Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGCAATAAAACCCATTCAAGAGGCAGGGTGGCTTTCTCGTGGGAGAAAAAGCCAGGGGTGTGTAAATCAATAGCAATGGCGCAGCCGCACAGCCGGTGCGATGATGATGATCCGACGCAGAAGCTGCGCCCTCCGCCGTGTCCTTTGTCGGAAAACCGCGCCATGACTCCACAGGCTGCCCCTCTGCCTGACCAGCGGCAGCCGCCCTCTTCGAGAAAAGGCAACAGAAGGCTGCAAAACGATGGCCATGTTGAAGACCCTTTTCTTGCGGCCTACAGAGAGTGCACCGGAGAGATTAATAATAAGGCCAAAAATCAATCTGCCTTCGGAGCCTGGAGAAACGTGTTTGGTTCTCTGTCTTGCAAGCACGTGACGGCGGTTCGAGATGATAGCTTGATCAGTTCCCCAGTTTCCAAACGAACCCTGTAG
mRNA sequence
ATGGCCAGCAATAAAACCCATTCAAGAGGCAGGGTGGCTTTCTCGTGGGAGAAAAAGCCAGGGGTGTGTAAATCAATAGCAATGGCGCAGCCGCACAGCCGGTGCGATGATGATGATCCGACGCAGAAGCTGCGCCCTCCGCCGTGTCCTTTGTCGGAAAACCGCGCCATGACTCCACAGGCTGCCCCTCTGCCTGACCAGCGGCAGCCGCCCTCTTCGAGAAAAGGCAACAGAAGGCTGCAAAACGATGGCCATGTTGAAGACCCTTTTCTTGCGGCCTACAGAGAGTGCACCGGAGAGATTAATAATAAGGCCAAAAATCAATCTGCCTTCGGAGCCTGGAGAAACGTGTTTGGTTCTCTGTCTTGCAAGCACGTGACGGCGGTTCGAGATGATAGCTTGATCAGTTCCCCAGTTTCCAAACGAACCCTGTAG
Coding sequence (CDS)
ATGGCCAGCAATAAAACCCATTCAAGAGGCAGGGTGGCTTTCTCGTGGGAGAAAAAGCCAGGGGTGTGTAAATCAATAGCAATGGCGCAGCCGCACAGCCGGTGCGATGATGATGATCCGACGCAGAAGCTGCGCCCTCCGCCGTGTCCTTTGTCGGAAAACCGCGCCATGACTCCACAGGCTGCCCCTCTGCCTGACCAGCGGCAGCCGCCCTCTTCGAGAAAAGGCAACAGAAGGCTGCAAAACGATGGCCATGTTGAAGACCCTTTTCTTGCGGCCTACAGAGAGTGCACCGGAGAGATTAATAATAAGGCCAAAAATCAATCTGCCTTCGGAGCCTGGAGAAACGTGTTTGGTTCTCTGTCTTGCAAGCACGTGACGGCGGTTCGAGATGATAGCTTGATCAGTTCCCCAGTTTCCAAACGAACCCTGTAG
Protein sequence
MASNKTHSRGRVAFSWEKKPGVCKSIAMAQPHSRCDDDDPTQKLRPPPCPLSENRAMTPQAAPLPDQRQPPSSRKGNRRLQNDGHVEDPFLAAYRECTGEINNKAKNQSAFGAWRNVFGSLSCKHVTAVRDDSLISSPVSKRTL
Homology
BLAST of Sgr027777 vs. NCBI nr
Match:
KAA0064468.1 (hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK20120.1 hypothetical protein E5676_scaffold134G002450 [Cucumis melo var. makuwa])
HSP 1 Score: 144.4 bits (363), Expect = 7.4e-31
Identity = 87/152 (57.24%), Postives = 102/152 (67.11%), Query Frame = 0
Query: 3 SNKTHSRGRVAFSWEKKPGVCKSIAMAQPHSRCD--DDDP-TQKLRPPPCPLSENRAMTP 62
+NKTHSRGRVAFSWE +PGVCK+ A+A P+ CD DDDP +KL+PPPC TP
Sbjct: 4 NNKTHSRGRVAFSWENRPGVCKA-AVAPPNRFCDDNDDDPLKKKLQPPPC--------TP 63
Query: 63 QAAPLPDQRQPPSSRKGNRR-LQNDGHVEDPFLAAYRECTGEINNK----AKNQSAFGAW 122
+RKGN++ LQ DG EDPFLAAYRECT E + K KN+ FG W
Sbjct: 64 -------------ARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGW 123
Query: 123 --RNVFGSLSCKHVTAVRDDSLISSPVSKRTL 145
N FG+LSCK +TAVRDDSLISSPVSKRT+
Sbjct: 124 MTMNFFGNLSCKQLTAVRDDSLISSPVSKRTV 133
BLAST of Sgr027777 vs. NCBI nr
Match:
KAE8649893.1 (hypothetical protein Csa_012691 [Cucumis sativus])
HSP 1 Score: 106.3 bits (264), Expect = 2.2e-19
Identity = 58/103 (56.31%), Postives = 68/103 (66.02%), Query Frame = 0
Query: 3 SNKTHSRGRVAFSWEKKPGVCKSIAMAQPHSRCDDDDPTQK-LRPPPCPLSENRAMTPQA 62
+NKTHSRGRVAFSWE KPGVCK+ A+A PH CD DDP +K L+PPPC TP
Sbjct: 4 NNKTHSRGRVAFSWENKPGVCKA-AVAPPHGFCDGDDPLKKQLQPPPC--------TP-- 63
Query: 63 APLPDQRQPPSSRKGNRRLQNDGHVEDPFLAAYRECTGEINNK 105
+RKGN++LQ DG EDPFLAAY+ECT E + K
Sbjct: 64 -----------ARKGNKKLQKDGGAEDPFLAAYKECTSEDDEK 84
BLAST of Sgr027777 vs. NCBI nr
Match:
CBI19366.3 (unnamed protein product, partial [Vitis vinifera])
HSP 1 Score: 92.0 bits (227), Expect = 4.4e-15
Identity = 64/148 (43.24%), Postives = 83/148 (56.08%), Query Frame = 0
Query: 1 MASNKTHSRGRVAFSWEKKPGVCKSIAMAQPHSRCDDDDPTQ------KLRPPPCPLSEN 60
M +K HS+G V F+WE KPGVCK+ R D+D PT KL+PPPCPL +
Sbjct: 1 MNQSKIHSQGNVPFAWENKPGVCKA-------RRDDEDCPTDTGHFVIKLQPPPCPLEKG 60
Query: 61 R-AMTPQAAPLP--DQRQPP---SSRKGNRRLQNDGHVEDPFLAAYRECTGEINNKAKNQ 120
R ++ PLP + PP SS+KG+ R Q EDPFLAAY+ECT +
Sbjct: 61 RPSVHGSQIPLPPCTFQGPPSRNSSKKGHLRKQ-----EDPFLAAYKECTKNTRKGHDGK 120
Query: 121 SAFGAWRNVFGSLSCKHVTAVRDDSLIS 137
+ G R+ +LSCKH VRDD+L+S
Sbjct: 121 THLG--RSSMFNLSCKHSCNVRDDNLVS 134
BLAST of Sgr027777 vs. NCBI nr
Match:
KAG6591440.1 (Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 88.6 bits (218), Expect = 4.8e-14
Identity = 56/114 (49.12%), Postives = 67/114 (58.77%), Query Frame = 0
Query: 3 SNKTHSRGRVAFSWEKKPGVCKSIAMAQPHSRCDDDDPTQ-KLRPPPCPLSENRAMTPQA 62
SN+ HSRGRVAFSWE KPG CK+ A+A P R DDD Q KLRPPPC
Sbjct: 4 SNRAHSRGRVAFSWENKPGECKA-AVAPPFYRLGDDDLGQKKLRPPPC------------ 63
Query: 63 APLPDQRQPPSSRKGNRRLQNDGHVEDPFLAAYRECTG---EINNKAK-NQSAF 112
S+RKG +++Q DG EDPFLAA+REC+ E N K K N++ F
Sbjct: 64 ---------TSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 95
BLAST of Sgr027777 vs. NCBI nr
Match:
KAG7024319.1 (hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 88.6 bits (218), Expect = 4.8e-14
Identity = 56/114 (49.12%), Postives = 67/114 (58.77%), Query Frame = 0
Query: 3 SNKTHSRGRVAFSWEKKPGVCKSIAMAQPHSRCDDDDPTQ-KLRPPPCPLSENRAMTPQA 62
SN+ HSRGRVAFSWE KPG CK+ A+A P R DDD Q KLRPPPC
Sbjct: 4 SNRAHSRGRVAFSWENKPGECKA-AVAPPFYRLGDDDLGQKKLRPPPC------------ 63
Query: 63 APLPDQRQPPSSRKGNRRLQNDGHVEDPFLAAYRECTG---EINNKAK-NQSAF 112
S+RKG +++Q DG EDPFLAA+REC+ E N K K N++ F
Sbjct: 64 ---------TSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 95
BLAST of Sgr027777 vs. ExPASy TrEMBL
Match:
A0A0A0L2M9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1)
HSP 1 Score: 151.0 bits (380), Expect = 3.8e-33
Identity = 86/149 (57.72%), Postives = 100/149 (67.11%), Query Frame = 0
Query: 3 SNKTHSRGRVAFSWEKKPGVCKSIAMAQPHSRCDDDDPTQK-LRPPPCPLSENRAMTPQA 62
+NKTHSRGRVAFSWE KPGVCK+ A+A PH CD DDP +K L+PPPC TP
Sbjct: 4 NNKTHSRGRVAFSWENKPGVCKA-AVAPPHGFCDGDDPLKKQLQPPPC--------TP-- 63
Query: 63 APLPDQRQPPSSRKGNRRLQNDGHVEDPFLAAYRECTGEINNKA----KNQSAFGAW--R 122
+RKGN++LQ DG EDPFLAAY+ECT E + K KN+S FG W
Sbjct: 64 -----------ARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTT 123
Query: 123 NVFGSLSCKHVTAVRDDSLISSPVSKRTL 145
N F +LSCK +TAVRDDSLISSP SKRT+
Sbjct: 124 NFFCNLSCKQLTAVRDDSLISSPDSKRTV 130
BLAST of Sgr027777 vs. ExPASy TrEMBL
Match:
A0A5A7VA56 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002450 PE=4 SV=1)
HSP 1 Score: 144.4 bits (363), Expect = 3.6e-31
Identity = 87/152 (57.24%), Postives = 102/152 (67.11%), Query Frame = 0
Query: 3 SNKTHSRGRVAFSWEKKPGVCKSIAMAQPHSRCD--DDDP-TQKLRPPPCPLSENRAMTP 62
+NKTHSRGRVAFSWE +PGVCK+ A+A P+ CD DDDP +KL+PPPC TP
Sbjct: 4 NNKTHSRGRVAFSWENRPGVCKA-AVAPPNRFCDDNDDDPLKKKLQPPPC--------TP 63
Query: 63 QAAPLPDQRQPPSSRKGNRR-LQNDGHVEDPFLAAYRECTGEINNK----AKNQSAFGAW 122
+RKGN++ LQ DG EDPFLAAYRECT E + K KN+ FG W
Sbjct: 64 -------------ARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGW 123
Query: 123 --RNVFGSLSCKHVTAVRDDSLISSPVSKRTL 145
N FG+LSCK +TAVRDDSLISSPVSKRT+
Sbjct: 124 MTMNFFGNLSCKQLTAVRDDSLISSPVSKRTV 133
BLAST of Sgr027777 vs. ExPASy TrEMBL
Match:
E0CNY8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g08660 PE=4 SV=1)
HSP 1 Score: 92.0 bits (227), Expect = 2.1e-15
Identity = 64/148 (43.24%), Postives = 83/148 (56.08%), Query Frame = 0
Query: 1 MASNKTHSRGRVAFSWEKKPGVCKSIAMAQPHSRCDDDDPTQ------KLRPPPCPLSEN 60
M +K HS+G V F+WE KPGVCK+ R D+D PT KL+PPPCPL +
Sbjct: 1 MNQSKIHSQGNVPFAWENKPGVCKA-------RRDDEDCPTDTGHFVIKLQPPPCPLEKG 60
Query: 61 R-AMTPQAAPLP--DQRQPP---SSRKGNRRLQNDGHVEDPFLAAYRECTGEINNKAKNQ 120
R ++ PLP + PP SS+KG+ R Q EDPFLAAY+ECT +
Sbjct: 61 RPSVHGSQIPLPPCTFQGPPSRNSSKKGHLRKQ-----EDPFLAAYKECTKNTRKGHDGK 120
Query: 121 SAFGAWRNVFGSLSCKHVTAVRDDSLIS 137
+ G R+ +LSCKH VRDD+L+S
Sbjct: 121 THLG--RSSMFNLSCKHSCNVRDDNLVS 134
BLAST of Sgr027777 vs. ExPASy TrEMBL
Match:
A0A1R3HKK6 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1)
HSP 1 Score: 84.7 bits (208), Expect = 3.4e-13
Identity = 60/146 (41.10%), Postives = 73/146 (50.00%), Query Frame = 0
Query: 1 MASNKTHSRGRVAFSWEKKPGVCKSIAMAQPHSRCDDDDPTQKLRPPPCPLS------EN 60
M K HS+G V FSWE KPGVCK + +D QKL PPPCP N
Sbjct: 1 MNQTKVHSQGNVPFSWENKPGVCKMTS----QDCLKEDFFLQKLPPPPCPPETARVSISN 60
Query: 61 RAMTPQAAPLPDQRQPPSSRKGNRRLQNDGHVEDPFLAAYRECTGEIN--NKAKNQSAFG 120
+ P P QPPS R L+ +DPFLAAY+ECT N AKN + G
Sbjct: 61 SIQDNKIPPPPGAFQPPSRSSSRRGLKKS---DDPFLAAYKECTKSTNKGKLAKNVNGGG 120
Query: 121 AW---RNVFGSLSCKHVTAVRDDSLI 136
+ + VF S SCK +VRDD+L+
Sbjct: 121 SGNLKKGVF-SFSCKQSCSVRDDNLV 138
BLAST of Sgr027777 vs. ExPASy TrEMBL
Match:
A0A2K1XNQ7 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G013000 PE=4 SV=1)
HSP 1 Score: 81.3 bits (199), Expect = 3.7e-12
Identity = 53/139 (38.13%), Postives = 70/139 (50.36%), Query Frame = 0
Query: 1 MASNKTHSRGRVAFSWEKKPGVCKSIAMAQPHSRCDDDDPTQKLRPPPCPLSENRAMTPQ 60
M +K HS+G V FSWEKKPG K + H + KL+PPPCP+ +R T
Sbjct: 3 MKQSKIHSKGNVPFSWEKKPGESK---VTSHHDYLSRETSVVKLQPPPCPVESSRISTHD 62
Query: 61 -AAPLPD---QRQPPSSRKGNRRLQNDGHVEDPFLAAYRECTGEINNKAKNQSAFGAWRN 120
PLP Q R +RR +DPFLAAY+ECT + K+ + R
Sbjct: 63 IIIPLPPCTFQAPGAPLRSSSRRGLKKDIDDDPFLAAYKECTKKDKPVGKDFGSGRRKRA 122
Query: 121 VFGSLSCKHVTAVRDDSLI 136
+F SCK +VRDD+L+
Sbjct: 123 IFDFSSCKQSCSVRDDNLV 138
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0064468.1 | 7.4e-31 | 57.24 | hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK201... | [more] |
KAE8649893.1 | 2.2e-19 | 56.31 | hypothetical protein Csa_012691 [Cucumis sativus] | [more] |
CBI19366.3 | 4.4e-15 | 43.24 | unnamed protein product, partial [Vitis vinifera] | [more] |
KAG6591440.1 | 4.8e-14 | 49.12 | Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
KAG7024319.1 | 4.8e-14 | 49.12 | hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L2M9 | 3.8e-33 | 57.72 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1 | [more] |
A0A5A7VA56 | 3.6e-31 | 57.24 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
E0CNY8 | 2.1e-15 | 43.24 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g08660 PE=4 SV=... | [more] |
A0A1R3HKK6 | 3.4e-13 | 41.10 | Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1 | [more] |
A0A2K1XNQ7 | 3.7e-12 | 38.13 | Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G013000 PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |