Sgr028558 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr028558
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	B3 domain-containing protein REM16-like
Location	tig00153204: 2279744 .. 2279980 (-)
RNA-Seq Expression	Sgr028558
Synteny	Sgr028558

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACCAAATTCAATTTTACCCAAGTCGTCAATGCGGTGGTCTTACAAGTGGATGGAAACATTTTTCTGTAGATAACAATTTAGAAGAATTTGACGTCTGCGTCTTTGAGCCTGTCGCTAGAACAAGTGGTCCTGTGGTCCTGGAGGTCAAAATCTTTCGCGTTGTTGAAGATGTTATACCTCTGACTCGCGTGTCATCAAAGAGCAACCGGAAGCTAATCAAAGCCACCTGA

mRNA sequence

ATGGCCGACCAAATTCAATTTTACCCAAGTCGTCAATGCGGTGGTCTTACAAGTGGATGGAAACATTTTTCTGTAGATAACAATTTAGAAGAATTTGACGTCTGCGTCTTTGAGCCTGTCGCTAGAACAAGTGGTCCTGTGGTCCTGGAGGTCAAAATCTTTCGCGTTGTTGAAGATGTTATACCTCTGACTCGCGTGTCATCAAAGAGCAACCGGAAGCTAATCAAAGCCACCTGA

Coding sequence (CDS)

ATGGCCGACCAAATTCAATTTTACCCAAGTCGTCAATGCGGTGGTCTTACAAGTGGATGGAAACATTTTTCTGTAGATAACAATTTAGAAGAATTTGACGTCTGCGTCTTTGAGCCTGTCGCTAGAACAAGTGGTCCTGTGGTCCTGGAGGTCAAAATCTTTCGCGTTGTTGAAGATGTTATACCTCTGACTCGCGTGTCATCAAAGAGCAACCGGAAGCTAATCAAAGCCACCTGA

Protein sequence

MADQIQFYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFRVVEDVIPLTRVSSKSNRKLIKAT

Homology

[Close]

BLAST of Sgr028558 vs. NCBI nr
Match: XP_038884973.1 (B3 domain-containing protein REM16-like [Benincasa hispida])

HSP 1 Score: 138.7 bits (348), Expect = 2.2e-29
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 4   QIQFYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFRVVEDVIPL 63
           +  F PSRQCGGLTSGWKHFS+DNNLEEFDVCVFEPV ++SGPVVLEVKIFRVVEDVIPL
Sbjct: 319 KFNFTPSRQCGGLTSGWKHFSIDNNLEEFDVCVFEPVTKSSGPVVLEVKIFRVVEDVIPL 378

Query: 64  TRVSSKSNRKLIKA 78
           TRV+SKSNRKLIKA
Sbjct: 379 TRVASKSNRKLIKA 392

[Close]

BLAST of Sgr028558 vs. NCBI nr
Match: XP_023538425.1 (B3 domain-containing protein REM16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.4 bits (337), Expect = 4.2e-28
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 4   QIQFYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFRVVEDVIPL 63
           +  F  SRQCGGLTSGWKHF++DNNLEEFDVCVFEPV +TSGPVVLEV+IFRVVEDVIPL
Sbjct: 320 KFSFTASRQCGGLTSGWKHFAIDNNLEEFDVCVFEPVPKTSGPVVLEVRIFRVVEDVIPL 379

Query: 64  TRVSSKSNRKLIKA 78
           TRVS+KSNRKLIKA
Sbjct: 380 TRVSAKSNRKLIKA 393

[Close]

BLAST of Sgr028558 vs. NCBI nr
Match: XP_022951820.1 (B3 domain-containing protein REM16-like [Cucurbita moschata] >XP_022951821.1 B3 domain-containing protein REM16-like [Cucurbita moschata])

HSP 1 Score: 133.7 bits (335), Expect = 7.1e-28
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 4   QIQFYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFRVVEDVIPL 63
           +  F  SRQCGGLTSGWKHF++DNNLEEFDVCVFEPV  TSGPVVLEVKIFRVVEDVIPL
Sbjct: 320 KFNFTASRQCGGLTSGWKHFAIDNNLEEFDVCVFEPVPITSGPVVLEVKIFRVVEDVIPL 379

Query: 64  TRVSSKSNRKLIKA 78
           TRVS+KSNRKLIKA
Sbjct: 380 TRVSAKSNRKLIKA 393

[Close]

BLAST of Sgr028558 vs. NCBI nr
Match: XP_023002000.1 (B3 domain-containing protein REM16-like [Cucurbita maxima] >XP_023002001.1 B3 domain-containing protein REM16-like [Cucurbita maxima])

HSP 1 Score: 133.7 bits (335), Expect = 7.1e-28
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 4   QIQFYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFRVVEDVIPL 63
           +  F  SRQCGGLTSGWKHF++DNNLEEFDVCVFEPV +TSGPVVLEVKIFRVVEDVIPL
Sbjct: 320 KFSFTASRQCGGLTSGWKHFAIDNNLEEFDVCVFEPVPKTSGPVVLEVKIFRVVEDVIPL 379

Query: 64  TRVSSKSNRKLIKA 78
           TRVS+K NRKLIKA
Sbjct: 380 TRVSAKCNRKLIKA 393

[Close]

BLAST of Sgr028558 vs. NCBI nr
Match: KAA0065273.1 (B3 domain-containing protein REM16-like [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 9.3e-28
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 4   QIQFYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFRVVEDVIPL 63
           +  F PSRQCGGLTSGWKHFS+DNNLEEFDVCVFEPV ++SGPVVLEVKIFRVVEDVIPL
Sbjct: 352 KFNFTPSRQCGGLTSGWKHFSIDNNLEEFDVCVFEPVNKSSGPVVLEVKIFRVVEDVIPL 411

Query: 64  TRVSSKSNRKLIKA 78
           TRV+SKSNRK  KA
Sbjct: 412 TRVASKSNRKPTKA 425

[Close]

BLAST of Sgr028558 vs. ExPASy Swiss-Prot
Match: Q8RYD1 (B3 domain-containing protein REM16 OS=Arabidopsis thaliana OX=3702 GN=REM16 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 4   QIQFYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFR 56
           +   + +R  GG+++GWK F  DNNL E DVCVFEP    + P+ L V IFR
Sbjct: 268 KFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFR 319

[Close]

BLAST of Sgr028558 vs. ExPASy Swiss-Prot
Match: Q2R9D2 (B3 domain-containing protein Os11g0197600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0197600 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-07
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 7   FYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFRVVEDVIP 63
           +Y  R  G  + GW  F+V NNLE+FDVCVFE V + +    ++V I+RVV ++ P
Sbjct: 347 YYSDRSVGSFSGGWGKFAVGNNLEKFDVCVFELVQKDN----IKVHIYRVVPEITP 398

[Close]

BLAST of Sgr028558 vs. ExPASy TrEMBL
Match: A0A6J1KK65 (B3 domain-containing protein REM16-like OS=Cucurbita maxima OX=3661 GN=LOC111496014 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.4e-28
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 4   QIQFYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFRVVEDVIPL 63
           +  F  SRQCGGLTSGWKHF++DNNLEEFDVCVFEPV +TSGPVVLEVKIFRVVEDVIPL
Sbjct: 320 KFSFTASRQCGGLTSGWKHFAIDNNLEEFDVCVFEPVPKTSGPVVLEVKIFRVVEDVIPL 379

Query: 64  TRVSSKSNRKLIKA 78
           TRVS+K NRKLIKA
Sbjct: 380 TRVSAKCNRKLIKA 393

[Close]

BLAST of Sgr028558 vs. ExPASy TrEMBL
Match: A0A6J1GIJ8 (B3 domain-containing protein REM16-like OS=Cucurbita moschata OX=3662 GN=LOC111454553 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.4e-28
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 4   QIQFYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFRVVEDVIPL 63
           +  F  SRQCGGLTSGWKHF++DNNLEEFDVCVFEPV  TSGPVVLEVKIFRVVEDVIPL
Sbjct: 320 KFNFTASRQCGGLTSGWKHFAIDNNLEEFDVCVFEPVPITSGPVVLEVKIFRVVEDVIPL 379

Query: 64  TRVSSKSNRKLIKA 78
           TRVS+KSNRKLIKA
Sbjct: 380 TRVSAKSNRKLIKA 393

[Close]

BLAST of Sgr028558 vs. ExPASy TrEMBL
Match: A0A5A7VAS9 (B3 domain-containing protein REM16-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G006150 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.5e-28
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 4   QIQFYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFRVVEDVIPL 63
           +  F PSRQCGGLTSGWKHFS+DNNLEEFDVCVFEPV ++SGPVVLEVKIFRVVEDVIPL
Sbjct: 352 KFNFTPSRQCGGLTSGWKHFSIDNNLEEFDVCVFEPVNKSSGPVVLEVKIFRVVEDVIPL 411

Query: 64  TRVSSKSNRKLIKA 78
           TRV+SKSNRK  KA
Sbjct: 412 TRVASKSNRKPTKA 425

[Close]

BLAST of Sgr028558 vs. ExPASy TrEMBL
Match: A0A1S3BAT7 (B3 domain-containing protein REM16-like OS=Cucumis melo OX=3656 GN=LOC103487931 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.5e-28
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 4   QIQFYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFRVVEDVIPL 63
           +  F PSRQCGGLTSGWKHFS+DNNLEEFDVCVFEPV ++SGPVVLEVKIFRVVEDVIPL
Sbjct: 319 KFNFTPSRQCGGLTSGWKHFSIDNNLEEFDVCVFEPVNKSSGPVVLEVKIFRVVEDVIPL 378

Query: 64  TRVSSKSNRKLIKA 78
           TRV+SKSNRK  KA
Sbjct: 379 TRVASKSNRKPTKA 392

[Close]

BLAST of Sgr028558 vs. ExPASy TrEMBL
Match: A0A0A0LRE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360730 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 4   QIQFYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFRVVEDVIPL 63
           +  F PSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPV ++SGPVVLEVKIFRVVEDVIPL
Sbjct: 319 KFNFTPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVNKSSGPVVLEVKIFRVVEDVIPL 378

Query: 64  TRVSSKSNRKLIKA 78
           TRV+SK NRK  KA
Sbjct: 379 TRVASKGNRKPTKA 392

[Close]

BLAST of Sgr028558 vs. TAIR 10
Match: AT4G33280.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-08
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 4   QIQFYPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVARTSGPVVLEVKIFR 56
           +   + +R  GG+++GWK F  DNNL E DVCVFEP    + P+ L V IFR
Sbjct: 268 KFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFR 319

The following BLAST results are available for this feature:

BLAST of Sgr028558 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884973.1	2.2e-29	87.84	B3 domain-containing protein REM16-like [Benincasa hispida]	[more]
XP_023538425.1	4.2e-28	85.14	B3 domain-containing protein REM16-like [Cucurbita pepo subsp. pepo]	[more]
XP_022951820.1	7.1e-28	86.49	B3 domain-containing protein REM16-like [Cucurbita moschata] >XP_022951821.1 B3 ...	[more]
XP_023002000.1	7.1e-28	85.14	B3 domain-containing protein REM16-like [Cucurbita maxima] >XP_023002001.1 B3 do...	[more]
KAA0065273.1	9.3e-28	85.14	B3 domain-containing protein REM16-like [Cucumis melo var. makuwa]	[more]

BLAST of Sgr028558 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RYD1	1.4e-07	48.08	B3 domain-containing protein REM16 OS=Arabidopsis thaliana OX=3702 GN=REM16 PE=2...	[more]
Q2R9D2	2.5e-07	44.64	B3 domain-containing protein Os11g0197600 OS=Oryza sativa subsp. japonica OX=399...	[more]

BLAST of Sgr028558 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KK65	3.4e-28	85.14	B3 domain-containing protein REM16-like OS=Cucurbita maxima OX=3661 GN=LOC111496...	[more]
A0A6J1GIJ8	3.4e-28	86.49	B3 domain-containing protein REM16-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A5A7VAS9	4.5e-28	85.14	B3 domain-containing protein REM16-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BAT7	4.5e-28	85.14	B3 domain-containing protein REM16-like OS=Cucumis melo OX=3656 GN=LOC103487931 ...	[more]
A0A0A0LRE7	1.0e-27	85.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360730 PE=4 SV=1	[more]

BLAST of Sgr028558 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33280.1	1.0e-08	48.08	AP2/B3-like transcriptional factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 4..60 e-value: 8.6E-12 score: 46.9
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 11..55
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 13..55 e-value: 2.8E-7 score: 30.3
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 1..57 score: 8.627947
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 4..55 e-value: 6.74626E-9 score: 46.1669
None	No IPR available	PANTHER	PTHR31391:SF2	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600	coord: 7..69
IPR044837	B3 domain-containing protein REM16-like	PANTHER	PTHR31391	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	coord: 7..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr028558.1	Sgr028558.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding