Spg000117 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000117
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold6: 23441431 .. 23442810 (+)
RNA-Seq Expression	Spg000117
Synteny	Spg000117

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCTGCCACGTGTCGCACAGGGGTAATCCAACGGTTTAGCCGTTTGACAGCACTAATTATTTACCATGGGCGATTGAAATTCAAGATTTTACCGTTGATGGATTTGATTTACAAATTAAATGAGGTTTGAACGGTAATTCCATTTAATGAGGGGCAAAATCTTTCGGTTACGATTTGTTTTGCTGAAGCTCTATTTATTCACAAGCCTTCGGTAAGTTCTTCTCACTTCATCCTCTTGTTTGTCCCTTGTCGTTTATATTTTCTTCTTGCTTTTGTGTGTGGTAAATTCCTTTGAGTCTTCAATGGCGAAACGAGAGCAAGAAAAGAGAGAGACAATGAGGAAGAGGAGGTACCTATTACCCCCGAAGTACAGAAAGCTAAGGCAAAGAAAAAGAAAACACCAGAAGAGAAAGAGGCTAAGAAGAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAATAGCGCAAAAGGTAGTCGAGGAGGTTGCTGCCGAGGCAATTGAAGAAGGCAATCCGAAGGAGCCTGAAGGACAAAACCCAGAGCAGACTGGGCCGAGAGTTGCGGATACAGAGGAAGTTCGAGAGGAGAATAGAGAGGAAGTCCGAGAAGAAAATGCAGAGGAAGTTCAAGAAAAGCAGTCTGAGGAGGTGCAAGAAGAACAGGCAGAGGTTGCGCCTGAAAAAGGTAATGAGCCAGTACAGGAGGCTCGAGTGGAGGTGATCATGCCGAAAGTGCCAAAACTTCGTCGCGTGAAGCGAAAAGCCAGCCGCGTCAAGGTAGTCTGAACTGATACTCCCTCGCCGCCAAACACTGACTCTGAGAGAGAAAATGCAGAAAGAGAGGAATAGGAGAAAAAAGAGACTGAGGATAAAACAAGAGAGGAAGCAGAGAAAAAGGTGGAAGAAGAAAGGTTGCTCAAGCAAAGGGCAGACAAGGGCAAGAGTGTTACTGCAGCATCAGAGGAACCTGACGAGATAGAAGAGCCACAGTTGCCGTATGTCCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGCTGAGCTGCTGAAGAGGGACTTCCTGTTCGAGAGAGGATTTAGTGGTGATCTTCCACATTTTCTAAGGGCCGGCATTACGAACCACGGCTGGGAGTTATTCTGTTCCAAGCCTAAATCTGTGAACGCGCAGGTAGTGCACGAATTTTATGCAAATATTGACGAGGAAGAGGGTTGCCAAGTTATCGTTTGAGGTGTAGAGGTCGACTGGAGTCCTGGTGCTATTAATGCATTATATAACCTTCAAGATTTCCCACACGCAGGATACAATGAGATGGTTGTGGCGCCATCTAATGAGCAGTTCAGTGATGCTGTGAGGGAAGTTGGCGTTGAAGGGGCGTAG

mRNA sequence

ATGGATGCTGCCACGTGTCGCACAGGGCTCTATTTATTCACAAGCCTTCGAAAAGAGAGAGACAATGAGGAAGAGGAGGTACCTATTACCCCCGAAGTACAGAAAGCTAAGGCAAAGAAAAAGAAAACACCAGAAGAGAAAGAGGCTAAGAAGAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAATAGCGCAAAAGGTAGTCGAGGAGGTTGCTGCCGAGGCAATTGAAGAAGGCAATCCGAAGGAGCCTGAAGGACAAAACCCAGAGCAGACTGGGCCGAGAGTTGCGGATACAGAGGAAGTTCGAGAGGAGAATAGAGAGGAAGTCCGAGAAGAAAATGCAGAGGAAGTTCAAGAAAAGCAGTCTGAGGAGGTGCAAGAAGAACAGGCAGAGGTTGCGCCTGAAAAAGGTAATGAGCCAGTACAGGAGGCTCGAGTGGAGGTGATCATGCCGAAAGTGCCAAAACTTCGTCGCGTGAAGCGAAAAGCCAGCCGCGTCAAGGAGAAAAAAGAGACTGAGGATAAAACAAGAGAGGAAGCAGAGAAAAAGGTGGAAGAAGAAAGGTTGCTCAAGCAAAGGGCAGACAAGGGCAAGAGTGTTACTGCAGCATCAGAGGAACCTGACGAGATAGAAGAGCCACAGTTGCCGTATGTCCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGCTGAGCTGCTGAAGAGGGACTTCCTGTTCGAGAGAGGATTTAGTGGTGATCTTCCACATTTTCTAAGGGCCGGCATTACGAACCACGGCTGGGAGTTATTCTGTTCCAAGCCTAAATCTGTGAACGCGCAGGTCGACTGGAGTCCTGGTGCTATTAATGCATTATATAACCTTCAAGATTTCCCACACGCAGGATACAATGAGATGGTTGTGGCGCCATCTAATGAGCAGTTCAGTGATGCTGTGAGGGAAGTTGGCGTTGAAGGGGCGTAG

Coding sequence (CDS)

ATGGATGCTGCCACGTGTCGCACAGGGCTCTATTTATTCACAAGCCTTCGAAAAGAGAGAGACAATGAGGAAGAGGAGGTACCTATTACCCCCGAAGTACAGAAAGCTAAGGCAAAGAAAAAGAAAACACCAGAAGAGAAAGAGGCTAAGAAGAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAATAGCGCAAAAGGTAGTCGAGGAGGTTGCTGCCGAGGCAATTGAAGAAGGCAATCCGAAGGAGCCTGAAGGACAAAACCCAGAGCAGACTGGGCCGAGAGTTGCGGATACAGAGGAAGTTCGAGAGGAGAATAGAGAGGAAGTCCGAGAAGAAAATGCAGAGGAAGTTCAAGAAAAGCAGTCTGAGGAGGTGCAAGAAGAACAGGCAGAGGTTGCGCCTGAAAAAGGTAATGAGCCAGTACAGGAGGCTCGAGTGGAGGTGATCATGCCGAAAGTGCCAAAACTTCGTCGCGTGAAGCGAAAAGCCAGCCGCGTCAAGGAGAAAAAAGAGACTGAGGATAAAACAAGAGAGGAAGCAGAGAAAAAGGTGGAAGAAGAAAGGTTGCTCAAGCAAAGGGCAGACAAGGGCAAGAGTGTTACTGCAGCATCAGAGGAACCTGACGAGATAGAAGAGCCACAGTTGCCGTATGTCCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGCTGAGCTGCTGAAGAGGGACTTCCTGTTCGAGAGAGGATTTAGTGGTGATCTTCCACATTTTCTAAGGGCCGGCATTACGAACCACGGCTGGGAGTTATTCTGTTCCAAGCCTAAATCTGTGAACGCGCAGGTCGACTGGAGTCCTGGTGCTATTAATGCATTATATAACCTTCAAGATTTCCCACACGCAGGATACAATGAGATGGTTGTGGCGCCATCTAATGAGCAGTTCAGTGATGCTGTGAGGGAAGTTGGCGTTGAAGGGGCGTAG

Protein sequence

MDAATCRTGLYLFTSLRKERDNEEEEVPITPEVQKAKAKKKKTPEEKEAKKRRRQQRAEDQEIAQKVVEEVAAEAIEEGNPKEPEGQNPEQTGPRVADTEEVREENREEVREENAEEVQEKQSEEVQEEQAEVAPEKGNEPVQEARVEVIMPKVPKLRRVKRKASRVKEKKETEDKTREEAEKKVEEERLLKQRADKGKSVTAASEEPDEIEEPQLPYVRFVNNLARAKYAELLKRDFLFERGFSGDLPHFLRAGITNHGWELFCSKPKSVNAQVDWSPGAINALYNLQDFPHAGYNEMVVAPSNEQFSDAVREVGVEGA

Homology

The following BLAST results are available for this feature:

BLAST of Spg000117 vs.


Match Name	E-value	Identity	Description

BLAST of Spg000117 vs.


Match Name	E-value	Identity	Description

BLAST of Spg000117 vs.


Match Name	E-value	Identity	Description

BLAST of Spg000117 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 164..198
None	No IPR available	COILS	Coil	Coil	coord: 96..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000117.1	Spg000117.1	mRNA