAAATATAAACTTGATTTTGGATAATTAGAATTTGGGCCTAGCCCAAATAAAAGCCCAAATTCTAGAAATGTCTTAAGTAGAAGAAAAATCTAGAGAAATCCTCTAGGAAGATTTTTGGAGTATATGAGTAGAATTCTCTAGAATATTATAGAAAATTGTGTGTTCTAGAGAATAGTTTGTAGCCACAAGATTATAGTTGTGTGTTGGCAAAATCCTAACCACAAATTGAGGAGGTGGAAACTAGTATAAATAGGAGTGATGTCTCAAAGTTTTTGTATCAAGCAAAAAAGCTATAATTGAGCAATAATACAAGTAGTCTCTTTCTCATAACCTCTTTCTCAAAAATTATCTTTCAAGTTTACCTCCAATCTCCAAAAAGTTTCTTTCCAACATGGAGGTGGTTGGCATGGAAAGAGGTGGCTTGGGAAGGGAAAAGAACAAATGTTGATTCCAGTGGCAAATGCCGCTGTTGTGCTGAGCAATTGGTCTCTGTCGATATTAGTTGTGCTGAGACGGAGAGCTTTGCTCAGTCTTTGGCTGCACTTGCCCTTGAAAGTTGAAAGGGAGACTCAACCGAATTTTAGAAGCTTTCAGGTTTGCCAACTTCTACTCGTGTATTGTTATGTTTGTGAAGATCTTGTATTATTATGTTCGTATAGTCTAGATATCACCCCATGACATACGACCTTTTGCCTTAACAATGTTATTTTGTTTTATTTAAGGAATGGTTAGAAGTACATAATCAGTTTGATGCTATTATCGATGGAGCAAATGTTGGCCTCTACCAACAGAATTTGTCTGATTCTGTTGGATTTAATCTTCCTCAGGTTATAAAGTATATTTTTGTCCTTTTTTTAATTTTAAATTAGGCAATCTCTTCAACTTTCCATCATATTGTTTTTCTTAAGAAATATTATTCATCATGCATTTGTTCACCTAACTTCAATAGAGCAGGTTGAGGTCGTTGTCAAAGAATTATGTAAGATATGCGGAGGGAAAAGGCCATTAGTTTTTTGGCACAATAAATGCACCAAGGCTCTATTCGATAATTCTTCACAAAGAAGCATTGTTGAGGAATGGATAAACAAAGGTGTTGTTTATACAACGCCCATTGGCTCAAATGACGATTGGTATGCCCTTGACTATTTTTTTTTGTTTTTATCCGTGAGTGTCCGGACCAACTTACGCGCATCTCGACTAATCTTACGGGACAACCGTCTGACCCTACTACATTTGGTTGCCAAAGAAACTCGTAGGATATTAAATCTTAAGTAGGTGACCACCATGGATTGACCTTGACTAATAATTCTAGAACTCATTTATAATAATAGCTCCTTGTTTAAGATGTGAAGCTTTGGACCTGACAAGTTTTTGTTTACTGAAACCTGGTAATTGCGTCAACTTCAATGCCTCCAAACTATAGTTGCTCATATTCTTTTACCATATACAATATAGGTATTGGCTTTATGCTGCTGTATAAAATTGAAGTGCTTGCTTGTGACAAATGACGAATTGCGAGATCATATTTTTGAACTTTTGAGAAACGACTTGTTTCACAGGTGGAAGGAGAAACATCAAGTATGTGTTATCGAGATAAACCTTGCTCTGCAGATAATTAATTACTTATCGGAATTTGTATGTTCTCATGCAATTGTTGTATCATGTTTTGCAGACTTGAGATGCCACCTCTTTACTCTATTGTAATCCAGGTATCTTTTGCTTTCCCCATCTTGTCCCTTGATTTCATAATTTACACGTGTTTTTACTCGTTTGAACTTTTGATTTTACTTGAAAATTGATAGTAATAACTTTTTAAACAAACTTTGACTAAGATTTCAAAAATGTTTCAGGAATCAGACACAGGATCCTGGCATATTCCAATCGCAGGCAATGACACTGAACGAGAACAAACTTGGTTGTGTTACCAGGCCAGGTGTTTCTGAAACTTCTGAAACTTCTGATAACCATGTGCATCAATGAGTGTGTCAAGTTATAATCAACTGCACGATTCAGCCATGGCACGTAAAAGAAAAGAGAGGCCCTCGTCAACCTCATAGCTACATATCATTGCCTAAGGGCCCGTTTGGTTTAAGGTTTTATAGATATCTGGGAATACATGATGCCTGGGAATACTATGCCTGGGAATAAGATTGCTGGGAATCAAAGATAACTAAGATTGCTGGGAATCAAAGATAACTGTGTTTGGTTCTGCATGAGAATGTCATCAGAATTTTATGAGAACAAATTATGTCTGTATTTATTTTTTAGAATTAATCGGGTAAACTTTATGTAATTTTAATAAATTAATCAATAAAATAATCAAAATTTCAAACTATTAATAAAAATTAATGAAATAATAATCATGAAATAATTTTAATGGGATAAACTATGTTAATTTAACAAATTTAAATTATTTAATTAATTTTTTAATAAATATCTTTAACTACAATAATTTAATATATTGTATCCATAAAAATTAATTAGATAAATATTTAATAATAATATGATTATTTATTTATTATAAGGAAATCCAAAAAAGTAATTAATTGATTATAAATAATCGATAAGTAATTAATTATAATTATTGAAAAATTAATTTTTATACTAAATTCATTTAAATGATTTTAATTCAATAATTAAATATATTTTCGATAATATTAACTAATTAATTATAATTTTAGTAAATATGTAATTACATCCCTTTAATAAACTTGGACTAAGTATTTGTTTAAAAATCCTAAAAAAAAGTATTTGTTTAAAAAAAATTGAAATTCTTGACAAATTATTATTTAATCTAATTAAATAATTTATTATATTATTTTTAATTTAGTATCAATTAGTTAATTAATTAACTATATTCAAAATAAAATTGCATATAAAAATAAAAAAGAAGAGGTGGGAAAAGAGAAAACTCATGCTTTTGCAAGGACATAGAAAGTCCTTGCTTATGGGCATAAATGATGTCTGGGAATGTGTTATTTCCTAGGCCCACCACAAAAATCTTGAAACAAATAAGGGTATTAGAAACCCTTGCCCATTCCCATCTCCAAAAATCCTGTACGAAACGACTCCTAAGAGTCTACAAAAACATCTTAACTTGCTTGTTTCTGCATATAACAGCCATCAATGGCGGCCAGGTCCTTTACAGAACAACCAGCAATGGCCTTCTGTAAGTTTTCTGGATTCTGCACAGATAGGTGGTATTCAGCAGATAGCAAGGTTGATTATTCTTTGTCCCCAATTTTTTGATCTGCCTCATTTGTTAGGTTGATTTAGTTGGACGACGACAATGTTGTATCTTATCTTGTTAGAGTCCCCTTCTTTTTTTAATATTATCTTCACGGCGCTGTTCTATTTTAATGGCTTTCTTTCTCCTCCCAACTCTTTTTGTAGGGTTCAAACGCTTCATGTTGTAACTTTTTTTCTTTGTTCAAACAAATGATATATTCTTATATTTTATTTGATAATAATTGTAGATTTACTTCTTCTTTTTTCTTTTTTGAAATTGCATGAGGGGGCAATTAGCATTTTTTCCTAATTGCAAATATAGCACAGTGTAAAAATAATAGCAAATATGAAAATTTATTGAAATCAAATTCCATAATATCTGTTTTACCCCTATTTAATTTTGAATTGTGTGTGAATTTTATCAATTTTCGTACATTTCTTTCTATTAGTGTCTATCACTGATATACTTTGATAATTGAAGTCTATTACTGTCTATCACTCCCTAAACATGCCCATGGTTATCAATTTATAACACACCAAATAAGTTTCAACCATAGGTGGATCTACGTAGGGACTGGAGGAGACACGTGCCTTTCTCAAATTGAAAGAATATATATATATATTAGTGTTTTATCTCCCCAAATATCAAAATTTGCCTTTAATTTTGTTGGTTTCTACCCAAATAAACAGACATTTCTTATTTTTTAAATAAAAAACACATTTATTTTTAGTAATTTAGACTTTTTATAGTCTCTCCACTAAAAATCAAGTTTTATTTTCTTTGATTCATTCACTCGATAAAAAATATGAATAATATATAGTCTTATAGTTTAAAAACTATTTTAATAAAAAAAGTATATATTCAATATTTTTTAAATAAAAAAGGTCCACTTTAATCCGGCGAGGGTTTTTTAAATATGAATTTTTCCACTCCGTTTTGAGGGTTTCCTCTCGTATGAGGGCTTCCCTTCGTGGTCTGAAGGCTAGGGTTTCCGGTGGTTCCATTTTAATCCGGCGAGCGTGCGGCGGAGGCGGGTGATCGGCGAGCAAGAGGCTAAGATTCATCGTTTGTGAGGCGGCGGCGGTTGTGACCAGATTACAGTGGGTCGGTTTCTTGAATCAGTTGTGAGGCGTGGCGGGCTTGCGGTTGAGCAGAGGGCAGATTCCGGCGTGAGCGAGGTGGTGAAGGCGGTCGGAGAACAGGGGTTTGTCGTTGGTCGTGAGGCGGTGGCGGTCTCTTCGGCGAGTGGAGGAGGTGGTGCACGCGTTTTCGGCTGAGGCGGTTACAATGATTTTCGGTTTTCTGCAGGTTGTGGGTTCTTCAATGCGTTTTCTTGGTGGATTCATGTGACTTTGGTTTCGGTTGTTTTGGATGTGAGTGTGTGTTTTGCTGAGTGTGATTTGTTTTGTTGTGTGGGCTTGATTGCCGTGGAGGGTTTCGGGTGTGAGTGTAAAGGTTGTTGTCGTGGGAGGTGATGCAGCGGTGAGTGGTTTTCGGCGCACAGGTTGGGTGTGGGTGTGGTTTCTACCTTTACTGTGTTTCTGTTTGTAGTGTGTTTGGTTGAGTGTGCTTGGGTAAAGGGATATTTACGAGGATGGATGACTTGGTGAAGAAGTGGAAGTCGTGGTCGCTTACTGGGGAGGAGGCGGAGGTGGTACGCCCAAGTGTAATACTATCTTCTCTGTCGACGGCAGATTTGGACTTATGTGTGGTGGGTAAGGTCCTGTCGTCCAAGCGGGTCAATCCAGAGGCCTTTCGCAATGTGTTGCGAGCGGCGTGGAGAGTTCACAATGCGACACGTGTGGAGCCGGCTGGAGAGAAAGTCTATGTGATTCAGTTTCGTACCAGGGGTGAAAAGTCGAGAGTTATGGATACTGGTCCTTGGGCCTTTGACCGGTCCCTTGTTGTGCTTAAGGAGCCAAGGGATGTTGCGTCGGTGCTAGAAACAGAGTTTTGA

mRNA sequence

GAAATTGCATTTCAATCAGCAGCACTTCAATACTCTCCTCTACCTCTGTTCTACCGCGATTTCAGACCCGTCTTTGAAAGAATCTGCGTCACTGCTGTCGCCAGACTTGCCGCGGTGAAAGGGGATGGCGATTGTGCATTTGAATTGGTGAAGACCATTGTGAGACCACTGCTAAGGCTGTTGAGGATTGCCTCTGATGTGGGTGAATTGAGTTTGGATTTGGGTCTGATCAAAGAGTCAGTGTTAAGTAATGGATTTACCTCCAATCTCCAAAAAGTTTCTTTCCAACATGGAGGTGGTTGGCATGGAAAGAGGTGGCTTGGGAAGGGAAAAGAACAAATGTTGATTCCAGTGGCAAATGCCGCTGTTGTGCTGAGCAATTGGTCTCTGTCGATATTAGTTGTGCTGAGACGGAGAGCTTTGCTCAGTCTTTGGCTGCACTTGCCCTTGAAAGTTGAAAGGGAGACTCAACCGAATTTTAGAAGCTTTCAGGAATGGTTAGAAGTACATAATCAGTTTGATGCTATTATCGATGGAGCAAATGTTGGCCTCTACCAACAGAATTTGTCTGATTCTGTTGGATTTAATCTTCCTCAGGTATTGGCTTTATGCTGCTGTATAAAATTGAAGTGCTTGCTTGTGACAAATGACGAATTGCGAGATCATATTTTTGAACTTTTGAGAAACGACTTGTTTCACAGGTGGAAGGAGAAACATCAAGTATGTGTTATCGAGATAAACCTTGCTCTGCAGATAATTAATTACTTATCGGAATTTGTATGTTCTCATGCAATTGTTGTATCATGTTTTGCAGACTTGAGATGCCACCTCTTTACTCTATTGAATCAGACACAGGATCCTGGCATATTCCAATCGCAGGCAATGACACTGAACGAGAACAAACTTGGTTGTGTTACCAGGCCAGGTGTTTCTGAAACTTCTGAAACTTCTGATAACCATCCATCAATGGCGGCCAGGTCCTTTACAGAACAACCAGCAATGGCCTTCTGTAAGTTTTCTGGATTCTGCACAGATAGGTGGTATTCAGCAGATAGCAAGATTACAGTGGGTCGGTTTCTTGAATCAGTTGTGAGGCGTGGCGGGCTTGCGGTTGAGCAGAGGGCAGATTCCGGCGTGAGCGAGGTGGTGAAGGCGGTCGGAGAACAGGGGTTGTGGGTTCTTCAATGCGTTTTCTTGGTGGATTCATGTGACTTTGGTTTCGGTTGTTTTGGATTGTGCTTGGGTAAAGGGATATTTACGAGGATGGATGACTTGGTGAAGAAGTGGAAGTCGTGGTCGCTTACTGGGGAGGAGGCGGAGGTGGTACGCCCAAGTGTAATACTATCTTCTCTGTCGACGGCAGATTTGGACTTATGTGTGGTGGGTAAGGTCCTGTCGTCCAAGCGGGTCAATCCAGAGGCCTTTCGCAATGTGTTGCGAGCGGCGTGGAGAGTTCACAATGCGACACGTGTGGAGCCGGCTGGAGAGAAAGTCTATGTGATTCAGTTTCGTACCAGGGGTGAAAAGTCGAGAGTTATGGATACTGGTCCTTGGGCCTTTGACCGGTCCCTTGTTGTGCTTAAGGAGCCAAGGGATGTTGCGTCGGTGCTAGAAACAGAGTTTTGA

Coding sequence (CDS)

GAAATTGCATTTCAATCAGCAGCACTTCAATACTCTCCTCTACCTCTGTTCTACCGCGATTTCAGACCCGTCTTTGAAAGAATCTGCGTCACTGCTGTCGCCAGACTTGCCGCGGTGAAAGGGGATGGCGATTGTGCATTTGAATTGGTGAAGACCATTGTGAGACCACTGCTAAGGCTGTTGAGGATTGCCTCTGATGTGGGTGAATTGAGTTTGGATTTGGGTCTGATCAAAGAGTCAGTGTTAAGTAATGGATTTACCTCCAATCTCCAAAAAGTTTCTTTCCAACATGGAGGTGGTTGGCATGGAAAGAGGTGGCTTGGGAAGGGAAAAGAACAAATGTTGATTCCAGTGGCAAATGCCGCTGTTGTGCTGAGCAATTGGTCTCTGTCGATATTAGTTGTGCTGAGACGGAGAGCTTTGCTCAGTCTTTGGCTGCACTTGCCCTTGAAAGTTGAAAGGGAGACTCAACCGAATTTTAGAAGCTTTCAGGAATGGTTAGAAGTACATAATCAGTTTGATGCTATTATCGATGGAGCAAATGTTGGCCTCTACCAACAGAATTTGTCTGATTCTGTTGGATTTAATCTTCCTCAGGTATTGGCTTTATGCTGCTGTATAAAATTGAAGTGCTTGCTTGTGACAAATGACGAATTGCGAGATCATATTTTTGAACTTTTGAGAAACGACTTGTTTCACAGGTGGAAGGAGAAACATCAAGTATGTGTTATCGAGATAAACCTTGCTCTGCAGATAATTAATTACTTATCGGAATTTGTATGTTCTCATGCAATTGTTGTATCATGTTTTGCAGACTTGAGATGCCACCTCTTTACTCTATTGAATCAGACACAGGATCCTGGCATATTCCAATCGCAGGCAATGACACTGAACGAGAACAAACTTGGTTGTGTTACCAGGCCAGGTGTTTCTGAAACTTCTGAAACTTCTGATAACCATCCATCAATGGCGGCCAGGTCCTTTACAGAACAACCAGCAATGGCCTTCTGTAAGTTTTCTGGATTCTGCACAGATAGGTGGTATTCAGCAGATAGCAAGATTACAGTGGGTCGGTTTCTTGAATCAGTTGTGAGGCGTGGCGGGCTTGCGGTTGAGCAGAGGGCAGATTCCGGCGTGAGCGAGGTGGTGAAGGCGGTCGGAGAACAGGGGTTGTGGGTTCTTCAATGCGTTTTCTTGGTGGATTCATGTGACTTTGGTTTCGGTTGTTTTGGATTGTGCTTGGGTAAAGGGATATTTACGAGGATGGATGACTTGGTGAAGAAGTGGAAGTCGTGGTCGCTTACTGGGGAGGAGGCGGAGGTGGTACGCCCAAGTGTAATACTATCTTCTCTGTCGACGGCAGATTTGGACTTATGTGTGGTGGGTAAGGTCCTGTCGTCCAAGCGGGTCAATCCAGAGGCCTTTCGCAATGTGTTGCGAGCGGCGTGGAGAGTTCACAATGCGACACGTGTGGAGCCGGCTGGAGAGAAAGTCTATGTGATTCAGTTTCGTACCAGGGGTGAAAAGTCGAGAGTTATGGATACTGGTCCTTGGGCCTTTGACCGGTCCCTTGTTGTGCTTAAGGAGCCAAGGGATGTTGCGTCGGTGCTAGAAACAGAGTTTTGA

Protein sequence

EIAFQSAALQYSPLPLFYRDFRPVFERICVTAVARLAAVKGDGDCAFELVKTIVRPLLRLLRIASDVGELSLDLGLIKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGKEQMLIPVANAAVVLSNWSLSILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAIIDGANVGLYQQNLSDSVGFNLPQVLALCCCIKLKCLLVTNDELRDHIFELLRNDLFHRWKEKHQVCVIEINLALQIINYLSEFVCSHAIVVSCFADLRCHLFTLLNQTQDPGIFQSQAMTLNENKLGCVTRPGVSETSETSDNHPSMAARSFTEQPAMAFCKFSGFCTDRWYSADSKITVGRFLESVVRRGGLAVEQRADSGVSEVVKAVGEQGLWVLQCVFLVDSCDFGFGCFGLCLGKGIFTRMDDLVKKWKSWSLTGEEAEVVRPSVILSSLSTADLDLCVVGKVLSSKRVNPEAFRNVLRAAWRVHNATRVEPAGEKVYVIQFRTRGEKSRVMDTGPWAFDRSLVVLKEPRDVASVLETEF

Homology

[Close]

BLAST of Spg000166 vs. NCBI nr
Match: XP_023546971.1 (proteinaceous RNase P 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.5 bits (428), Expect = 8.1e-38
Identity = 148/440 (33.64%), Postives = 181/440 (41.14%), Query Frame = 0


Query: 30  VTAVARLAAVKGDGDCAFELVKTI----VRPLLRL------------------------- 89
           +TAVARLAA KGDGDCAFELVK I    V P LR                          
Sbjct: 100 ITAVARLAAAKGDGDCAFELVKNIDKYKVTPRLRTYDPALLYFCENLEVEKAYEVEQHMD 159

Query: 90  ---------------------------------LRI---------------------ASD 149
                                            LR+                     ASD
Sbjct: 160 SAEVVLEEPQISALLKASSERGKGDRVYEYLHKLRLSVKCVSESTAKAIEDWFCSENASD 219

Query: 150 VGELSLDLGLIKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGK---EQMLIPVANAAV 209
           VGELSLD+GLI+E+VL N             GGGWHGK W+GKG    ++  +  +    
Sbjct: 220 VGELSLDVGLIREAVLGN-------------GGGWHGKGWIGKGNWTVKRTNVDSSGKCC 279

Query: 210 VLSNWSLSILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAIIDGANVG 269
             +    S+ +        +  L   L +ERETQ NFRSFQEWLE+HN  DAIIDGAN+G
Sbjct: 280 CCAEQLASVDISCAETESFAQSL-AALAIERETQTNFRSFQEWLELHNDCDAIIDGANIG 339

Query: 270 LYQQNLSDSVGFNLPQVLA----------------------------------------- 320
           LYQQN +DS GFNLPQV A                                         
Sbjct: 340 LYQQNFADS-GFNLPQVEAVVNELCKMSGGKWPLIFWHNKRTRALLDNSSQRRLVEEWIN 399

[Close]

BLAST of Spg000166 vs. NCBI nr
Match: KAG6600755.1 (Proteinaceous RNase P 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.4 bits (420), Expect = 6.9e-37
Identity = 131/376 (34.84%), Postives = 173/376 (46.01%), Query Frame = 0


Query: 24  VFERICVTAVARLAAVKGDGDCAFEL-------VKTIVRPLLRLL------RIASDVGEL 83
           V E   ++A+ + ++ +G GD  +E        VK +     + +        ASDVGEL
Sbjct: 164 VLEEPQISALLKASSERGKGDRVYEYLHKLRRSVKCVSESTAKAIEDWFCSENASDVGEL 223

Query: 84  SLDLGLIKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGK---EQMLIPVANAAVVLSN 143
           SLD+GLI+E+VLSN             GGGWHGK W+GKG    ++  +  +      + 
Sbjct: 224 SLDVGLIREAVLSN-------------GGGWHGKGWIGKGNWRVKRTNVDSSGKCCCCAE 283

Query: 144 WSLSILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAIIDGANVGLYQQ 203
              S+ +        +  L   L +ERETQ NFRSFQEWLE+HN  DAIIDGAN+GLYQQ
Sbjct: 284 QLASVDISCAETESFAQSL-AALAIERETQTNFRSFQEWLELHNDCDAIIDGANIGLYQQ 343

Query: 204 NLSDSVGFNLPQVLA--------------------------------------------- 263
           N +DS GFNLPQV A                                             
Sbjct: 344 NFADS-GFNLPQVEAVVNELCKMSGGKWPLIFWHNKRTRVLLDNSSQRRLVEEWINNDVL 403

Query: 264 -------------LCCCIKLKCLLVTNDELRDHIFELLRNDLFHRWKEKHQVCVIEINLA 320
                        L   +KLKCLLVTNDE+RDHIFELL+NDLF RWKEKHQ+    +   
Sbjct: 404 YTTPVGSNDDWYWLYAAVKLKCLLVTNDEMRDHIFELLKNDLFLRWKEKHQIRYTFVKGQ 463

[Close]

BLAST of Spg000166 vs. NCBI nr
Match: XP_022991275.1 (proteinaceous RNase P 2-like [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 1.2e-36
Identity = 129/376 (34.31%), Postives = 173/376 (46.01%), Query Frame = 0


Query: 24  VFERICVTAVARLAAVKGDGDCAFEL-------VKTIVRPLLRLL------RIASDVGEL 83
           V E   ++A+ + ++ +G GD  +E        VK +     + +        ASDVGEL
Sbjct: 164 VLEEPQISALLKASSERGKGDRVYEYLHKLRRSVKCVSESTAKAIEDWFCSENASDVGEL 223

Query: 84  SLDLGLIKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGK---EQMLIPVANAAVVLSN 143
           SLD+GLI+E+VLSN             GGGWHGK W+GKG    ++  +  +      + 
Sbjct: 224 SLDVGLIREAVLSN-------------GGGWHGKGWIGKGNWRVKRTNVDSSGKCCCCAE 283

Query: 144 WSLSILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAIIDGANVGLYQQ 203
              S+ +        +  L   L +ERETQ NFRSFQEWLE+HN  DAIIDGAN+GLYQQ
Sbjct: 284 QLASVDISCAETESFAQSL-AALAIERETQTNFRSFQEWLELHNDCDAIIDGANIGLYQQ 343

Query: 204 NLSDSVGFNLPQVLA--------------------------------------------- 263
           N +DS GFNLPQ+ A                                             
Sbjct: 344 NFADS-GFNLPQIEAVVNELCKMSGGKWPLIFWHNKRTRALLDNSSQRRLVEEWINNDVL 403

Query: 264 -------------LCCCIKLKCLLVTNDELRDHIFELLRNDLFHRWKEKHQVCVIEINLA 320
                        L   +KLKCLLVTNDE+RDHIFELL+NDLF RWKEKHQ+    +   
Sbjct: 404 YTTPVGSNDDWYWLYAAVKLKCLLVTNDEMRDHIFELLKNDLFLRWKEKHQIRYTFVKGQ 463

[Close]

BLAST of Spg000166 vs. NCBI nr
Match: XP_022942033.1 (proteinaceous RNase P 2-like [Cucurbita moschata])

HSP 1 Score: 165.6 bits (418), Expect = 1.2e-36
Identity = 112/292 (38.36%), Postives = 144/292 (49.32%), Query Frame = 0


Query: 24  VFERICVTAVARLAAVKGDGDCAFEL-------VKTIVRPLLRLL------RIASDVGEL 83
           V E   ++A+ + ++ +G GD  +E        VK +     + +        ASD+GEL
Sbjct: 164 VLEEPQISALLKASSERGKGDRVYEYLHKLRRSVKCVSESTAKAIEDWFCSENASDIGEL 223

Query: 84  SLDLGLIKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGK---EQMLIPVANAAVVLSN 143
           SLD+GLI+E+VLSN             GGGWHGK W+GKG    ++  +  +      + 
Sbjct: 224 SLDVGLIREAVLSN-------------GGGWHGKGWIGKGNWRVKRTNVDSSGKCCCCAE 283

Query: 144 WSLSILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAIIDGANVGLYQQ 203
              S+ +        +  L   L +ERETQ NFRSFQEWLE+HN  DAIIDGAN+GLYQQ
Sbjct: 284 QLASVDISCAEAESFAQSL-AALAIERETQTNFRSFQEWLELHNDCDAIIDGANIGLYQQ 343

Query: 204 NLSDSVGFNLPQVLA--------------------------------------------- 242
           N +DS GFNLPQV A                                             
Sbjct: 344 NFADS-GFNLPQVEAVVNELCKMSGGKWPLIFWHNKRTRALLDNSSQRRLVEEWINNDVL 403

[Close]

BLAST of Spg000166 vs. NCBI nr
Match: XP_004151049.3 (proteinaceous RNase P 2 [Cucumis sativus] >KGN55181.2 hypothetical protein Csa_012924 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 1.7e-35
Identity = 144/448 (32.14%), Postives = 177/448 (39.51%), Query Frame = 0


Query: 30  VTAVARLAAVKGDGDCAFELVKTI----VRPLLR-------------------------- 89
           VTAVARLAA K DGD AFELVKTI    V P LR                          
Sbjct: 100 VTAVARLAAAKRDGDSAFELVKTIGKYKVTPRLRTYDPALICFCENLEVDKAYEVEQHMN 159

Query: 90  -------------LLRI----------------------------------------ASD 149
                        LL++                                        ASD
Sbjct: 160 SAGVELEEPQISALLKLSSDTGKEDKVYEYLHKLRRFVKCVSESTAKIIEGWFCSEKASD 219

Query: 150 VGELSLDLGLIKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGK--------------- 209
           +GE ++D+GLI+E++LSN             GGGWHGK W+GKG                
Sbjct: 220 IGESTMDIGLIREAILSN-------------GGGWHGKGWIGKGNWVVKRTNVYSSGKCC 279

Query: 210 --EQMLIPVANAAVVLSNWSLSILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEV 269
              Q L+ V  +     N++ S+                 L +ERE QPNF SFQEWLEV
Sbjct: 280 CCAQQLVGVDISCAETENFAQSLAA---------------LAIEREAQPNFISFQEWLEV 339

Query: 270 HNQFDAIIDGANVGLYQQNLSDSVGFNLPQVLA--------------------------- 320
           HN  DAI+DGANVGLYQQN +DS GFNL QV A                           
Sbjct: 340 HNHCDAIVDGANVGLYQQNFADS-GFNLSQVEAVVKELCKMSGGKWPLVLWHNKRTRASL 399

[Close]

BLAST of Spg000166 vs. ExPASy Swiss-Prot
Match: F4JKB6 (Proteinaceous RNase P 3 OS=Arabidopsis thaliana OX=3702 GN=PRORP3 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-24
Identity = 106/363 (29.20%), Postives = 143/363 (39.39%), Query Frame = 0


Query: 30  VTAVARLAAVKGDGDCAFELVKTIVR------PLLR------------------------ 89
           VTAVARLAA KGDGD AF+LVK +V       P LR                        
Sbjct: 171 VTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRTYAPALLCFCDTLEAEKGYEVEDH 230

Query: 90  ---------------LLRIASDVG----------ELSLDLGLIKE--------------- 149
                          LL++++  G          +L   +G + E               
Sbjct: 231 MDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLRECVGCVSEETSKAIEEWFYGVKA 290

Query: 150 -SVLSNGFTSN---LQKVSFQHGGGWHGKRWLGKGK-----------------EQMLIPV 209
             V  NG  S+   L+    ++GGGWHG  W+G+GK                 ++ L  V
Sbjct: 291 SEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKWIVKKGNVSSAGKCLSCDEHLACV 350

Query: 210 ANAAVVLSNWSLSIL-VVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAII 242
               V   ++  S++ + + R+A ++           E   +F  FQEWLE H  ++AI+
Sbjct: 351 DTNEVETEDFVNSLVTLAMERKAKMN---------SCEPMADFSEFQEWLEKHGDYEAIL 410

[Close]

BLAST of Spg000166 vs. ExPASy Swiss-Prot
Match: Q680B9 (Proteinaceous RNase P 2 OS=Arabidopsis thaliana OX=3702 GN=PRORP2 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.6e-20
Identity = 78/261 (29.89%), Postives = 117/261 (44.83%), Query Frame = 0


Query: 64  ASDVGE--LSLDLGLIKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGKEQMLIPVANA 123
           A +VG+  +  D+G+++E+VL+N             GGGWHG  W+G+GK  +     ++
Sbjct: 231 AGEVGDNGIGSDVGMLREAVLNN-------------GGGWHGHGWVGEGKWTVKKGNVSS 290

Query: 124 AVVLSNWSLSILVVLRRRALLSLWLH--LPLKVERETQPN-------FRSFQEWLEVHNQ 183
                + S  +  V         ++   + L ++R+T+ N       F  FQ+WLE H  
Sbjct: 291 TGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEFQDWLEKHGD 350

Query: 184 FDAIIDGANVGLYQQNLSDSVGFNLPQVLA------------------------------ 243
           ++AI+DGAN+GLYQQN  D   F+L Q+ +                              
Sbjct: 351 YEAIVDGANIGLYQQNFVDG-SFSLSQLESVMKELYRESGNNKWPLILLHKRRVKTLLEN 410

Query: 244 -----------------------------LCCCIKLKCLLVTNDELRDHIFELLRNDLFH 253
                                        L    KLKCLLVTNDE+RDHIFELL +  F 
Sbjct: 411 PTHRNLVEEWISNGVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIFELLGSTFFQ 470

[Close]

BLAST of Spg000166 vs. ExPASy Swiss-Prot
Match: Q66GI4 (Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.3e-18
Identity = 78/243 (32.10%), Postives = 100/243 (41.15%), Query Frame = 0


Query: 63  IASDVGELSLDLGLIKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGK---------EQ 122
           +A+  G    D+  I+++V+S              GGGWHG+ WLG GK         E 
Sbjct: 295 VATKTGVKKWDVKKIRDAVVSG-------------GGGWHGQGWLGTGKWNVKRTEMDEN 354

Query: 123 MLIPVANAAVVLSNWSLSILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQF 182
            +       +V     + I  V       SL     L  ERE + NF  FQEWLE H  F
Sbjct: 355 GVCKCCKEKLV----CIDINPVETETFAASL---TRLACEREVKANFNQFQEWLERHGPF 414

Query: 183 DAIIDGANVGLYQQ------NLSDSV--------GFNLPQVLA----------------- 242
           DA+IDGAN+GL  Q       L+++V           LP V+                  
Sbjct: 415 DAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRA 474

[Close]

BLAST of Spg000166 vs. ExPASy TrEMBL
Match: A0A6J1JSF3 (Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111487974 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.7e-37
Identity = 129/376 (34.31%), Postives = 173/376 (46.01%), Query Frame = 0


Query: 24  VFERICVTAVARLAAVKGDGDCAFEL-------VKTIVRPLLRLL------RIASDVGEL 83
           V E   ++A+ + ++ +G GD  +E        VK +     + +        ASDVGEL
Sbjct: 164 VLEEPQISALLKASSERGKGDRVYEYLHKLRRSVKCVSESTAKAIEDWFCSENASDVGEL 223

Query: 84  SLDLGLIKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGK---EQMLIPVANAAVVLSN 143
           SLD+GLI+E+VLSN             GGGWHGK W+GKG    ++  +  +      + 
Sbjct: 224 SLDVGLIREAVLSN-------------GGGWHGKGWIGKGNWRVKRTNVDSSGKCCCCAE 283

Query: 144 WSLSILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAIIDGANVGLYQQ 203
              S+ +        +  L   L +ERETQ NFRSFQEWLE+HN  DAIIDGAN+GLYQQ
Sbjct: 284 QLASVDISCAETESFAQSL-AALAIERETQTNFRSFQEWLELHNDCDAIIDGANIGLYQQ 343

Query: 204 NLSDSVGFNLPQVLA--------------------------------------------- 263
           N +DS GFNLPQ+ A                                             
Sbjct: 344 NFADS-GFNLPQIEAVVNELCKMSGGKWPLIFWHNKRTRALLDNSSQRRLVEEWINNDVL 403

Query: 264 -------------LCCCIKLKCLLVTNDELRDHIFELLRNDLFHRWKEKHQVCVIEINLA 320
                        L   +KLKCLLVTNDE+RDHIFELL+NDLF RWKEKHQ+    +   
Sbjct: 404 YTTPVGSNDDWYWLYAAVKLKCLLVTNDEMRDHIFELLKNDLFLRWKEKHQIRYTFVKGQ 463

[Close]

BLAST of Spg000166 vs. ExPASy TrEMBL
Match: A0A6J1FTQ8 (Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111447222 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.7e-37
Identity = 112/292 (38.36%), Postives = 144/292 (49.32%), Query Frame = 0


Query: 24  VFERICVTAVARLAAVKGDGDCAFEL-------VKTIVRPLLRLL------RIASDVGEL 83
           V E   ++A+ + ++ +G GD  +E        VK +     + +        ASD+GEL
Sbjct: 164 VLEEPQISALLKASSERGKGDRVYEYLHKLRRSVKCVSESTAKAIEDWFCSENASDIGEL 223

Query: 84  SLDLGLIKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGK---EQMLIPVANAAVVLSN 143
           SLD+GLI+E+VLSN             GGGWHGK W+GKG    ++  +  +      + 
Sbjct: 224 SLDVGLIREAVLSN-------------GGGWHGKGWIGKGNWRVKRTNVDSSGKCCCCAE 283

Query: 144 WSLSILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAIIDGANVGLYQQ 203
              S+ +        +  L   L +ERETQ NFRSFQEWLE+HN  DAIIDGAN+GLYQQ
Sbjct: 284 QLASVDISCAEAESFAQSL-AALAIERETQTNFRSFQEWLELHNDCDAIIDGANIGLYQQ 343

Query: 204 NLSDSVGFNLPQVLA--------------------------------------------- 242
           N +DS GFNLPQV A                                             
Sbjct: 344 NFADS-GFNLPQVEAVVNELCKMSGGKWPLIFWHNKRTRALLDNSSQRRLVEEWINNDVL 403

[Close]

BLAST of Spg000166 vs. ExPASy TrEMBL
Match: A0A5A7TE70 (Ribonuclease P OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00560 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.4e-35
Identity = 124/378 (32.80%), Postives = 167/378 (44.18%), Query Frame = 0


Query: 30  VTAVARLAAVKGDGDCAFE-------LVKTIVRPLLRLL------RIASDVGELSLDLGL 89
           ++ + ++++  G GD  +E        VK +     +++        ASD+GE +LD+GL
Sbjct: 170 ISVLLKVSSDTGKGDKVYEYLHKLRRFVKCVSESTAKIIEDWFCSEKASDIGESTLDVGL 229

Query: 90  IKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGK-----------------EQMLIPVA 149
           I+E++LSN             GGGWHGK W+GKG                   Q L+ V 
Sbjct: 230 IREAILSN-------------GGGWHGKGWIGKGNWVVKRTNVYSNGKCCCCAQQLVCVD 289

Query: 150 NAAVVLSNWSLSILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAIIDG 209
            +     N++ S+                 L +ERE QPNF SFQEWLEVHN  DAI+DG
Sbjct: 290 ISCAETDNFAQSLAA---------------LAIEREAQPNFISFQEWLEVHNHCDAIVDG 349

Query: 210 ANVGLYQQNLSDSVGFNLPQVLA------------------------------------- 269
           ANVGLYQQN +DS GFNLPQV A                                     
Sbjct: 350 ANVGLYQQNFADS-GFNLPQVEAVVKELCKMSRGKWPLVFWHNKRTRASLDNSSHRKVVE 409

Query: 270 ---------------------LCCCIKLKCLLVTNDELRDHIFELLRNDLFHRWKEKHQV 320
                                L   +KLKCLL+TNDE+RDHIFELL NDLF RWKEKHQ+
Sbjct: 410 EWIDKGVLYSTPNGSNDDWYWLYAAVKLKCLLITNDEMRDHIFELLGNDLFLRWKEKHQI 469

[Close]

BLAST of Spg000166 vs. ExPASy TrEMBL
Match: A0A1S3B5V6 (Ribonuclease P OS=Cucumis melo OX=3656 GN=LOC103486110 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.4e-35
Identity = 124/378 (32.80%), Postives = 167/378 (44.18%), Query Frame = 0


Query: 30  VTAVARLAAVKGDGDCAFE-------LVKTIVRPLLRLL------RIASDVGELSLDLGL 89
           ++ + ++++  G GD  +E        VK +     +++        ASD+GE +LD+GL
Sbjct: 170 ISVLLKVSSDTGKGDKVYEYLHKLRRFVKCVSESTAKIIEDWFCSEKASDIGESTLDVGL 229

Query: 90  IKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGK-----------------EQMLIPVA 149
           I+E++LSN             GGGWHGK W+GKG                   Q L+ V 
Sbjct: 230 IREAILSN-------------GGGWHGKGWIGKGNWVVKRTNVYSNGKCCCCAQQLVCVD 289

Query: 150 NAAVVLSNWSLSILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAIIDG 209
            +     N++ S+                 L +ERE QPNF SFQEWLEVHN  DAI+DG
Sbjct: 290 ISCAETDNFAQSLAA---------------LAIEREAQPNFISFQEWLEVHNHCDAIVDG 349

Query: 210 ANVGLYQQNLSDSVGFNLPQVLA------------------------------------- 269
           ANVGLYQQN +DS GFNLPQV A                                     
Sbjct: 350 ANVGLYQQNFADS-GFNLPQVEAVVKELCKMSRGKWPLVFWHNKRTRASLDNSSHRKVVE 409

Query: 270 ---------------------LCCCIKLKCLLVTNDELRDHIFELLRNDLFHRWKEKHQV 320
                                L   +KLKCLL+TNDE+RDHIFELL NDLF RWKEKHQ+
Sbjct: 410 EWIDKGVLYSTPNGSNDDWYWLYAAVKLKCLLITNDEMRDHIFELLGNDLFLRWKEKHQI 469

[Close]

BLAST of Spg000166 vs. ExPASy TrEMBL
Match: A0A6J1CSF1 (Ribonuclease P OS=Momordica charantia OX=3673 GN=LOC111013873 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.1e-31
Identity = 119/377 (31.56%), Postives = 164/377 (43.50%), Query Frame = 0


Query: 24  VFERICVTAVARLAAVKGDGDCAFEL-------VKTIVRPLLRLL------RIASDVGEL 83
           V E   ++A+ ++++  G GD  +E        VK +     + +        ASDVGEL
Sbjct: 164 VLEEPQLSALLKVSSETGRGDRVYEYLHKLRRSVKCVAESTAKAIEDWFCSEKASDVGEL 223

Query: 84  SLDLGLIKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGK---EQMLIPVANAAVVLSN 143
           S DLGLI+E++ SN             GGGWH K W+GKG     +  +  +      + 
Sbjct: 224 SWDLGLIREAISSN-------------GGGWHEKGWIGKGNWAVRRTNVDSSGKCCSCAE 283

Query: 144 WSLSILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAIIDGANVGLYQQ 203
              S+ +        +  L     +ERETQPNFRSFQEWLE HN   A++DGAN+GLYQQ
Sbjct: 284 QLFSVDIGCDETEKFAQSL-ADFAIERETQPNFRSFQEWLETHNHCGAVVDGANIGLYQQ 343

Query: 204 NLSDSVGFNLPQVLA--------------------------------------------- 263
           N +DS GFNLPQV A                                             
Sbjct: 344 NFADSAGFNLPQVDAVVKELYKMSGGKWPLVFWHHKRTRTLLDNSSLRRHVEEWMNKGVL 403

Query: 264 -------------LCCCIKLKCLLVTNDELRDHIFELLRNDLFHRWKEKHQVCVIEINLA 323
                        L   +KLK LLVTNDE+RDHIFELL ++ F +WKEKHQ+    +   
Sbjct: 404 YTTPIGSNDDWYWLYAAVKLKRLLVTNDEMRDHIFELLGSNSFLKWKEKHQIRYTFVKGQ 463

Query: 324 LQIINYLSEFVCSHAIVVSCFADLRCHLFTLLNQTQDPGIFQSQAMTLNENKLGCVTRPG 327
           L++     E    ++ V+        H+    N ++            +E    C+TRPG
Sbjct: 464 LRL-----EMPPVYSSVIQESETGSWHVPIAGNDSE------------SERTWLCITRPG 509

[Close]

BLAST of Spg000166 vs. TAIR 10
Match: AT4G21900.1 (proteinaceous RNase P 3 )

HSP 1 Score: 115.9 bits (289), Expect = 9.9e-26
Identity = 106/363 (29.20%), Postives = 143/363 (39.39%), Query Frame = 0


Query: 30  VTAVARLAAVKGDGDCAFELVKTIVR------PLLR------------------------ 89
           VTAVARLAA KGDGD AF+LVK +V       P LR                        
Sbjct: 171 VTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRTYAPALLCFCDTLEAEKGYEVEDH 230

Query: 90  ---------------LLRIASDVG----------ELSLDLGLIKE--------------- 149
                          LL++++  G          +L   +G + E               
Sbjct: 231 MDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLRECVGCVSEETSKAIEEWFYGVKA 290

Query: 150 -SVLSNGFTSN---LQKVSFQHGGGWHGKRWLGKGK-----------------EQMLIPV 209
             V  NG  S+   L+    ++GGGWHG  W+G+GK                 ++ L  V
Sbjct: 291 SEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKWIVKKGNVSSAGKCLSCDEHLACV 350

Query: 210 ANAAVVLSNWSLSIL-VVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAII 242
               V   ++  S++ + + R+A ++           E   +F  FQEWLE H  ++AI+
Sbjct: 351 DTNEVETEDFVNSLVTLAMERKAKMN---------SCEPMADFSEFQEWLEKHGDYEAIL 410

[Close]

BLAST of Spg000166 vs. TAIR 10
Match: AT2G16650.1 (proteinaceous RNase P 2 )

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-21
Identity = 78/261 (29.89%), Postives = 117/261 (44.83%), Query Frame = 0


Query: 64  ASDVGE--LSLDLGLIKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGKEQMLIPVANA 123
           A +VG+  +  D+G+++E+VL+N             GGGWHG  W+G+GK  +     ++
Sbjct: 231 AGEVGDNGIGSDVGMLREAVLNN-------------GGGWHGHGWVGEGKWTVKKGNVSS 290

Query: 124 AVVLSNWSLSILVVLRRRALLSLWLH--LPLKVERETQPN-------FRSFQEWLEVHNQ 183
                + S  +  V         ++   + L ++R+T+ N       F  FQ+WLE H  
Sbjct: 291 TGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEFQDWLEKHGD 350

Query: 184 FDAIIDGANVGLYQQNLSDSVGFNLPQVLA------------------------------ 243
           ++AI+DGAN+GLYQQN  D   F+L Q+ +                              
Sbjct: 351 YEAIVDGANIGLYQQNFVDG-SFSLSQLESVMKELYRESGNNKWPLILLHKRRVKTLLEN 410

Query: 244 -----------------------------LCCCIKLKCLLVTNDELRDHIFELLRNDLFH 253
                                        L    KLKCLLVTNDE+RDHIFELL +  F 
Sbjct: 411 PTHRNLVEEWISNGVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIFELLGSTFFQ 470

[Close]

BLAST of Spg000166 vs. TAIR 10
Match: AT2G32230.1 (proteinaceous RNase P 1 )

HSP 1 Score: 94.4 bits (233), Expect = 3.1e-19
Identity = 78/243 (32.10%), Postives = 100/243 (41.15%), Query Frame = 0


Query: 63  IASDVGELSLDLGLIKESVLSNGFTSNLQKVSFQHGGGWHGKRWLGKGK---------EQ 122
           +A+  G    D+  I+++V+S              GGGWHG+ WLG GK         E 
Sbjct: 295 VATKTGVKKWDVKKIRDAVVSG-------------GGGWHGQGWLGTGKWNVKRTEMDEN 354

Query: 123 MLIPVANAAVVLSNWSLSILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQF 182
            +       +V     + I  V       SL     L  ERE + NF  FQEWLE H  F
Sbjct: 355 GVCKCCKEKLV----CIDINPVETETFAASL---TRLACEREVKANFNQFQEWLERHGPF 414

Query: 183 DAIIDGANVGLYQQ------NLSDSV--------GFNLPQVLA----------------- 242
           DA+IDGAN+GL  Q       L+++V           LP V+                  
Sbjct: 415 DAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRA 474

[Close]

BLAST of Spg000166 vs. TAIR 10
Match: AT5G60430.1 (drug transmembrane transporters;antiporters )

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-14
Identity = 51/160 (31.87%), Postives = 73/160 (45.62%), Query Frame = 0


Query: 90  LQKVSFQHGGGWHGKRWLGKGK------------------EQMLIPVANAAVVLSNWSLS 149
           L++   ++GGGWHG  W+G GK                  EQ+     N           
Sbjct: 2   LREAVLKNGGGWHGHGWVGDGKWIVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSL 61

Query: 150 ILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAIIDGANVGLYQQNLSD 209
           + + + R+A ++           E+   F  FQ+WLE H  ++AI+DGAN+GLYQQN  D
Sbjct: 62  VALAMERKAKMN---------SCESDVVFSEFQDWLEKHGDYEAIVDGANIGLYQQNFVD 121

Query: 210 SVGFNLPQVLALCCCIKLKCLLVTNDELRDHIFELLRNDL 232
              F+L QVL    CIK     ++ + L  H F   RN L
Sbjct: 122 G-SFSLSQVLPSILCIK-----ISTNFLFFHFFFCFRNPL 146

[Close]

BLAST of Spg000166 vs. TAIR 10
Match: AT5G60430.2 (drug transmembrane transporters;antiporters )

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-14
Identity = 51/160 (31.87%), Postives = 73/160 (45.62%), Query Frame = 0


Query: 90  LQKVSFQHGGGWHGKRWLGKGK------------------EQMLIPVANAAVVLSNWSLS 149
           L++   ++GGGWHG  W+G GK                  EQ+     N           
Sbjct: 2   LREAVLKNGGGWHGHGWVGDGKWIVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSL 61

Query: 150 ILVVLRRRALLSLWLHLPLKVERETQPNFRSFQEWLEVHNQFDAIIDGANVGLYQQNLSD 209
           + + + R+A ++           E+   F  FQ+WLE H  ++AI+DGAN+GLYQQN  D
Sbjct: 62  VALAMERKAKMN---------SCESDVVFSEFQDWLEKHGDYEAIVDGANIGLYQQNFVD 121

Query: 210 SVGFNLPQVLALCCCIKLKCLLVTNDELRDHIFELLRNDL 232
              F+L QVL    CIK     ++ + L  H F   RN L
Sbjct: 122 G-SFSLSQVLPSILCIK-----ISTNFLFFHFFFCFRNPL 146

The following BLAST results are available for this feature:

BLAST of Spg000166 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546971.1	8.1e-38	33.64	proteinaceous RNase P 2 [Cucurbita pepo subsp. pepo]	[more]
KAG6600755.1	6.9e-37	34.84	Proteinaceous RNase P 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022991275.1	1.2e-36	34.31	proteinaceous RNase P 2-like [Cucurbita maxima]	[more]
XP_022942033.1	1.2e-36	38.36	proteinaceous RNase P 2-like [Cucurbita moschata]	[more]
XP_004151049.3	1.7e-35	32.14	proteinaceous RNase P 2 [Cucumis sativus] >KGN55181.2 hypothetical protein Csa_0...	[more]

BLAST of Spg000166 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JKB6	1.4e-24	29.20	Proteinaceous RNase P 3 OS=Arabidopsis thaliana OX=3702 GN=PRORP3 PE=1 SV=1	[more]
Q680B9	4.6e-20	29.89	Proteinaceous RNase P 2 OS=Arabidopsis thaliana OX=3702 GN=PRORP2 PE=1 SV=1	[more]
Q66GI4	4.3e-18	32.10	Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=...	[more]

BLAST of Spg000166 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JSF3	5.7e-37	34.31	Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111487974 PE=3 SV=1	[more]
A0A6J1FTQ8	5.7e-37	38.36	Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111447222 PE=3 SV=1	[more]
A0A5A7TE70	2.4e-35	32.80	Ribonuclease P OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00560 ...	[more]
A0A1S3B5V6	2.4e-35	32.80	Ribonuclease P OS=Cucumis melo OX=3656 GN=LOC103486110 PE=3 SV=1	[more]
A0A6J1CSF1	6.1e-31	31.56	Ribonuclease P OS=Momordica charantia OX=3673 GN=LOC111013873 PE=3 SV=1	[more]

BLAST of Spg000166 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21900.1	9.9e-26	29.20	proteinaceous RNase P 3	[more]
AT2G16650.1	3.3e-21	29.89	proteinaceous RNase P 2	[more]
AT2G32230.1	3.1e-19	32.10	proteinaceous RNase P 1	[more]
AT5G60430.1	5.1e-14	31.88	drug transmembrane transporters;antiporters	[more]
AT5G60430.2	5.1e-14	31.88	drug transmembrane transporters;antiporters	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 88..135 e-value: 9.9E-19 score: 69.0
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 453..528 e-value: 2.5E-8 score: 33.6
None	No IPR available	GENE3D	3.40.50.11980		coord: 136..200 e-value: 9.9E-19 score: 69.0 coord: 205..243 e-value: 1.3E-15 score: 58.7
None	No IPR available	PANTHER	PTHR13547:SF13	PROTEINACEOUS RNASE P 3	coord: 88..202 coord: 204..241
None	No IPR available	PANTHER	PTHR13547	UNCHARACTERIZED	coord: 88..202 coord: 204..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000166.1	Spg000166.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0005515	protein binding