Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTACAAATACAAGTCTCCTCCTCCACCACCACCATACAAGAAGCCATATCACCCACCTACGCCAATTTACAAGTACAAATCTCCACCCCCACCAGTTTACAAGTACAAGTCTCCTCCTCCTCCACCACCCTACAAGAAGCCATACCACCCACCAACACCCATCTACAAGTACAAATCTCCACCACCACCTCCACCAGTGTACAAATATAAATCACCTCCTCCACCACCACCCTACAAGAAACCATACCACCCACCTTACCACTACAAATCCCCACCGCCTCCTCCACCACCCTACAAGAAGCCATACCACCCACCATACCACTACAAGTCTCCACCACCGCCACCACCCATTAGACCCTACCACCCACCTCCAACCCCCGGGAAGCCGTACCACCCACCTCCAACCCCTGGGAAGCCGTACCACCCACCTCCAACCCCTGGGAAGCCGTACCACCCACCTCCCGTCTACCACTACAAGTCTCCACCACCGCCGCCGGTTTACATCTACGCATCCCCTCCTCCACCTCCTCACTACTAGACAACTAGCTTTGCCAAG
mRNA sequence
TCTACAAATACAAGTCTCCTCCTCCACCACCACCATACAAGAAGCCATATCACCCACCTACGCCAATTTACAAGTACAAATCTCCACCCCCACCAGTTTACAAGTACAAGTCTCCTCCTCCTCCACCACCCTACAAGAAGCCATACCACCCACCAACACCCATCTACAAGTACAAATCTCCACCACCACCTCCACCAGTGTACAAATATAAATCACCTCCTCCACCACCACCCTACAAGAAACCATACCACCCACCTTACCACTACAAATCCCCACCGCCTCCTCCACCACCCTACAAGAAGCCATACCACCCACCATACCACTACAAGTCTCCACCACCGCCACCACCCATTAGACCCTACCACCCACCTCCAACCCCCGGGAAGCCGTACCACCCACCTCCAACCCCTGGGAAGCCGTACCACCCACCTCCAACCCCTGGGAAGCCGTACCACCCACCTCCCGTCTACCACTACAAGTCTCCACCACCGCCGCCGGTTTACATCTACGCATCCCCTCCTCCACCTCCTCACTACTAGACAACTAGCTTTGCCAAG
Coding sequence (CDS)
TCTACAAATACAAGTCTCCTCCTCCACCACCACCATACAAGAAGCCATATCACCCACCTACGCCAATTTACAAGTACAAATCTCCACCCCCACCAGTTTACAAGTACAAGTCTCCTCCTCCTCCACCACCCTACAAGAAGCCATACCACCCACCAACACCCATCTACAAGTACAAATCTCCACCACCACCTCCACCAGTGTACAAATATAAATCACCTCCTCCACCACCACCCTACAAGAAACCATACCACCCACCTTACCACTACAAATCCCCACCGCCTCCTCCACCACCCTACAAGAAGCCATACCACCCACCATACCACTACAAGTCTCCACCACCGCCACCACCCATTAGACCCTACCACCCACCTCCAACCCCCGGGAAGCCGTACCACCCACCTCCAACCCCTGGGAAGCCGTACCACCCACCTCCAACCCCTGGGAAGCCGTACCACCCACCTCCCGTCTACCACTACAAGTCTCCACCACCGCCGCCGGTTTACATCTACGCATCCCCTCCTCCACCTCCTCACTACTAGACAACTAGCTTTGCCAAG
Protein sequence
STNTSLLLHHHHTRSHITHLRQFTSTNLHPHQFTSTSLLLLHHPTRSHTTHQHPSTSTNLHHHLHQCTNINHLLHHHPTRNHTTHLTTTNPHRLLHHPTRSHTTHHTTTSLHHRHHPLDPTTHLQPPGSRTTHLQPLGSRTTHLQPLGSRTTHLPSTTTSLHHRRRFTSTHPLLHLLTTRQLALPX
Homology
BLAST of Sgr028318 vs. NCBI nr
Match:
KAF3856996.1 (hypothetical protein F7725_008855 [Dissostichus mawsoni])
HSP 1 Score: 60.5 bits (145), Expect = 1.8e-05
Identity = 57/154 (37.01%), Postives = 66/154 (42.86%), Query Frame = 0
Query: 1 STNTSLLLHHHHTRSHITHLRQFTSTNLHPHQFTSTSLLLLHHPTRSHTTHQHPSTSTNL 60
S++T H H T SH TH+ S H H S HPT SH TH HP+
Sbjct: 419 SSHTHSSTHSHPTHSHPTHIHPTHSHPTHSHPTHS-------HPTHSHPTHSHPT----- 478
Query: 61 HHHLHQCTNINHLLHHHPTRNHTTHLTTTNPHRLLHHPTRSHTTHHTTTSLHHRH-HPLD 120
H+H +H H HPT +H TH+ T+ H HPT SH TH T H H HP
Sbjct: 479 --HIH--PTHSHPTHSHPTHSHPTHIHPTHSHPTHTHPTHSHPTHSHPTHSHPTHIHPTH 538
Query: 121 PTTHLQPPGSRTTHLQPLGSRTTHLQPLGSRTTH 154
H P TH P S TH P TH
Sbjct: 539 SHPHTLIPHIHPTHTHPTPSHPTHFHPTHFHPTH 556
BLAST of Sgr028318 vs. NCBI nr
Match:
XP_034906264.1 (extensin-2-like [Populus alba])
HSP 1 Score: 58.5 bits (140), Expect = 6.9e-05
Identity = 65/160 (40.62%), Postives = 72/160 (45.00%), Query Frame = 0
Query: 2 TNTSLLLHHHHTRSHITHLRQFTSTNLHPHQFTSTSLLLLHHPTRSHTTHQHPSTSTNLH 61
T TS LLHHHH H+T + H H T+TS L HH H T LH
Sbjct: 865 TTTSHLLHHHHLLHHLTITSHRPHHHHHHHHHTTTSHPLHHHHLLLHPTTTSLPHHPLLH 924
Query: 62 HHLHQCTNINHLLHHHPTRNHTTHLTTTNPHRLLHHPTRSHTTHHTTTSLHHRHHPLDPT 121
HHLH T++ HL HH H TTTNPH HH HTT T LHH HH L T
Sbjct: 925 HHLHTTTSLPHLPHH-----LLHHPTTTNPHLPPHHLLHPHTT--TNPLLHHPHHLLHLT 984
Query: 122 T------HLQPPGSRTTHLQPLGSRTTHLQPLGSRTTHLP 156
T HL PP + L HL P + T HLP
Sbjct: 985 TTSLLLHHLHPPLLHMSTSPHLPLHHHHLLP--TTTIHLP 1015
BLAST of Sgr028318 vs. NCBI nr
Match:
PHT32987.1 (hypothetical protein CQW23_29324 [Capsicum baccatum])
HSP 1 Score: 57.0 bits (136), Expect = 2.0e-04
Identity = 78/201 (38.81%), Postives = 90/201 (44.78%), Query Frame = 0
Query: 2 TNTSLLLHHHHTRSHITHLRQFTSTNLHPHQFTSTSLLLLHHPTRSHTTHQHPSTSTNLH 61
T T+ LLHHH HL + T++ L H T++ LLHH H H H T+ NLH
Sbjct: 59 TTTNHLLHHHR-----HHLHRITTSLLLHHHLHHTTINLLHH----HHRHLHHLTTINLH 118
Query: 62 -----HHLHQCTNI------NHLLHH------HPTRNHTTHLTTTNPHRLLHHPTRSHTT 121
HHLH T +HLLHH H RNH HL TT LHHP RS
Sbjct: 119 LPLSRHHLHLTTTALHPHPRSHLLHHIITPRRHHQRNHPLHLITTP----LHHPQRSLLL 178
Query: 122 HHTTTSLHHRHHPLDPTTHLQPPGSRTTHLQPLGSRTTHLQPLGSRTTHLPSTTTSLHHR 181
H TTT+LHHR R +HL P + L G+ H TT LHHR
Sbjct: 179 HLTTTTLHHR---------------RLSHL-PHHTTIALLHHQGNHLLH--RITTLLHHR 224
Query: 182 RRFTSTHPLLHLLTTRQLALP 186
R LLHL TT L P
Sbjct: 239 R----LSHLLHLTTTTLLHHP 224
BLAST of Sgr028318 vs. ExPASy TrEMBL
Match:
A0A803QV72 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 3.6e-07
Identity = 86/204 (42.16%), Postives = 110/204 (53.92%), Query Frame = 0
Query: 4 TSLLLHHHHTRSHITHLRQFTSTNL--HPHQFTSTSLLLLHHPTRSHTT----HQHPSTS 63
TS LHHH RSH TH Q+TST+L HP Q+TSTS LLHHP + +T H T+
Sbjct: 278 TSTNLHHHQLRSHTTHPPQYTSTSLLHHPPQYTSTS--LLHHPPQCTSTSLLHHPPQCTN 337
Query: 64 TNLHHHLHQCTNINHLLHHHPTRNHTTHL------TTTNPHRLLHHPTRSHTTHHTTTSL 123
T+L HH QCTN + LLHH P +T+ L T TNPH HHP + T++
Sbjct: 338 TSLLHHPLQCTNTS-LLHHPPQCTNTSLLHHPPQCTNTNPH---HHPLQ------FTSTS 397
Query: 124 HHRHHPLDPTTHLQPPGSRTTH--LQPLGSRTTH--LQPLGSRTTH---LPSTTTSLHHR 183
HH H P +T+L TTH LQ + TTH LQ + TT +P T +S+ +
Sbjct: 398 HHHHQPQCTSTNLP-----TTHSSLQVQITTTTHPSLQIQITTTTSQEAIPPTHSSVQVQ 457
Query: 184 RRFTSTHPLLHL---LTTRQLALP 186
T+THP L + TT Q A+P
Sbjct: 458 IT-TTTHPSLQIQVTTTTSQEAIP 463
BLAST of Sgr028318 vs. ExPASy TrEMBL
Match:
A0A803QV74 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 3.6e-07
Identity = 86/204 (42.16%), Postives = 110/204 (53.92%), Query Frame = 0
Query: 4 TSLLLHHHHTRSHITHLRQFTSTNL--HPHQFTSTSLLLLHHPTRSHTT----HQHPSTS 63
TS LHHH RSH TH Q+TST+L HP Q+TSTS LLHHP + +T H T+
Sbjct: 278 TSTNLHHHQLRSHTTHPPQYTSTSLLHHPPQYTSTS--LLHHPPQCTSTSLLHHPPQCTN 337
Query: 64 TNLHHHLHQCTNINHLLHHHPTRNHTTHL------TTTNPHRLLHHPTRSHTTHHTTTSL 123
T+L HH QCTN + LLHH P +T+ L T TNPH HHP + T++
Sbjct: 338 TSLLHHPLQCTNTS-LLHHPPQCTNTSLLHHPPQCTNTNPH---HHPLQ------FTSTS 397
Query: 124 HHRHHPLDPTTHLQPPGSRTTH--LQPLGSRTTH--LQPLGSRTTH---LPSTTTSLHHR 183
HH H P +T+L TTH LQ + TTH LQ + TT +P T +S+ +
Sbjct: 398 HHHHQPQCTSTNLP-----TTHSSLQVQITTTTHPSLQIQITTTTSQEAIPPTHSSVQVQ 457
Query: 184 RRFTSTHPLLHL---LTTRQLALP 186
T+THP L + TT Q A+P
Sbjct: 458 IT-TTTHPSLQIQVTTTTSQEAIP 463
BLAST of Sgr028318 vs. ExPASy TrEMBL
Match:
A0A803QV71 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 3.6e-07
Identity = 86/204 (42.16%), Postives = 110/204 (53.92%), Query Frame = 0
Query: 4 TSLLLHHHHTRSHITHLRQFTSTNL--HPHQFTSTSLLLLHHPTRSHTT----HQHPSTS 63
TS LHHH RSH TH Q+TST+L HP Q+TSTS LLHHP + +T H T+
Sbjct: 278 TSTNLHHHQLRSHTTHPPQYTSTSLLHHPPQYTSTS--LLHHPPQCTSTSLLHHPPQCTN 337
Query: 64 TNLHHHLHQCTNINHLLHHHPTRNHTTHL------TTTNPHRLLHHPTRSHTTHHTTTSL 123
T+L HH QCTN + LLHH P +T+ L T TNPH HHP + T++
Sbjct: 338 TSLLHHPLQCTNTS-LLHHPPQCTNTSLLHHPPQCTNTNPH---HHPLQ------FTSTS 397
Query: 124 HHRHHPLDPTTHLQPPGSRTTH--LQPLGSRTTH--LQPLGSRTTH---LPSTTTSLHHR 183
HH H P +T+L TTH LQ + TTH LQ + TT +P T +S+ +
Sbjct: 398 HHHHQPQCTSTNLP-----TTHSSLQVQITTTTHPSLQIQITTTTSQEAIPPTHSSVQVQ 457
Query: 184 RRFTSTHPLLHL---LTTRQLALP 186
T+THP L + TT Q A+P
Sbjct: 458 IT-TTTHPSLQIQVTTTTSQEAIP 463
BLAST of Sgr028318 vs. ExPASy TrEMBL
Match:
A0A803QV73 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 3.6e-07
Identity = 86/204 (42.16%), Postives = 110/204 (53.92%), Query Frame = 0
Query: 4 TSLLLHHHHTRSHITHLRQFTSTNL--HPHQFTSTSLLLLHHPTRSHTT----HQHPSTS 63
TS LHHH RSH TH Q+TST+L HP Q+TSTS LLHHP + +T H T+
Sbjct: 278 TSTNLHHHQLRSHTTHPPQYTSTSLLHHPPQYTSTS--LLHHPPQCTSTSLLHHPPQCTN 337
Query: 64 TNLHHHLHQCTNINHLLHHHPTRNHTTHL------TTTNPHRLLHHPTRSHTTHHTTTSL 123
T+L HH QCTN + LLHH P +T+ L T TNPH HHP + T++
Sbjct: 338 TSLLHHPLQCTNTS-LLHHPPQCTNTSLLHHPPQCTNTNPH---HHPLQ------FTSTS 397
Query: 124 HHRHHPLDPTTHLQPPGSRTTH--LQPLGSRTTH--LQPLGSRTTH---LPSTTTSLHHR 183
HH H P +T+L TTH LQ + TTH LQ + TT +P T +S+ +
Sbjct: 398 HHHHQPQCTSTNLP-----TTHSSLQVQITTTTHPSLQIQITTTTSQEAIPPTHSSVQVQ 457
Query: 184 RRFTSTHPLLHL---LTTRQLALP 186
T+THP L + TT Q A+P
Sbjct: 458 IT-TTTHPSLQIQVTTTTSQEAIP 463
BLAST of Sgr028318 vs. ExPASy TrEMBL
Match:
A0A803QV75 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 3.6e-07
Identity = 86/204 (42.16%), Postives = 110/204 (53.92%), Query Frame = 0
Query: 4 TSLLLHHHHTRSHITHLRQFTSTNL--HPHQFTSTSLLLLHHPTRSHTT----HQHPSTS 63
TS LHHH RSH TH Q+TST+L HP Q+TSTS LLHHP + +T H T+
Sbjct: 278 TSTNLHHHQLRSHTTHPPQYTSTSLLHHPPQYTSTS--LLHHPPQCTSTSLLHHPPQCTN 337
Query: 64 TNLHHHLHQCTNINHLLHHHPTRNHTTHL------TTTNPHRLLHHPTRSHTTHHTTTSL 123
T+L HH QCTN + LLHH P +T+ L T TNPH HHP + T++
Sbjct: 338 TSLLHHPLQCTNTS-LLHHPPQCTNTSLLHHPPQCTNTNPH---HHPLQ------FTSTS 397
Query: 124 HHRHHPLDPTTHLQPPGSRTTH--LQPLGSRTTH--LQPLGSRTTH---LPSTTTSLHHR 183
HH H P +T+L TTH LQ + TTH LQ + TT +P T +S+ +
Sbjct: 398 HHHHQPQCTSTNLP-----TTHSSLQVQITTTTHPSLQIQITTTTSQEAIPPTHSSVQVQ 457
Query: 184 RRFTSTHPLLHL---LTTRQLALP 186
T+THP L + TT Q A+P
Sbjct: 458 IT-TTTHPSLQIQVTTTTSQEAIP 463
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A803QV72 | 3.6e-07 | 42.16 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803QV74 | 3.6e-07 | 42.16 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803QV71 | 3.6e-07 | 42.16 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803QV73 | 3.6e-07 | 42.16 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803QV75 | 3.6e-07 | 42.16 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |