Spg000157 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg000157
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationscaffold6: 21166397 .. 21169175 (+)
RNA-Seq ExpressionSpg000157
SyntenySpg000157
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGGATCCATCGCCGTCCAAACAAGGGTGGTCAGAGCCTGGAAGTCATAGACGTGAGAAACCTTTGTGAAAACAAGAAGTACTTGAATCAGTCACAAAAGCGAACTATAGTCGACCCAACGTTTGTGAAACGACATGTGAACAAGACACAGGAATCGTCGAAAAGCTCGACGAAGTCATGGTGGAAGGCCCCGGAAATGAAGAGACGACGACGTGTTGCGAAGTACAAATTGTATGCAGTTGAAGGGAAGGTAAAGAATTCCATAAAGAAAGGGATCAAGTGGTTCAAAACCAAGTGTCGCAGAATCATATCTGGGTTTTGAAAATTTTTACACTTATATAACAAAAATGGGCTTCAACTTTCATGGCTGATTTTCTTGTTCTTTGTATGGACATGTTTTAAAACGTGGGATGGTTGATTATGAAGATCAATATGCTTTGTCTTACGTTGTTAAGATGCATGGTTGTTTGTTTGGTTTGTTATTCTCTGTTTGGATATTGAAAATTAAATGATGAAAATTTATTGATCGTACATATATTTTTCATCTGAAAAAGATCGACTCACTGTTGTTGTTTTCTTTTCTCTTTCTTTCCTATTTTAACAATACCATTGGGTTTAATTAAAGTTGTCTCATTTTCATTACAACATTAGATAAATTATCGAAAAGTAATTGGGATTGATATCTATTTCGATTTCAAAATGGACACTTTTAGTCTGAATGGTCCACACCTCCTTTAACCATTAGTTGACCTATTGAAATATTGACATAGTGGTTAATTTGTTGAATAGGCATTGATCACGTGACAATTTTGTTGATTAGAGGCTAAAGTGGTCAACTCACTTTCCTACCTTCTCCGTGAAGGATTATCAAGTGCTTTCGGTGCAATGCTCTGAATAATTTTACACCGTTGGATGTAAGAAAGAGAAATTGTAAAAGTACCTCGATTTTGTATTCAATGGTTACTAGGGACAGACAAATTTGAAGATATAACATCCAACGTTGTAAAACTATATGTCCAGAGCACTACATCGGGAGCACCTGATAATTTTTCCTTCTCCGGTTCTCCCTTGTCCAGATGGTCCCTAGCCTCTCCTTCCTCTCTCTCCTTTCTCCCTTCTCTTCTCTCCTCCCTTCTTCTCCCTTAGCTATTGTTGTCAGCTAACGATCGTTCACCGCCACTGTCTTCATCGATTTGGAACGAATGCATTCGTTCCCCAAATCTGTAGAAGCATTCTCAAATCTTTGAATCGTTCGTTCTACTTCATTCTAGATTGGGGAACCCATGGATTCAAACAAACGTTGGTTCATTGATAGTAGTGAACAATAAGCATGAAAAACTGGTGATAGTGTGAGGAGGTCAATGAACAACGACATTGTTTTTTAAAAAATAAAAAATTGATCGAAACTGATAATATTACGGGTCAATAGGAGAAATGACTAATTTTAAATTGTCTAACTTGAAAAATGGCTAAACATAATAAATTTTGCAATTGTGGCTAAACGTGTTTTCTTTATACAATCTTCACAATTATTGTCTGCTAAAGCAAGCATAGCTCAGTGGTAATTGACATGTATCGTCGATCAAGAGGTCAGAGGTTCGAAGTATTTTCAAATTTGATGAATGATGGTAGTTTCAGAAAAATAAAACAGTAAAAATAGTGTCCTAGATAATTTTTAGTGGGTATTTTGAAAAACGGTTGACGAACTCTGAAACAGCCACCCAAAAACTGTAAAAGAAGAAACGAAACGGCAAAACTTAATTAATATTCAAGAAGAAGACACTTCATCCAAATTCGAGAGGATTCTTCTCAACAGCTTTTAGTTATTCAATATTCTTGGGTTGTTATGTAGTCAATTAGCATATGACACGTGTGTTCACTTATTTACTTTTTATTCTTCTTGAAACTCAAATCTCTAGGGTTTCTCCAATATATATTTTGTACTTGCCGCCCACTGTATTCAATGAGAAAACAGAGAATATTTCTTTTGTCCCTTTTATCTCTAAAAATTGTCTTGGTATCAGAGCTTATTTTCAATGGCTCATGCTACTTCTTCTTCAAGCCAAACTGTAACCTCATCTACAAACCCTGTGTTTAGTAGTCCACCGCTAAATCAACTTTTAAATAAAATCACCTCTATTAAGCTTGACAGAGGAAATTATTTGCTTTGGAAAAATATTGCTCTCCCCATTCTTAGAAGTTATCGCTTGGAGGGTCATCTGTCCGGTGAGAAGGCCTGTCCACCCAAGTTTCTGTCAACAACAACCGCTGCAGTCACAAATGCTATCGATTCAAGCTCCGAAGCAGTGGATTTCGAGGCTGTTGCTGGTGGCTCTAGCTCTTCGTCTACAATGATCTCTACTGTTAATCCCGAGTATGAAAGTTGGCTTGTTATAGATCAACTTCTTCTTGGTTGGTTGTACAATTCTATGACTCCTGAAATTGCAACTCAGGTAATGGGATATGAAAATTCAAAGGATCTTTGGGCTGCTATTCAAGAACTTTTTGGCGTTCAGTCTCGGGCAGAGGAAGATTACCTTCGATAGGTTTTTCAGCAAACTCGAAAGTGTTCTCTTAAAATGGTTGACTATTTGCGTGTCATGAAAACTCATGCAGATAACTTGGGGCAAGCTGGAAGTCCGGTTTCAAATCGATCATTGATTTCCCAAGTCTTGTTGGGGTTAGATGAGGAATACAATCCAGTTGTGGCTATGATCCAGGGACGAGTGAACATTTCATGGTCTGAAATGCAGGCAGAGTTGCTGGTTTTTTAG

mRNA sequence

ATGGAAGGGATCCATCGCCGTCCAAACAAGGGTGGTCAGAGCCTGGAAGTCATAGACGTGAGAAACCTTTGTGAAAACAAGAAGTACTTGAATCAGTCACAAAAGCGAACTATAGTCGACCCAACGTTTGTGAAACGACATGTGAACAAGACACAGGAATCGTCGAAAAGCTCGACGAAGTCATGGTGGAAGGCCCCGGAAATGAAGAGACGACGACGTGTTGCGAAGTACAAATTGTATGCAGTTGAAGGGAAGAGCACTACATCGGGAGCACCTGATAATTTTTCCTTCTCCGGTTCTCCCTTGTCCAGATGTTATCGCTTGGAGGGTCATCTGTCCGGTGAGAAGGCCTGTCCACCCAAGTTTCTGTCAACAACAACCGCTGCAGTCACAAATGCTATCGATTCAAGCTCCGAAGCAGTGGATTTCGAGGCTGTTTTTCAGCAAACTCGAAAGTGTTCTCTTAAAATGGTTGACTATTTGCGTGTCATGAAAACTCATGCAGATAACTTGGGGCAAGCTGGAAGTCCGGTTTCAAATCGATCATTGATTTCCCAAGTCTTGTTGGGGTTAGATGAGGAATACAATCCAGTTGTGGCTATGATCCAGGGACGAGTGAACATTTCATGGTCTGAAATGCAGGCAGAGTTGCTGGTTTTTTAG

Coding sequence (CDS)

ATGGAAGGGATCCATCGCCGTCCAAACAAGGGTGGTCAGAGCCTGGAAGTCATAGACGTGAGAAACCTTTGTGAAAACAAGAAGTACTTGAATCAGTCACAAAAGCGAACTATAGTCGACCCAACGTTTGTGAAACGACATGTGAACAAGACACAGGAATCGTCGAAAAGCTCGACGAAGTCATGGTGGAAGGCCCCGGAAATGAAGAGACGACGACGTGTTGCGAAGTACAAATTGTATGCAGTTGAAGGGAAGAGCACTACATCGGGAGCACCTGATAATTTTTCCTTCTCCGGTTCTCCCTTGTCCAGATGTTATCGCTTGGAGGGTCATCTGTCCGGTGAGAAGGCCTGTCCACCCAAGTTTCTGTCAACAACAACCGCTGCAGTCACAAATGCTATCGATTCAAGCTCCGAAGCAGTGGATTTCGAGGCTGTTTTTCAGCAAACTCGAAAGTGTTCTCTTAAAATGGTTGACTATTTGCGTGTCATGAAAACTCATGCAGATAACTTGGGGCAAGCTGGAAGTCCGGTTTCAAATCGATCATTGATTTCCCAAGTCTTGTTGGGGTTAGATGAGGAATACAATCCAGTTGTGGCTATGATCCAGGGACGAGTGAACATTTCATGGTCTGAAATGCAGGCAGAGTTGCTGGTTTTTTAG

Protein sequence

MEGIHRRPNKGGQSLEVIDVRNLCENKKYLNQSQKRTIVDPTFVKRHVNKTQESSKSSTKSWWKAPEMKRRRRVAKYKLYAVEGKSTTSGAPDNFSFSGSPLSRCYRLEGHLSGEKACPPKFLSTTTAAVTNAIDSSSEAVDFEAVFQQTRKCSLKMVDYLRVMKTHADNLGQAGSPVSNRSLISQVLLGLDEEYNPVVAMIQGRVNISWSEMQAELLVF
Homology
[Close]
BLAST of Spg000157 vs. NCBI nr
Match: KAA0033960.1 (DUF3511 domain protein [Cucumis melo var. makuwa] >TYK02584.1 DUF3511 domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 8.4e-26
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 0 

Query: 1  MEGIHRRPNKGGQSLEVIDVRNLCENKKYLNQSQKRTIVDPTFVKRHVNKTQESSKSSTK 60
          MEG+H   NKGG+SLEV+DVR L ENK YLNQSQ+RT+VDP+FVKR+V KT E SK   K
Sbjct: 1  MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSKMK-K 60

Query: 61 SWWKAPEMKRRRRVAKYKLYAVEGKSTTS 90
          SWWK PEMKRR+RVAKYKLYAVEGK  +S
Sbjct: 61 SWWKKPEMKRRQRVAKYKLYAVEGKVKSS 88

[Close]
BLAST of Spg000157 vs. NCBI nr
Match: KGN56136.1 (hypothetical protein Csa_009524 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 7.1e-25
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0 

Query: 1  MEGIHRRPNKGGQSLEVIDVRNLCENKKYLNQSQKRTIVDPTFVKRHVNKTQESSKSSTK 60
          MEG+H  PNKGG+SLEVIDVR L  NK YLNQSQ+RT+VDP+FVK++V KT E SKS  K
Sbjct: 1  MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 60

Query: 61 S-WWKAPEMKRRRRVAKYKLYAVEGK 86
            WWK PEM+RR+RVAKYKLY VEGK
Sbjct: 61 KPWWKKPEMRRRQRVAKYKLYGVEGK 86

[Close]
BLAST of Spg000157 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-23
Identity = 62/83 (74.70%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 134 IDSSSEAVDFEAVFQQTRKCSLKMVDYLRVMKTHADNLGQAGSPVSNRSLISQVLLGLDE 193
           + S +E      VFQQTRK SLKM D+LRVMK+HADNLGQAGSPV  RSLISQVLLGLDE
Sbjct: 80  VQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDE 139

Query: 194 EYNPVVAMIQGRVNISWSEMQAE 217
           EYNPVVA IQG+  ISW EMQAE
Sbjct: 140 EYNPVVATIQGKRGISWPEMQAE 162

[Close]
BLAST of Spg000157 vs. NCBI nr
Match: XP_022151002.1 (uncharacterized protein LOC111019023 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-22
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = 0 

Query: 1  MEGIHRRPNKGGQSLEVIDVRNLCENKKYLNQSQKRTIVD--PTFVKRHVNKTQESSKSS 60
          MEGIHRRP KGG+SLE+IDVRNL ENK  L+QS+ R  VD  P+  ++ + K  ESSKSS
Sbjct: 1  MEGIHRRPKKGGRSLEIIDVRNLSENKLSLSQSRSRAAVDPSPSTKRQAIKKPSESSKSS 60

Query: 61 TKSWWKAPEMKRRRRVAKYKLYAVEGKSTTS 90
           KSWWK PEMKRRRRVAKYKLY VEGK   S
Sbjct: 61 VKSWWKNPEMKRRRRVAKYKLYTVEGKVKNS 91

[Close]
BLAST of Spg000157 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-20
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 134 IDSSSEAVDFEAVFQQTRKCSLKMVDYLRVMKTHADNLGQAGSPVSNRSLISQVLLGLDE 193
           + S +E    + VFQQT K SL+M++YL++MK+HADNL  AGS VS R L+SQVL GLDE
Sbjct: 145 VQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDLVSQVLTGLDE 204

Query: 194 EYNPVVAMIQGRVNISWSEMQAELLVF 221
           EYNP+V  +QG+VN+SWSEM AELL +
Sbjct: 205 EYNPIVVAVQGKVNLSWSEMHAELLTY 231

[Close]
BLAST of Spg000157 vs. ExPASy TrEMBL
Match: A0A5D3BTT8 (DUF3511 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00370 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.1e-26
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 0 

Query: 1  MEGIHRRPNKGGQSLEVIDVRNLCENKKYLNQSQKRTIVDPTFVKRHVNKTQESSKSSTK 60
          MEG+H   NKGG+SLEV+DVR L ENK YLNQSQ+RT+VDP+FVKR+V KT E SK   K
Sbjct: 1  MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSKMK-K 60

Query: 61 SWWKAPEMKRRRRVAKYKLYAVEGKSTTS 90
          SWWK PEMKRR+RVAKYKLYAVEGK  +S
Sbjct: 61 SWWKKPEMKRRQRVAKYKLYAVEGKVKSS 88

[Close]
BLAST of Spg000157 vs. ExPASy TrEMBL
Match: A0A0A0L7N5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077700 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.4e-25
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0 

Query: 1  MEGIHRRPNKGGQSLEVIDVRNLCENKKYLNQSQKRTIVDPTFVKRHVNKTQESSKSSTK 60
          MEG+H  PNKGG+SLEVIDVR L  NK YLNQSQ+RT+VDP+FVK++V KT E SKS  K
Sbjct: 1  MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 60

Query: 61 S-WWKAPEMKRRRRVAKYKLYAVEGK 86
            WWK PEM+RR+RVAKYKLY VEGK
Sbjct: 61 KPWWKKPEMRRRQRVAKYKLYGVEGK 86

[Close]
BLAST of Spg000157 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 62/83 (74.70%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 134 IDSSSEAVDFEAVFQQTRKCSLKMVDYLRVMKTHADNLGQAGSPVSNRSLISQVLLGLDE 193
           + S +E      VFQQTRK SLKM D+LRVMK+HADNLGQAGSPV  RSLISQVLLGLDE
Sbjct: 80  VQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDE 139

Query: 194 EYNPVVAMIQGRVNISWSEMQAE 217
           EYNPVVA IQG+  ISW EMQAE
Sbjct: 140 EYNPVVATIQGKRGISWPEMQAE 162

[Close]
BLAST of Spg000157 vs. ExPASy TrEMBL
Match: A0A6J1DCB3 (uncharacterized protein LOC111019023 OS=Momordica charantia OX=3673 GN=LOC111019023 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.5e-23
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = 0 

Query: 1  MEGIHRRPNKGGQSLEVIDVRNLCENKKYLNQSQKRTIVD--PTFVKRHVNKTQESSKSS 60
          MEGIHRRP KGG+SLE+IDVRNL ENK  L+QS+ R  VD  P+  ++ + K  ESSKSS
Sbjct: 1  MEGIHRRPKKGGRSLEIIDVRNLSENKLSLSQSRSRAAVDPSPSTKRQAIKKPSESSKSS 60

Query: 61 TKSWWKAPEMKRRRRVAKYKLYAVEGKSTTS 90
           KSWWK PEMKRRRRVAKYKLY VEGK   S
Sbjct: 61 VKSWWKNPEMKRRRRVAKYKLYTVEGKVKNS 91

[Close]
BLAST of Spg000157 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.8e-21
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 134 IDSSSEAVDFEAVFQQTRKCSLKMVDYLRVMKTHADNLGQAGSPVSNRSLISQVLLGLDE 193
           + S +E    + VFQQT K SL+M++YL++MK+HADNL  AGS VS R L+SQVL GLDE
Sbjct: 145 VQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDLVSQVLTGLDE 204

Query: 194 EYNPVVAMIQGRVNISWSEMQAELLVF 221
           EYNP+V  +QG+VN+SWSEM AELL +
Sbjct: 205 EYNPIVVAVQGKVNLSWSEMHAELLTY 231

[Close]
BLAST of Spg000157 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 46.2 bits (108), Expect = 3.9e-05
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 50  KTQESSKSST--KSWWKAPEMKRRRRVAKYKLYAVEGK 86
           + + SS  ST  K WW  PE+KR+RRVAKYKLY+ EGK
Sbjct: 64  RPRRSSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGK 101

The following BLAST results are available for this feature:
BLAST of Spg000157 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033960.18.4e-2673.03DUF3511 domain protein [Cucumis melo var. makuwa] >TYK02584.1 DUF3511 domain pro... [more]
KGN56136.17.1e-2572.09hypothetical protein Csa_009524 [Cucumis sativus][more]
XP_022148963.11.0e-2374.70uncharacterized protein LOC111017501 [Momordica charantia][more]
XP_022151002.11.1e-2268.13uncharacterized protein LOC111019023 [Momordica charantia][more]
XP_022151683.11.8e-2060.92uncharacterized protein LOC111019598 [Momordica charantia][more]
BLAST of Spg000157 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg000157 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BTT84.1e-2673.03DUF3511 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9... [more]
A0A0A0L7N53.4e-2572.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077700 PE=4 SV=1[more]
A0A6J1D5J05.0e-2474.70uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1DCB35.5e-2368.13uncharacterized protein LOC111019023 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1DCW48.8e-2160.92uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
BLAST of Spg000157 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05725.13.9e-0560.53Protein of unknown function (DUF3511) [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 63..86
e-value: 1.8E-10
score: 40.5
NoneNo IPR availablePANTHERPTHR33193:SF13DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATEDcoord: 5..89
NoneNo IPR availablePANTHERPTHR33193DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATEDcoord: 5..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg000157.1Spg000157.1mRNA