Spg000057 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000057
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribosome assembly factor mrt4
Location	scaffold6: 20763444 .. 20774500 (+)
RNA-Seq Expression	Spg000057
Synteny	Spg000057

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGACCCAACATTCCCTGCAGAATCGGTTTAGAAGTTGGTGCGCAATGGGAGGGGACCAGCTACGCCTTTATTTCCGTTATGCTTTTGTCATATAAATAGTCTCTTTTGTAATAATCGTTTTAGGTTTTACTTTGGTAAATAGCTGAAAGCTATAGGAGAAAGGAGAGATTACCGGCCCTCTCGAATTGGCCGGGAGCTTTTGTAATCGTTTAGCTCTTTCTCTGATTATCAATACAACTTGTGAGGCAAAAATTTTAAACACCTGCTAGAACAAAAAACTACACTTCTAAACAACATATTCAACTACACCACCATACTACAACACAACAAAACTCCACAGAACAAGCTGCGAGTTAGGTCTCGCATTATCAACTACTATCTAACCAAGAACACGAGTTTAACAAAGCTTGTAACATTAGCTCATTCAATACAAACTTAATTATTATTAACTAAATGAATAGATAGAGTTCTTTAAAACAAACACAACTAGACCTAGAGTTTAACAAGAATGATCAGAACTGAACCTAACAGGACAACAACTGTCCAACCAAGTTAAGCAACAAGCTATCCAGCATGAAAATAAAATGGAAAACAGCGCAGACTAGCTATGGTCCTTCCTCATATGCCTCCTCTGCATCACCATGGTCCACGCAGTCCTCATAACCTGCAAAATCTGGTAGTTGGTATCAGAGCGGAGTTGTTCCTGTAGACTGGCCTAGGAAATCTAGGTTGTTTGGGTGTCTAGGGTTATGGTCTTCCTCGTTTCTCCTCTCCATCACCAGGTACGTTGGTCTGTTTGTGATATTATTATGTTGCCTGTATGTTCGAATTATCTGTTGGCATGATTATTTTTTTATTTACTTGGTTGTTTTGCATAGTTATTGTTGCTTGCTTGCATCCTTATTGTGTGACTTGGTTGCCTTGTCTGAGCATGTTGTTTTCCTATAATTGCTTTATTATATGGTAGCTAGGCTTAGGGTGCTCCCGTTAGGTGGTTAGTTAGCTTGTTTTGATTGCATGATAGTAGGATTAGGTTGCCACCTAGTTTTAGGTTAGAGCTTTAGTCCCGGTTGCTATCTATTCTTTGACCTTAGCACCGTCTTCCCAGTCGATGACTTGTGGTCGTGGACCTAGAATCCCAGCTAATAGGCAAGAGAATCAGGCGGGTGATATCAATGCTCAGCAAGGGGCCGATCCTCTGATTCCCCCTTTGCAGGAAGTTAATCCCCCGATTCCTCCTATTCAGCCCGGAGTTGACCTTCCGCCCCCTCCTCCTCCTTCGGCCCCTCCTACAGCTCCTATGTTGATCACTCTGGAAGCCCTCCAGACCATGTTCGATAACATGGCCCAGAGAAATGCCAGGCCACCGCGGAACCATAATTGGGTACCTGAGAACGCAGAGGAATCCCAGTTCATTAGAGACTTCAAGCGCTATGGGCCTCCCTTTTTTGACGGGCAATCCGAGAATCCTGTGGCAGCAGAGCAGTGGGTCGCTGATTTAGAGGCACTGTTTGACCTCATGAGCTGTAATGATCCCCTGAAGATAGAGGAACCGTCTTCATGCTCAAGGATGACGCTCGCACGTGGTGGAAGTCTGTGGCAGCTGTCGAAGAGCATGCTAATCAGCCGATTTCATGGGAAAGGTTCAAAGACCTGTTGTACGATTATTACTTCCCGGAGACAGTCAAAGATGACAAAGAAGCTGGGTTCCTCCATTTGACCTAGGGAAGTATAACCGTAGTGCAATATGAGAGGAAGTTCACTGCGTTGTCTCGCTTCGCTCCTGACCTTGTCAGCACACCGAAAAGGAAGATCAAGAGATTCATAAAGGGCCTCCGTGAGGAAACTCGTGGTTCTGTGGCCCTGAGCAGACCCATGACTTTCGTTGAAGCGCTCTCAGGCGCGTTGATCATAGATAAGAATGTGGCAAGGAAGATGCAACCTCGCTGGGGAGAAGCTTCATCGTCTGGTGTTAAAAGGAAGCCTCCTCCCATGCCCGCACGTCTGTCGACCAAGGCCCCTCGTCAGCAGCAGAGGCCAGCTCCTGTCGTCCCTGTGTGCGCTACGTGCAATAGGTGCCATTCTGGTCAATGCTGGACAGGTGATAAGGTCTGTTTCAATTGCGGTAAAGAAGGACATTATGCCAGGCAGTGTCCCACTAAAGGCGAAGCAAATGCTGAGAAGCCAGCCCTTAAGGCCCCACCAGTGCAAGCTCAAGGTGGAAATCAGAGGGCGCGTGTCTTTGCCCTCACGAAAGAAGAAACAGATGATGAGGATGTCGTGGTTACAGGTACGTTCACTCTAACCTTGTCTTGTGTGTGATTGCATGGTTGTGAATCTTATTCTTGTCACTGGTTGCTTCAGGAATTATTTTGGTTCTGAGTGTCCCCGCCTTTGTTTTGTTTGATTCGGGGTCAAGTCATTCATTTATTTCTTCAGTGTTTGTTAGCCAAGCAAATCTTGAGTTAGAACCGTTAGGTTATCTTCTTTCGGTATCTACACCCTCCGGCTCTGTTTTGCTTGCTCAACAAGTAGTCAAGTTCGGAGTAGTCTCGATTGCAGGTCAGACCCTTGAAGCGAGGTTAATCCAATTGGATATGCACGACTTCGATGTAATCTTGGACATGGACTGGTTGGCTAGCAATAAAGCCACCATTCATTGTGCTAAGAAGGAGGTGCATCTCAAATTGCCCTCAGGCCAAGGGTTTAAGTTTAAGGGATCGAAGAGCGGAAGTCCTAAGGTAGTTTCTGCCTTAAAAGCCAAGCTGCAGCATGGAGCTTGGGCGTACTTGACAAGTGTGGTGGATGTTTCTAAGGAATCGCCTAGTTTGGACTCTGTCCCTATTGTTAAAGAGTTCCTAGATGTCTTTCCGGAAGATCTCCCTAGGCTACCTCCAACTTGAGAAGTGGACTTCTGTATAGACCTTCTTCCTGGGACAACACCATTGTCTACACCTTATACGATGACACCAGCTGAGCTCAAGGAACTCAAAGTGCAGCTTGAGGAGCTGTTGGATAATGGGTTTATTCGTCCCAGCGTTTCCCCTTGGGGTGCTTCGGTCTTGTTCGTCAGGAAGAAAGATGGTTCAATGAGGCTCTGCTTTGACTATCGGGAGTTAAATAAGGTGACTGTGAAGAACAAATACCCCCTCCCTCGTATTGATGATCTCTTTGATCAGCTTCAGGGAGCCAGGGTGTTCTCGAAGATCGATTTGTGTTCTGGTTACCATCAACTGAGGATTAAGGAAGCCGACATCCCTAAGACTGTCTTCAGGACCAAGTATGGCCATTACGAATTCACTATGATGTCTTTTGGACTTACCAATGCTCCTGCAGCCTTCATGGATCTCATGAATCGTGTGTTCAAAAGCTTCCTGGACTCGTTTGTGATAGTTTTCATTGATGACATCTTGATCTATTCTAAGAGCAAGAGTCAGCACGAGCAGCACCCCAGGCAGGTTCTGGAAGCCTTGAGGAGCAATGAACTCTATGCTAAATTCTCAAAGTGTGAGTTTTGGCTGGATGAAGTTGCTTTTCTCAGCCATGTGGTTACCATGGATGGTATTGCAGTTGATCCGTCTAAAGTGGAAGCAGTGCGTAGTTGGCCCATACCCAACACAGTGACTGAAATCCGAAGTTTTCTTGGGTTAGCAGGCTACTATCGAAAGTTTGTCCACGACTTCTCAAGCCTTGCAGCACCGTTGACTCTGTTGACTTGTAAGACTGCGACCTTTACCTGGAGTGAGGATTGTGAAAAGAGTTTCCAGGAGTTGAAGGATCGGTTGACCACTGCCCCAGTGCTAACCATCCCTGATGAATTCGGGGGAATGGTGGTGTACAGTGATGTGTAAGGTTTCCCTTACAAAGAACAAGTTTGAAACAAGGAAGATCTTTTTACTGAATATTTCAACCAATTTGAGAGGGTTGAATTCTCTCTAGACAAGACTTACAACTGAACTTTTTCATGCCTTCATCCTTCCCTTATCCCTTCTTAAATAGACTCCTGACTTGCTGTGTTATTATGACTACATGACCATTGACATTCCCTAAACCAACTGCAAGTGAAGTTCATGTTCTTCCATGGTCGGGCTGTAGATCACTATGTCATCGAGATAAACCACCACAAATTTGTCGAGATACTCGTGGAACACTTGGTTCATTAGTGTGCAAAAGGTGGCCGGAGCATTTGTCAGGTCGAATGGCATGACTAAGAACTCGAAGGCCCTGTACCTTGTGACACACGTTGTCTTAGGTTCATCTCCTTCGGCGATGCGCACTTGGTAGTATCCCGACCTGAGATCTAATTTCGAGAAATACTTTGCCGCGTGTAGACGATCAAACCAGTTGGTGATAATGGGTAGTGGATACTTGTTGCGCACCGTGAGCTTGTTGAGGGCTCGGTAGTCAATGCATAACCGCAGGCTGTCGTCTTTCTTTTTCTGGAACAACACTGGGGCCCCATATGGAGCCTTCGTGGGTCTAATGAACCCAACATTTAGTAACTCATCTAACTGTTTCCGCAGCTTGGCTAACTCATGCGGTAGGCATTTTTAGCGGGCGGTCTCGCTCCTGGTAACAGTTCGATTTCGTGATCTATCCCCCGCCGTGGAGGTAGGGTCCTGGGCAGACTGTCTGGCATTACATCACGATACTTGTCCAACACACGTTGGATCTCACTGGGGACTAGTGCTTCCACATTTTCGTTTTCTGTCATTGGGATGGCCATGAATGTGGGTTCGTCGTGTGTAAGGCCTTTCTTTAACTGGAGGGCTGATATATAAAATATCTAAAATACTATCAGTATCTATCTATATATATAAATGTTAGGCTAAATTATAAAAAATACCCCTAAACTGTTGTGTTTGTTTCAAAAATGCCCCTGAACTTTAAAAAGTTTAAAAAATACCCTTGAACTTTAAAAAGTTTCAAAAATACCCTTGAACTTTGAAAAATGTTTAAAAAATACCTTTGCCGTTAATTTTGGATGAAAACTGTTAAAGTTTTAGTTTCAAAAATACCCTTGAACTTTAAAAAAAAATTCAAAAATACCTGTATTGAAAAATGTTTTTTTTCCTTCTCCTACCATAAATTAATTCTTCCTTCGTGAAAATTAATGAGAAACTTTACTTATTTTTCATGTATTTATAATCTATGAGCTTTTCTTATCTTTCAACACATCCCAATAACTTGACTAGATTTTCGTGTTGAAACTTCAATATAACTTTTGTTTTGTTCTTCAAATTCTACATGTGCTTGACTTTATTTGTTGGTAGTCTTTTCAATATTATTTCCTCACCAACCATTACCCATTAGCTTTCTCTATATTCATTTTATGAAAAATAAATGAAACTATTGTTGTATACGGGTTCTAACAATTCTTAAATGTTAATAAGAACAAAATCATATATAAAACTTTTGATTAATTAATCTTATAAATTGGACCAAACCCACAGTCTTAATGTTATGTAATAAGTATAAGTACAATCAAATTTAACCGTACTGAAAAAACCTTAACTCATATATTTTATGAAATCGAAAGCATTTAAGTTATTTTATTGAAATTGATTATAATATTTAATTTCTTTTCTTTTGTGAAACAATCACAACATTATTCAACTTTTAAAACAAATTCATTATAATATATTATAATATAATATATAATAGCACAAAAAGATATATCACGTGCAATACACGTTTTAAAGACTAGTAAGCTAAAAAGGAAGAAAAAGAGAGTTCATCAAACGTAAAATATTAGTTTTTTTTTTAAAAAAAGAAAAAGAAAAAGAAAGTGCATTTAGGTAATTTTGGCACACAAAACCCTAATTGGGTGGATTTGGAATATCCCATTCTGCGACCCAAAAACCTTCCGTCCAGTCATCACTCTCTCTTAATCCTCTCACAGTAGCCGCTTCGCTCCTTCGTGGGTAACTCCTTCCCCATGTCTCTCTCTATCCCCCTCTAATTCCATGTTTCTCTTGTTGTGATGTTTCTGAGATTTACAGGAATTGGTTCAAGTATATGTACTTCATGCCTTGAAATACTAGATACGTTGTAGTTCTATTTGTCTTGTTCATGTGAGTTTTATCTACTTAGTTGTCATTTAGAATGTAAATGGTTTTAGAATTGTATTTGAGAAGGGTCTTGTGGGGATTCAATTTGAACCTGGTGCACTGCTATGAAATTTGGGGGATTTTCCCCTTTTTTTCTTGTTACAAAAATACCTTTCATGAATTCTTATTCACATACGATATCTTTCACTCGTGAATATAGCGACCAAAAGAATCTGAACTTTTAAGACTCATCTCTCATGCGAAAGTTTCAACTCTTAAGTGATAGAGTTCTTTCCTCACTCAGGCTGTAGAGATCTGTAGTTGGGATGGGTTAATGCTTCCTTATTTATTTATTTATTTATGATTTCTTGATGTTATTTATTCTTATTGTATTTACTGTTTATTTTGTGTATGTCGTCATTGATGATTGGTACAAGTTATTAATGAAATATGTGGATAAGTAATAAGATAGTAATTAAAGGTTTAAATTGAAAATTAATAAATTAAAGGTTTTATTACAAGTTTAGCCCACAATTTGGTCCCTGAACTTTAAAAAGTTTCTAATAGGTCCCTGAACTTTTAATTTTGTGTCCCGCCATCACTCACTTTTATACTTGCAGAGTAGCCGCTTCCTCCACGCCCTTTGTCACTCTCTCGTTCTGCGGTTGGAACTTACGAATCTGCTGGTGTAAAGCAGGTATATTTGCAGCTATTGAAGATGCCCAAGTCGAAGCGTGATAGACCAGGTCCGTTTCAATCACTTCCAACATATTCATGCCATGTTTCCACAAGAAGTTGAATCCTACAAAACTCTTTGGATTTTAATAACCTAGATAGCTATCTACTATTGGATTTTAACTCAGGTCCCCAAACTTGTTTGGTTTCAAGTTTAATTGTGTGTTAGTATGTTTTTAATATGGAGTAACGACTCAAGTATTTCAGTTTTGTAAGGTTCCTCGGAGCAAATGTTTTTTATAAGGTAGCTTGATGCCTTTTTTTACTCTTTGTCAATGATAAACTGTGATAGGAGTGGTAGCAAGATAGTGTGAGCCTTCTAATTTGATGGAAAAACCATTTTAGTATAAGGTGTTGTCAAGAGCTGGCCAAGGTGAAAGGTTCCATCTGTATTCAAAATGTAGAGCTTACAACCTAGGGAACATGATGTCTAAAGTTCCTGTATTATTAACTGAGATTAATTTCTAGATAAGAATTGAAACAATATTTAGTAGGCTAATGAATGTTGTTAGCTCTACAACCTAGGGAACATGATGTCTAAAGTTCCCGTATTTATTAACTGAGATTAATTTCTAGATAAGAATTGAAACAATATTTAGTAGGCTAATGAATGTTGTTTAACAGAAACCAAGCAACAGTAAACCTAGGAGAACTTAATAACTCTCTTTAACATAGAAAGATGCTAAAATTTGTTCTTTTAATTCAAGGTTCTTGTTAAATTATGGGTTAGTTAATAAGGTAGTTTCTTTTCAAAAGTTTTGTCTGAGGCAATTTAAGAATTTAAAGGACTTGTGGTGCTAGTATTCATTGTCAAACTTGTGTGGGAAAACTTAAAGGAAAGAGGAAAAATATGAACAACTTAGTCCATTGCAGATTAGTGTTTTGACTGACTTTTCGGTGGGATAAATGCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTTTTCACTGTTGAGAACATGCGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTAAAGTCAACTAGCAGGCAAGTTGTATTTTCTTACTTTATTATATATTTGCTGCATCATTTCAAATATTGATTAGTGATGAGAATGTTACTTCCTTTATGTTGTTTGGTTGGCTTCTGGGAAGCATGGGGAAAGATGAAAATAATGAATAGCATGTTTTAGGAGAAAAGATGATAATATGCGGTTGCCCTTGCGACTGAAAACAATAGTTTTAGCAGGTTACCATAACTAACAGAATTGCTGTATGACACTCAATTTAGCATTTGTTTCTACGATTGCAGACCAGCCTTCTCCTTGTTTTAAAAAGTGTCACTGAAAAAAGGGTTTACAACCTTCATTACCTCGTGCTTAGTGTGGTCTCACCTGGGGCTGCAGCTTGTGTAGATTTGTACTCTTTCATAACATGTGTTCTCTATTCTTTTTCCTTTTTCATCATTGTTATGAAAATTATATTACCTGACCTTTGAAATATTTTTAGCTGTACCTGTACATTATTGTATTAGGCCTCTGATGCTTGTTGCTATTTTTAAATTGTAGAAATGTTTAATGAGGCTAATCGGGATATTCTAGTTATGAAGCTTGTTTAGTGCAATTTTTGAAATGATGCGGCAGTTGAGTGGCATTTTGAGATATCATGCATAACCTCTCTATTTCTCTAATGAAATGATGTGACCTGACCTGACCTGACTGAATAGATTATGTGGGTTCCAAAATTTATTATTATTATTTTTTTCCAATGGATAGATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCTGATGAGATTCGACCAGGCCTTTACAAGGTTTCTAAGGTGAATCTCTTTTTCCACATTGCATATAGTTTGAGTGTTCCTTTTCTGTAGCCGTTGGGAAGTAACATCCACTCTTCAATTTTTCAGCTTCTGCAGGGAAATACTGGACTTTGTTTCACAAACTTACCAAAAGAAGAGGTTGAGAGGTAAACCAGACATAGTCTATTTTTAACATTGGCAAGCTCTGCCAAAAGTGATAAATTGTATAGTTGCTATTTCCTTTGTCAATTTAAATACCACAGTATTTAAATTTAATTCACTATGCATTCTGTTTTTAGTTTAGTAATTGAAGTATCCGATAAATTGTGCTCATAAATTTCCATATTTATGAATGCAAAATTCTGAAATTTTCATTTGGGAAAGACGTTAAAATGAAAAAAAAAAATTTGTCTTTGGTGTTGAAAAGGAAGGAATAGAAAAGAAAAAGTTAATCTTTGAAGTCGAAGTTGAAAACAAAAATTGAAATTGGTATGTCTTCAAAGTCAAAACAACAATTTTCCAACTTCATAATATCGCATAGTTATGACTATTTTTCTGTGCCAAATTCAATAAAAATTTACAATCTGGATTATGATTACAGTTTTGCAACCCAACCCCCAACCCAAAACAGAAACAAAAGAAGATTGTTATTGTCAGTAGTAAGATTCTCTTAATGGGTTGTTGACATTTCAATTCTATAAGAAGGGACTTTCAGAATTCGTAAAATGCTTAAAAGGAAATGCTCGGGTATTTGCTGTTTTACAATAATGCTTGGTTTAATTTTTAATGTTTTGTTATACAGGTTATTTAATGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGCAGCCACAGAAAAGGTTTCTGCCCCTTCGAACACATGACATTTATTTAGTTTTCTTTTATAATAAACTGATTTTTATTTTTCATGGTTCTAAAACTGATTGCACTTTTTGAGTGTAATGAATAATGATTCAACAAAAAGGTCTAGTATCATCTTATATCATGTGTTATAATATGCATGAACTTGGTGGTTGGTTGCTTTATTGAAGTTTTAATGATATTAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTTAGCCATGAGATGGAGCCTTCTCTACGGAAGTTGGGTTTGCCTGTTCGTTTGAATAAGGGTCAGTAAATACACACATTGTGCTTGCAAGCCCTACTTATTACTTATAGTAAATAAAATGTTGGTTATAAATCAGAATTGTTGAGGAATTGCAGGTGTGGTGGAACTTGTATCAGACTACGTTGTATGTGAGGAGGGCAAGTCTCTATCACCGGAGTCAGCTGGCATACTGGTTTGTATCATGTCATGACTTTCTCTTTCCTCAAATATGTATTGAATTTGATTTGACTTGTAAACGAGGTTCGATAGGCTTGTTTCTTGGTTTGTTATTTTGAGAATCAGATGTGTTGGTGGAAGTAGCATTTTTTGTTGCTTCCAATTCCCATCTCAAATTAAGAATTAAGGGTGTGTTTGGAGATGCTTTTAGAATAAGTACTTTTAGAAAAGCACTCTTGTTATAGGCACTTAAGTAATTATAGGCATTTTATATTTTGGGGGATGACTGAGATGTTTGATTTGATATGGTTGCAGCGTGCGTTGGGGATAAGGATGGCAACTTTTCGGCTGAATTTGGTGTGCAGATGGAGCCCTGGTGACTATGAACTTTATATTGATGGACCAGATAATTCTGACGTTGAATCCGCCTAAAATCTCCAACACAGGAAATCTCATTATTTACTACTTACCAATTAGGATAATATATATGAATGAATGCCCCTCCTCCGTAGGATTCAATGCCATAATATGAATGGCATTGGGACTTGTGGTTTTGTTTTTGTAGATTATTTTAGAAATTCTCAATTTTGTTGTGTTTAGTGAGGATAGACGAGTATTATTGTGAGTTGGTAGCTTTTCATTTGTATTATTATCTGATGCGTTTGGCTTTACATTCAAAGAAGATAGTACTTTATGAAATTCTAACAATTTTGGGTATGTGATACAAGAATTGTTGAATGTACAATATAATTAATATGGAATAATGGCAAAATTATTGAAGGCGGGTGCAAAGAAATCACTGGAGATGAGGGCTGTAGCACAAGGGTTGAAGGTGATTGTATAAGACCTTCATGGAATCCCACATCGACCTCACAGGAGTGCAAGTGGGCTAGAATAGTTTGGTTATGGTTTGGCGAACAAGGCTATGGAATGCATCCTCCCAAGTAATAGAAGATATTGCTTGTTCTGATTACACTGTTTAGTTTTGCTTTGTGGTTCTGTTCTTTATAGTTTATACATTGAAAAGAAAAAGTATACTAGAAATATTCACTCGGTGAAAATGCATCTTTGTGTCTG

mRNA sequence

ATGCAGACCCAACATTCCCTGCAGAATCGGTTTAGAAGTTGGTGCGCAATGGGAGGGGACCAGCTACGCCTTTATTTCCGTTATGCTTTTAGCGGAGTTGTTCCTGTAGACTGGCCTAGGAAATCTAGGTTGTTTGGGTGTCTAGGGTTATGGTCTTCCTCGTTTCTCCTCTCCATCACCAGGCTTAGGGTGCTCCCGTTAGGTGCACCGTCTTCCCAGTCGATGACTTGTGGTCGTGGACCTAGAATCCCAGCTAATAGGCAAGAGAATCAGGCGGGTGATATCAATGCTCAGCAAGGGGCCGATCCTCTGATTCCCCCTTTGCAGGAAGTTAATCCCCCGATTCCTCCTATTCAGCCCGGAGTTGACCTTCCGCCCCCTCCTCCTCCTTCGGCCCCTCCTACAGCTCCTATTAGCCGCTTCGCTCCTTCGTGGCCGCTTCCTCCACGCCCTTTGTCACTCTCTCGTTCTGCGGTTGGAACTTACGAATCTGCTGGTGTAAAGCAGGTATATTTGCAGCTATTGAAGATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTTTTCACTGTTGAGAACATGCGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTAAAGTCAACTAGCAGGCAAACCAGCCTTCTCCTTGTTTTAAAAAGTGTCACTGAAAAAAGGGTTTACAACCTTCATTACCTCGTGCTTAGTGTGGTCTCACCTGGGGCTGCAGCTTGTGTAGATTTGTACTCTTTCATAACATATTATGTGGGTTCCAAAATTTATTATTATTATTTTTTTCCAATGGATAGATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCTGATGAGATTCGACCAGGCCTTTACAAGGTTTCTAAGCTTCTGCAGGGAAATACTGGACTTTGTTTCACAAACTTACCAAAAGAAGAGGTTGAGAGGTTATTTAATGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGCAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTTAGCCATGAGATGGAGCCTTCTCTACGGAAGTTGGGTTTGCCTGTTCGTTTGAATAAGGGTGTGGTGGAACTTGTATCAGACTACGTTGTATGTGAGGAGGGCAAGTCTCTATCACCGGAGTCAGCTGGCATACTGCGTGCGTTGGGGATAAGGATGGCAACTTTTCGGCTGAATTTGGTGTGCAGATGGAGCCCTGGTGACTATGAACTTTATATTGATGGACCAGATAATTCTGACGTTGAATCCGCCTAA

Coding sequence (CDS)

ATGCAGACCCAACATTCCCTGCAGAATCGGTTTAGAAGTTGGTGCGCAATGGGAGGGGACCAGCTACGCCTTTATTTCCGTTATGCTTTTAGCGGAGTTGTTCCTGTAGACTGGCCTAGGAAATCTAGGTTGTTTGGGTGTCTAGGGTTATGGTCTTCCTCGTTTCTCCTCTCCATCACCAGGCTTAGGGTGCTCCCGTTAGGTGCACCGTCTTCCCAGTCGATGACTTGTGGTCGTGGACCTAGAATCCCAGCTAATAGGCAAGAGAATCAGGCGGGTGATATCAATGCTCAGCAAGGGGCCGATCCTCTGATTCCCCCTTTGCAGGAAGTTAATCCCCCGATTCCTCCTATTCAGCCCGGAGTTGACCTTCCGCCCCCTCCTCCTCCTTCGGCCCCTCCTACAGCTCCTATTAGCCGCTTCGCTCCTTCGTGGCCGCTTCCTCCACGCCCTTTGTCACTCTCTCGTTCTGCGGTTGGAACTTACGAATCTGCTGGTGTAAAGCAGGTATATTTGCAGCTATTGAAGATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTTTTCACTGTTGAGAACATGCGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTAAAGTCAACTAGCAGGCAAACCAGCCTTCTCCTTGTTTTAAAAAGTGTCACTGAAAAAAGGGTTTACAACCTTCATTACCTCGTGCTTAGTGTGGTCTCACCTGGGGCTGCAGCTTGTGTAGATTTGTACTCTTTCATAACATATTATGTGGGTTCCAAAATTTATTATTATTATTTTTTTCCAATGGATAGATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCTGATGAGATTCGACCAGGCCTTTACAAGGTTTCTAAGCTTCTGCAGGGAAATACTGGACTTTGTTTCACAAACTTACCAAAAGAAGAGGTTGAGAGGTTATTTAATGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGCAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTTAGCCATGAGATGGAGCCTTCTCTACGGAAGTTGGGTTTGCCTGTTCGTTTGAATAAGGGTGTGGTGGAACTTGTATCAGACTACGTTGTATGTGAGGAGGGCAAGTCTCTATCACCGGAGTCAGCTGGCATACTGCGTGCGTTGGGGATAAGGATGGCAACTTTTCGGCTGAATTTGGTGTGCAGATGGAGCCCTGGTGACTATGAACTTTATATTGATGGACCAGATAATTCTGACGTTGAATCCGCCTAA

Protein sequence

MQTQHSLQNRFRSWCAMGGDQLRLYFRYAFSGVVPVDWPRKSRLFGCLGLWSSSFLLSITRLRVLPLGAPSSQSMTCGRGPRIPANRQENQAGDINAQQGADPLIPPLQEVNPPIPPIQPGVDLPPPPPPSAPPTAPISRFAPSWPLPPRPLSLSRSAVGTYESAGVKQVYLQLLKMPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFFPMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA

Homology

[Close]

BLAST of Spg000057 vs. NCBI nr
Match: XP_022933518.1 (mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover protein 4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 413.7 bits (1062), Expect = 2.1e-111
Identity = 219/288 (76.04%), Postives = 226/288 (78.47%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
           KS+S                                                        
Sbjct: 61  KSSS-------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              RLFFGANKVMQVSLGRTASDEI+PGLYKVSKLL GNTGLCFTNLPKEEVERLFNEYV
Sbjct: 121 ---RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           DYDYARTGS ATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSD+ VCEEGK
Sbjct: 181 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 229

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 465
           SLSPESAGILRALGIRMATFRLNLVCRWSPG++ELYIDGPDNSD+E+A
Sbjct: 241 SLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of Spg000057 vs. NCBI nr
Match: XP_023529350.1 (mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 412.1 bits (1058), Expect = 6.1e-111
Identity = 218/288 (75.69%), Postives = 226/288 (78.47%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
           KS+S                                                        
Sbjct: 61  KSSS-------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              RLFFGANKVMQVSLGRTAS+EI+PGLYKVSKLL GNTGLCFTNLPKEEVERLFNEYV
Sbjct: 121 ---RLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           DYDYARTGS ATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSD+ VCEEGK
Sbjct: 181 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 229

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 465
           SLSPESAGILRALGIRMATFRLNLVCRWSPG++ELYIDGPDNSD+E+A
Sbjct: 241 SLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of Spg000057 vs. NCBI nr
Match: XP_038902849.1 (mRNA turnover protein 4 homolog [Benincasa hispida])

HSP 1 Score: 411.4 bits (1056), Expect = 1.0e-110
Identity = 219/288 (76.04%), Postives = 228/288 (79.17%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRDRPVTLSKTKKKGREHKKSMV+LIRQAVENYNSI+VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVELIRQAVENYNSIFVFTVENMRNLKFKELREQL 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
           KS+S                                                        
Sbjct: 61  KSSS-------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              RLFFGANKVMQVSLGR+AS+EIRPGL+KVSKLL GNTGLCFTNLPKEEVERLFNEYV
Sbjct: 121 ---RLFFGANKVMQVSLGRSASNEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSD+VVCEEGK
Sbjct: 181 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGK 229

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 465
           SLSPESAGILRALGIRMATFRL+LVCRWSPGD+ELYIDGPDNSDVESA
Sbjct: 241 SLSPESAGILRALGIRMATFRLHLVCRWSPGDFELYIDGPDNSDVESA 229

[Close]

BLAST of Spg000057 vs. NCBI nr
Match: XP_022969955.1 (mRNA turnover protein 4 homolog [Cucurbita maxima])

HSP 1 Score: 410.6 bits (1054), Expect = 1.8e-110
Identity = 218/288 (75.69%), Postives = 225/288 (78.12%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
           KS+S                                                        
Sbjct: 61  KSSS-------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              RLFFGANKVMQVSLGRTASDEI+PGLYKVSKLL GNTGLCFTNLPKEEVERLFNEYV
Sbjct: 121 ---RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           DYDYARTGS ATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSD+ VCEEGK
Sbjct: 181 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 229

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 465
           SLSPESAGILRALGIRMATFRLNLVCRWSPG++ELYIDGPD SD+E+A
Sbjct: 241 SLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 229

[Close]

BLAST of Spg000057 vs. NCBI nr
Match: XP_022157470.1 (mRNA turnover protein 4 homolog [Momordica charantia])

HSP 1 Score: 405.6 bits (1041), Expect = 5.8e-109
Identity = 215/288 (74.65%), Postives = 224/288 (77.78%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
           KSTS                                                        
Sbjct: 61  KSTS-------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              RLFFGANKVMQVSLGRT SDEIRPGL+K+SKLL GNTGLCFTNLPKEEVERLFNEY 
Sbjct: 121 ---RLFFGANKVMQVSLGRTVSDEIRPGLHKISKLLHGNTGLCFTNLPKEEVERLFNEYE 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           DYDYARTGS ATEKVELKEGPLEQFSHEMEPSLRKLG+PVRLNKGVVELVSD+VVCEEGK
Sbjct: 181 DYDYARTGSTATEKVELKEGPLEQFSHEMEPSLRKLGMPVRLNKGVVELVSDFVVCEEGK 229

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 465
           +LSPESAGILRALGIRMA+FRLNLVCRWSPGD++LYI+G DNSDVESA
Sbjct: 241 ALSPESAGILRALGIRMASFRLNLVCRWSPGDFQLYIEGLDNSDVESA 229

[Close]

BLAST of Spg000057 vs. ExPASy Swiss-Prot
Match: A4FV84 (mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.1e-49
Identity = 109/268 (40.67%), Postives = 148/268 (55.22%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
           K +                                                         
Sbjct: 61  KHS--------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              R+FFG NKVM V+LGR+ SDE +  L++VSK L+G  GL FTN  KEEV+  F +Y 
Sbjct: 121 ---RMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYT 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           + DYAR G+ AT  V L  GPLEQF H MEP LR+LGLP  L KGVV L+SDY VC+EG 
Sbjct: 181 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 208

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRW 445
            L+PE A +L+  G  MA F++++   W
Sbjct: 241 VLTPEQARVLKLFGYEMAEFKVSIKYMW 208

[Close]

BLAST of Spg000057 vs. ExPASy Swiss-Prot
Match: Q9UKD2 (mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 5.9e-48
Identity = 107/268 (39.93%), Postives = 145/268 (54.10%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
           K +                                                         
Sbjct: 61  KHS--------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              R+FFG NKVM V+LGR+ SDE +  L++VSK L+G  GL FTN  KEEV   F +Y 
Sbjct: 121 ---RMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           + DYAR G+ A   V L  GPLEQF H MEP LR+LGLP  L +GVV L+SDY VC+EG 
Sbjct: 181 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 208

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRW 445
            L+PE A +L+  G  MA F++ +   W
Sbjct: 241 VLTPEQARVLKLFGYEMAEFKVTIKYMW 208

[Close]

BLAST of Spg000057 vs. ExPASy Swiss-Prot
Match: Q9D0I8 (mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.0e-47
Identity = 108/268 (40.30%), Postives = 146/268 (54.48%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
           K +                                                         
Sbjct: 61  KHS--------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              R+FFG NKVM V+LGR+ SDE +  L++VSK L+G  GL FTN  KEEV   F +Y 
Sbjct: 121 ---RMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYT 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           + D+AR G+ AT  V L  GPL+QF H MEP LR+LGLP  L KGVV L+SDY VC+EG 
Sbjct: 181 EMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 208

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRW 445
            L+PE A IL+  G  MA F++ +   W
Sbjct: 241 VLTPEQARILKLFGYEMAEFKVIIKYMW 208

[Close]

BLAST of Spg000057 vs. ExPASy Swiss-Prot
Match: Q86HD3 (Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.1e-33
Identity = 85/275 (30.91%), Postives = 133/275 (48.36%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           M KSKR+  V ++K  K   E KK +V  I+  V+ Y  IY+FT ENMRN K K +R + 
Sbjct: 1   MVKSKRNVVVNMTKVTKNPGEKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEW 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
            STS                                                        
Sbjct: 61  -STS-------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              +  FG NKV+ V LG++  DE++P L+K+++ L+G  GL FTN PK++V   F  Y 
Sbjct: 121 ---KFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYS 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           + D+ R+G  + E + +KEGP+   +H ME  LR LGLP  L  GV+ +  +Y +CE G 
Sbjct: 181 EKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGV 215

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRWSPGDYEL 452
           +++PE + +L+     ++ F+ ++   W+  ++ L
Sbjct: 241 AVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFTL 215

[Close]

BLAST of Spg000057 vs. ExPASy Swiss-Prot
Match: Q7S302 (Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 9.4e-30
Identity = 87/293 (29.69%), Postives = 128/293 (43.69%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKR +   L++  KK RE K+ + + IR+ + NY   +VF+++NMRN   K++R++L
Sbjct: 1   MPKSKRAKVYNLTQVTKKNREQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKEL 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
                                                                       
Sbjct: 61  NDC--------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              R+FFG  K+   +LG T  D    GL K+SK L G+ GL FTN    E++  F    
Sbjct: 121 ---RIFFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLT 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQ------------FSHEMEPSLRKLGLPVRLNKGVVE 416
             D+AR GS AT  + +  GPL               SH +EP LR+LG+P R+ KG V 
Sbjct: 181 QVDFARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKVC 233

Query: 417 L------VSDYVVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGDYEL 452
           L        DYV+C+EG++L      +L+   I ++ FR+ L+  WS    E+
Sbjct: 241 LGDEAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEV 233

[Close]

BLAST of Spg000057 vs. ExPASy TrEMBL
Match: A0A6J1F4Z2 (Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 1.0e-111
Identity = 219/288 (76.04%), Postives = 226/288 (78.47%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
           KS+S                                                        
Sbjct: 61  KSSS-------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              RLFFGANKVMQVSLGRTASDEI+PGLYKVSKLL GNTGLCFTNLPKEEVERLFNEYV
Sbjct: 121 ---RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           DYDYARTGS ATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSD+ VCEEGK
Sbjct: 181 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 229

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 465
           SLSPESAGILRALGIRMATFRLNLVCRWSPG++ELYIDGPDNSD+E+A
Sbjct: 241 SLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of Spg000057 vs. ExPASy TrEMBL
Match: A0A6J1I1E2 (Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 8.7e-111
Identity = 218/288 (75.69%), Postives = 225/288 (78.12%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
           KS+S                                                        
Sbjct: 61  KSSS-------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              RLFFGANKVMQVSLGRTASDEI+PGLYKVSKLL GNTGLCFTNLPKEEVERLFNEYV
Sbjct: 121 ---RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           DYDYARTGS ATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSD+ VCEEGK
Sbjct: 181 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 229

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 465
           SLSPESAGILRALGIRMATFRLNLVCRWSPG++ELYIDGPD SD+E+A
Sbjct: 241 SLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 229

[Close]

BLAST of Spg000057 vs. ExPASy TrEMBL
Match: A0A6J1DT71 (Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 2.8e-109
Identity = 215/288 (74.65%), Postives = 224/288 (77.78%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
           KSTS                                                        
Sbjct: 61  KSTS-------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              RLFFGANKVMQVSLGRT SDEIRPGL+K+SKLL GNTGLCFTNLPKEEVERLFNEY 
Sbjct: 121 ---RLFFGANKVMQVSLGRTVSDEIRPGLHKISKLLHGNTGLCFTNLPKEEVERLFNEYE 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           DYDYARTGS ATEKVELKEGPLEQFSHEMEPSLRKLG+PVRLNKGVVELVSD+VVCEEGK
Sbjct: 181 DYDYARTGSTATEKVELKEGPLEQFSHEMEPSLRKLGMPVRLNKGVVELVSDFVVCEEGK 229

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 465
           +LSPESAGILRALGIRMA+FRLNLVCRWSPGD++LYI+G DNSDVESA
Sbjct: 241 ALSPESAGILRALGIRMASFRLNLVCRWSPGDFQLYIEGLDNSDVESA 229

[Close]

BLAST of Spg000057 vs. ExPASy TrEMBL
Match: A0A6P4AGB2 (Ribosome assembly factor mrt4 OS=Ziziphus jujuba OX=326968 GN=LOC107427781 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 4.8e-93
Identity = 184/288 (63.89%), Postives = 210/288 (72.92%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRDRPVTLSKTKKKGREHK+++V+ IRQAVE+Y+SIYVF  ENMRNLKFKE RE++
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKEAIVNAIRQAVEDYSSIYVFKFENMRNLKFKEFREKM 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
           KSTS                                                        
Sbjct: 61  KSTS-------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              R F G+NKVMQVSLGR+A+DE+RPG+YKVSKLL+G+ GLCFTNL KEEVERLFNEY 
Sbjct: 121 ---RFFLGSNKVMQVSLGRSAADEMRPGIYKVSKLLRGDAGLCFTNLAKEEVERLFNEYE 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           DYD+ RTGS ATEKVELKEGPL+QFSHEMEP LRK G+PVRLNKGVVELV+DYVVCEEGK
Sbjct: 181 DYDFGRTGSIATEKVELKEGPLDQFSHEMEPFLRKQGMPVRLNKGVVELVADYVVCEEGK 229

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 465
            LSPE+A ILR LGI+MATFRL+L+CRWSP D+ELYID P +SDVES+
Sbjct: 241 PLSPEAARILRLLGIKMATFRLHLICRWSPSDFELYIDAPGDSDVESS 229

[Close]

BLAST of Spg000057 vs. ExPASy TrEMBL
Match: A0A498JEA3 (Ribosome assembly factor mrt4 OS=Malus domestica OX=3750 GN=DVH24_033280 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.2e-91
Identity = 184/295 (62.37%), Postives = 220/295 (74.58%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRDR VTLSKTKKKGREHK+++V+ IRQA E+Y+S YVF+ ENMRN KFKE REQL
Sbjct: 1   MPKSKRDRQVTLSKTKKKGREHKETIVNTIRQAAEDYSSAYVFSFENMRNHKFKEFREQL 60

Query: 237 KSTSRQTS-------LLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSK 296
           KS SRQ         L++   S      YNL            + C+ +  FI  +    
Sbjct: 61  KSNSRQVHFQDAPFVLVVTGNSFLSNGCYNL------------SMCI-MRDFIVVF---- 120

Query: 297 IYYYYFFPMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVE 356
                     R F G+NKVMQ++LGR+ SDEIRPGL+K+SK+L G+ GLCFTNLPKEEVE
Sbjct: 121 ----------RFFLGSNKVMQIALGRSESDEIRPGLHKISKVLHGDAGLCFTNLPKEEVE 180

Query: 357 RLFNEYVDYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDY 416
           RLFNEY +YD+ARTGS +TEKVELKEGPLEQFSHEMEP LRK G+PVRLNKGV+ELVSD+
Sbjct: 181 RLFNEYEEYDFARTGSISTEKVELKEGPLEQFSHEMEPFLRKQGMPVRLNKGVIELVSDF 240

Query: 417 VVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 465
           +VC+EGK LSPESA ILR LG +MA+FRL+L+CRWSPGD+E Y  GPD+S VES+
Sbjct: 241 LVCDEGKPLSPESARILRLLGTKMASFRLHLICRWSPGDFEQYAPGPDDSGVESS 268

[Close]

BLAST of Spg000057 vs. TAIR 10
Match: AT1G25260.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 297.0 bits (759), Expect = 2.7e-80
Identity = 160/294 (54.42%), Postives = 195/294 (66.33%), Query Frame = 0


Query: 177 MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 236
           MPKSKRDRPVTLSKTKKKGREHK+ +V+ IR+AVE Y+S+YVF+ ENMRN+KFKE R+Q 
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60

Query: 237 KSTSRQTSLLLVLKSVTEKRVYNLHYLVLSVVSPGAAACVDLYSFITYYVGSKIYYYYFF 296
           +                                                           
Sbjct: 61  RHNG-------------------------------------------------------- 120

Query: 297 PMDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYV 356
              + F G+NKVMQV+LGR+A DE+R G+YKVSKLL+G+TGL  T++PKEEVE LFN Y 
Sbjct: 121 ---KFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAYE 180

Query: 357 DYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDYVVCEEGK 416
           D D++RTGS A E VELKEGPLEQF+HEMEP LRKL +PVRLNKG VELV+D+VVCEEGK
Sbjct: 181 DSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEGK 235

Query: 417 SLSPESAGILRALGIRMATFRLNLVCRWSPGDYELYIDG------PDNSDVESA 465
            LSP+SA ILR L ++MATF+LNL+CRWSP D+ELY +        D SDVE++
Sbjct: 241 QLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDLSELYREDLSDVETS 235

[Close]

BLAST of Spg000057 vs. TAIR 10
Match: AT3G11250.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 57.8 bits (138), Expect = 2.7e-08
Identity = 39/142 (27.46%), Postives = 68/142 (47.89%), Query Frame = 0


Query: 301 LFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYDY 360
           +  G N +M+ S+   + +     +  +  LLQGN GL FT    +EV     +Y     
Sbjct: 53  VLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAP 112

Query: 361 ARTGSAATEKVELKEGPLEQFSHEMEPS----LRKLGLPVRLNKGVVELVSDYVVCEEGK 420
           AR G  A   V ++ G     +  ++PS     + L +P ++NKG VE+++   + ++G 
Sbjct: 113 ARVGLVAPIDVVVQPG-----NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGD 172

Query: 421 SLSPESAGILRALGIRMATFRL 439
            +    A +L  LGIR  ++ L
Sbjct: 173 KVGSSEAALLAKLGIRPFSYGL 189

[Close]

BLAST of Spg000057 vs. TAIR 10
Match: AT3G09200.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-08
Identity = 39/142 (27.46%), Postives = 68/142 (47.89%), Query Frame = 0


Query: 301 LFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYDY 360
           +  G N +M+ S+   + +     +  +  LLQGN GL FT    +EV     +Y     
Sbjct: 53  VLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAP 112

Query: 361 ARTGSAATEKVELKEGPLEQFSHEMEPS----LRKLGLPVRLNKGVVELVSDYVVCEEGK 420
           AR G  A   V ++ G     +  ++PS     + L +P ++NKG VE+++   + ++G 
Sbjct: 113 ARVGLVAPIDVVVQPG-----NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGD 172

Query: 421 SLSPESAGILRALGIRMATFRL 439
            +    A +L  LGIR  ++ L
Sbjct: 173 KVGSSEAALLAKLGIRPFSYGL 189

[Close]

BLAST of Spg000057 vs. TAIR 10
Match: AT3G09200.2 (Ribosomal protein L10 family protein )

HSP 1 Score: 53.5 bits (127), Expect = 5.2e-07
Identity = 35/112 (31.25%), Postives = 56/112 (50.00%), Query Frame = 0


Query: 331 LLQGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSAATEKVELKEGPLEQFSHEMEPS-- 390
           LLQGN GL FT    +EV     +Y     AR G  A   V ++ G     +  ++PS  
Sbjct: 50  LLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPG-----NTGLDPSQT 109

Query: 391 --LRKLGLPVRLNKGVVELVSDYVVCEEGKSLSPESAGILRALGIRMATFRL 439
              + L +P ++NKG VE+++   + ++G  +    A +L  LGIR  ++ L
Sbjct: 110 SFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGL 156

The following BLAST results are available for this feature:

BLAST of Spg000057 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933518.1	2.1e-111	76.04	mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover...	[more]
XP_023529350.1	6.1e-111	75.69	mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_038902849.1	1.0e-110	76.04	mRNA turnover protein 4 homolog [Benincasa hispida]	[more]
XP_022969955.1	1.8e-110	75.69	mRNA turnover protein 4 homolog [Cucurbita maxima]	[more]
XP_022157470.1	5.8e-109	74.65	mRNA turnover protein 4 homolog [Momordica charantia]	[more]

BLAST of Spg000057 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FV84	3.1e-49	40.67	mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1	[more]
Q9UKD2	5.9e-48	39.93	mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2	[more]
Q9D0I8	1.0e-47	40.30	mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1	[more]
Q86HD3	4.1e-33	30.91	Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 ...	[more]
Q7S302	9.4e-30	29.69	Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-...	[more]

BLAST of Spg000057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4Z2	1.0e-111	76.04	Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3...	[more]
A0A6J1I1E2	8.7e-111	75.69	Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 S...	[more]
A0A6J1DT71	2.8e-109	74.65	Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=...	[more]
A0A6P4AGB2	4.8e-93	63.89	Ribosome assembly factor mrt4 OS=Ziziphus jujuba OX=326968 GN=LOC107427781 PE=3 ...	[more]
A0A498JEA3	1.2e-91	62.37	Ribosome assembly factor mrt4 OS=Malus domestica OX=3750 GN=DVH24_033280 PE=3 SV...	[more]

BLAST of Spg000057 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25260.1	2.7e-80	54.42	Ribosomal protein L10 family protein	[more]
AT3G11250.1	2.7e-08	27.46	Ribosomal protein L10 family protein	[more]
AT3G09200.1	3.6e-08	27.46	Ribosomal protein L10 family protein	[more]
AT3G09200.2	5.2e-07	31.25	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040637	60S ribosomal protein L10P, insertion domain	PFAM	PF17777	RL10P_insert	coord: 361..431 e-value: 4.0E-23 score: 81.2
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 299..445 e-value: 4.6E-54 score: 184.8
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 186..260 e-value: 3.3E-7 score: 32.3
IPR043141	Ribosomal protein L10-like domain superfamily	SUPERFAMILY	160369	Ribosomal protein L10-like	coord: 196..250
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 195..239 e-value: 2.2E-7 score: 30.9
IPR043164	50S ribosomal protein L10, insertion domain superfamily	GENE3D	3.90.105.20		coord: 360..433 e-value: 4.6E-54 score: 184.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..138
None	No IPR available	PANTHER	PTHR45841	MRNA TURNOVER PROTEIN 4 MRTO4	coord: 291..463
None	No IPR available	PANTHER	PTHR45841:SF4	RIBOSOME ASSEMBLY FACTOR MRT4	coord: 291..463
None	No IPR available	PANTHER	PTHR45841:SF4	RIBOSOME ASSEMBLY FACTOR MRT4	coord: 177..241
None	No IPR available	PANTHER	PTHR45841	MRNA TURNOVER PROTEIN 4 MRTO4	coord: 177..241
IPR033867	Ribosome assembly factor Mrt4	CDD	cd05796	Ribosomal_P0_like	coord: 197..419 e-value: 1.30553E-79 score: 242.484

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000057.1	Spg000057.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor