Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCAAAAGATCGCCATCGTCGTCTTTCTGACAAATCCTTCTCCTTACTCCAATCAAATGAGTTTTTCGTCAATAAGATTCTCTCCAGAAACTCCTCCTTCGACCGCTCTGCCCGTCTCTCCGCCTGCGGTCTGCCCGGTCAAATCCCCTTCCAATGGGAAGCACAGCCCGGAAAGCCCAAATATCAAACCTCTGAGAAACTTCCGCCGATCTGCCTCCCACCTCCGGCGGCGTCCAGCGAAGACCTCCCCAAGGCTTCTCACATAGTCCCCAAGCAGCAGCAGGAACCAGTTAGAGTTTGGTTTTGGAAGAAGCCGAAGGTTAAGGGGAGGAAAGTCGCAAAGAAAACCTGCGCGTTTGGATCATCGTCTTCATCAAGACGACGTGACGACGAGAGTGAGTACTGCAGAAAATCAAACGACGAGTCGTTGTCTTGCATCTCTTACTCTTTATCCTCGAGTTCTTCTTCGTCTTCCTCAAATGGTTACGATCGACGGCGCTCGAAAATCGGCCGCCTGGCGAAAGGCTTCATAAGGTGGGCGTTCTGA
mRNA sequence
ATGGCCGCAAAAGATCGCCATCGTCGTCTTTCTGACAAATCCTTCTCCTTACTCCAATCAAATGAGTTTTTCGTCAATAAGATTCTCTCCAGAAACTCCTCCTTCGACCGCTCTGCCCGTCTCTCCGCCTGCGGTCTGCCCGGTCAAATCCCCTTCCAATGGGAAGCACAGCCCGGAAAGCCCAAATATCAAACCTCTGAGAAACTTCCGCCGATCTGCCTCCCACCTCCGGCGGCGTCCAGCGAAGACCTCCCCAAGGCTTCTCACATAGTCCCCAAGCAGCAGCAGGAACCAGTTAGAGTTTGGTTTTGGAAGAAGCCGAAGGTTAAGGGGAGGAAAGTCGCAAAGAAAACCTGCGCGTTTGGATCATCGTCTTCATCAAGACGACGTGACGACGAGAGTGAGTACTGCAGAAAATCAAACGACGAGTCGTTGTCTTGCATCTCTTACTCTTTATCCTCGAGTTCTTCTTCGTCTTCCTCAAATGGTTACGATCGACGGCGCTCGAAAATCGGCCGCCTGGCGAAAGGCTTCATAAGGTGGGCGTTCTGA
Coding sequence (CDS)
ATGGCCGCAAAAGATCGCCATCGTCGTCTTTCTGACAAATCCTTCTCCTTACTCCAATCAAATGAGTTTTTCGTCAATAAGATTCTCTCCAGAAACTCCTCCTTCGACCGCTCTGCCCGTCTCTCCGCCTGCGGTCTGCCCGGTCAAATCCCCTTCCAATGGGAAGCACAGCCCGGAAAGCCCAAATATCAAACCTCTGAGAAACTTCCGCCGATCTGCCTCCCACCTCCGGCGGCGTCCAGCGAAGACCTCCCCAAGGCTTCTCACATAGTCCCCAAGCAGCAGCAGGAACCAGTTAGAGTTTGGTTTTGGAAGAAGCCGAAGGTTAAGGGGAGGAAAGTCGCAAAGAAAACCTGCGCGTTTGGATCATCGTCTTCATCAAGACGACGTGACGACGAGAGTGAGTACTGCAGAAAATCAAACGACGAGTCGTTGTCTTGCATCTCTTACTCTTTATCCTCGAGTTCTTCTTCGTCTTCCTCAAATGGTTACGATCGACGGCGCTCGAAAATCGGCCGCCTGGCGAAAGGCTTCATAAGGTGGGCGTTCTGA
Protein sequence
MAAKDRHRRLSDKSFSLLQSNEFFVNKILSRNSSFDRSARLSACGLPGQIPFQWEAQPGKPKYQTSEKLPPICLPPPAASSEDLPKASHIVPKQQQEPVRVWFWKKPKVKGRKVAKKTCAFGSSSSSRRRDDESEYCRKSNDESLSCISYSLSSSSSSSSSNGYDRRRSKIGRLAKGFIRWAF
Homology
BLAST of Sgr027068 vs. NCBI nr
Match:
KAA0058272.1 (hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa])
HSP 1 Score: 208.8 bits (530), Expect = 4.1e-50
Identity = 126/193 (65.28%), Postives = 144/193 (74.61%), Query Frame = 0
Query: 1 MAAKDRH-RRLSDKSFSLLQSNEFFVNKILSRNSSFDRSARLSACGLPGQIPFQWEAQPG 60
MAAKD RLS+K FSLLQ+N+FFV+KILSRNSSF RSARL ACGLPGQIPF WE QPG
Sbjct: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
Query: 61 KPKYQTSEKLPPICLPPPAASSEDLPKASHIVPKQQQEPVRVWFWKKPKVKGRKVAKKTC 120
PK Q SE PP LPPP++S+ L K H+VPK Q PV++WFW K + K R+ KK
Sbjct: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPK--QAPVKIWFWNKQRRKSRRAVKKNG 120
Query: 121 AFGSSSSSRRR-DDESEYC-RKSNDE-----SLSCISYSLSSSSSSSSSNG--YDRRRSK 180
A GSSSS RR D ESE+C RKSNDE SLSCISYSLSS+SSS+SS+ +RRRSK
Sbjct: 121 ALGSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSK 180
Query: 181 IGRLAKGFIRWAF 184
+G LAK FIRWAF
Sbjct: 181 LGSLAKEFIRWAF 191
BLAST of Sgr027068 vs. NCBI nr
Match:
TYK11824.1 (hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa])
HSP 1 Score: 206.8 bits (525), Expect = 1.5e-49
Identity = 125/193 (64.77%), Postives = 143/193 (74.09%), Query Frame = 0
Query: 1 MAAKDRH-RRLSDKSFSLLQSNEFFVNKILSRNSSFDRSARLSACGLPGQIPFQWEAQPG 60
MAAKD RLS+K FSLLQ+N+FFV+KILSRNSSF RSARL ACGLPGQIPF WE QPG
Sbjct: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
Query: 61 KPKYQTSEKLPPICLPPPAASSEDLPKASHIVPKQQQEPVRVWFWKKPKVKGRKVAKKTC 120
PK Q SE PP LPPP++S+ L K H+VPK Q PV++WFW K + K R+ KK
Sbjct: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPK--QAPVKIWFWNKQRRKSRRAVKKNG 120
Query: 121 AFGSSSSSRRR-DDESEYC-RKSND-----ESLSCISYSLSSSSSSSSSNG--YDRRRSK 180
A GSSSS RR D ESE+C RKSND SLSCISYSLSS+SSS+SS+ +RRRSK
Sbjct: 121 ALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSK 180
Query: 181 IGRLAKGFIRWAF 184
+G LAK FIRWAF
Sbjct: 181 LGSLAKEFIRWAF 191
BLAST of Sgr027068 vs. NCBI nr
Match:
KGN65459.1 (hypothetical protein Csa_020126 [Cucumis sativus])
HSP 1 Score: 204.5 bits (519), Expect = 7.7e-49
Identity = 119/192 (61.98%), Postives = 143/192 (74.48%), Query Frame = 0
Query: 1 MAAKDRH-RRLSDKSFSLLQSNEFFVNKILSRNSSFDRSARLSACGLPGQIPFQWEAQPG 60
MAAKD RLS+K FSLLQ+N+ FV+KILSRNSSF RSARL ACGLPGQ+PF WEAQPG
Sbjct: 1 MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPG 60
Query: 61 KPKYQTSEKLPPICLPPPAASSEDLPKASHIVPKQQQEPVRVWFWKKPKVKGRKVAKKTC 120
PK Q S+ PP+ LPPP++S+ L K H+VPK Q PV++WFW K + K R+ KK+
Sbjct: 61 LPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPK--QAPVKIWFWNKQRRKSRRAVKKSG 120
Query: 121 AFGSSSSSRRRDDESEYCR-KSNDE-----SLSCISYSLSSSSSSSSSNG--YDRRRSKI 180
A GSSS R D +SE+CR KSNDE SLSCISYS+SS+SSS+SS+ +RRR K+
Sbjct: 121 ALGSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKL 180
Query: 181 GRLAKGFIRWAF 184
G LAK FIRWAF
Sbjct: 181 GSLAKEFIRWAF 190
BLAST of Sgr027068 vs. NCBI nr
Match:
XP_022987494.1 (uncharacterized protein LOC111485037 [Cucurbita maxima])
HSP 1 Score: 185.7 bits (470), Expect = 3.7e-43
Identity = 116/188 (61.70%), Postives = 129/188 (68.62%), Query Frame = 0
Query: 5 DRHRRLSDKSFSLLQSNEFFVNKILSRNSSFDRSARLSACGLPGQIPFQWEAQPGKPKYQ 64
D S+ FSLLQ+NE FV+KILSRNSS RSARL AC LPGQIPF WEAQPG PK +
Sbjct: 4 DHRLHPSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKDK 63
Query: 65 TSEKLPPICLPPPAASSEDLPKASHIVPKQQQEPVRVWFWKKPKVKGRKVAKKTCAFGSS 124
SE L P PPP + K H VPK QQE ++W W KP+ K R V KK AFGSS
Sbjct: 64 PSENLHP---PPPPNYVDGTSKTPHQVPK-QQEAAKIWSWMKPRKKLRNVVKKNGAFGSS 123
Query: 125 SSSRRR-DDESEYCRKSNDE--------SLSCISYSLSSSSSSSSSNGYDRRRSKIGRLA 184
SSSR + ESE+CRKSNDE SLSCIS+SL SSSSSSSNGY RRRSK+ LA
Sbjct: 124 SSSRPHVNQESEFCRKSNDESSSSTTPSSLSCISHSL--SSSSSSSNGYARRRSKLSSLA 183
BLAST of Sgr027068 vs. NCBI nr
Match:
KAG6589705.1 (Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 181.4 bits (459), Expect = 7.0e-42
Identity = 115/181 (63.54%), Postives = 130/181 (71.82%), Query Frame = 0
Query: 5 DRHR-RLSDKSFSLLQSNEFFVNKILSRNSSFDRSARLSACGLPGQIPFQWEAQPGKPKY 64
+ HR LS+ FSLLQ+NE FV+KILSRNSS RSARL AC LPGQIPF WEAQPG PK
Sbjct: 3 NEHRLHLSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKD 62
Query: 65 QTSEKLPPICLPPPAASSEDLPKASHIVPKQQQEPVRVWFWKKPKVKGRKVAKKTCAFGS 124
+ SE L P PP S + K H VP +QQE ++WFW KP+ K R V KK AFGS
Sbjct: 63 KPSENLQP---PPSPNSVQGASKTPHQVP-EQQEAAKIWFWMKPRKKLRNVVKKNGAFGS 122
Query: 125 SSSSRRR-DDESEYCRKSNDE---SLSCISYSLSSSSSSSSSNGYDRRRSKIGRLAKGFI 181
SSSSRR + ESE+ RKSNDE SLSCIS+SL SSSSSSSNGY RRRSK+ LAKGF+
Sbjct: 123 SSSSRRHVNQESEFYRKSNDESSSSLSCISHSL--SSSSSSSNGYARRRSKLSSLAKGFL 177
BLAST of Sgr027068 vs. ExPASy TrEMBL
Match:
A0A5A7UQX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005980 PE=4 SV=1)
HSP 1 Score: 208.8 bits (530), Expect = 2.0e-50
Identity = 126/193 (65.28%), Postives = 144/193 (74.61%), Query Frame = 0
Query: 1 MAAKDRH-RRLSDKSFSLLQSNEFFVNKILSRNSSFDRSARLSACGLPGQIPFQWEAQPG 60
MAAKD RLS+K FSLLQ+N+FFV+KILSRNSSF RSARL ACGLPGQIPF WE QPG
Sbjct: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
Query: 61 KPKYQTSEKLPPICLPPPAASSEDLPKASHIVPKQQQEPVRVWFWKKPKVKGRKVAKKTC 120
PK Q SE PP LPPP++S+ L K H+VPK Q PV++WFW K + K R+ KK
Sbjct: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPK--QAPVKIWFWNKQRRKSRRAVKKNG 120
Query: 121 AFGSSSSSRRR-DDESEYC-RKSNDE-----SLSCISYSLSSSSSSSSSNG--YDRRRSK 180
A GSSSS RR D ESE+C RKSNDE SLSCISYSLSS+SSS+SS+ +RRRSK
Sbjct: 121 ALGSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSK 180
Query: 181 IGRLAKGFIRWAF 184
+G LAK FIRWAF
Sbjct: 181 LGSLAKEFIRWAF 191
BLAST of Sgr027068 vs. ExPASy TrEMBL
Match:
A0A5D3CKX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00370 PE=4 SV=1)
HSP 1 Score: 206.8 bits (525), Expect = 7.5e-50
Identity = 125/193 (64.77%), Postives = 143/193 (74.09%), Query Frame = 0
Query: 1 MAAKDRH-RRLSDKSFSLLQSNEFFVNKILSRNSSFDRSARLSACGLPGQIPFQWEAQPG 60
MAAKD RLS+K FSLLQ+N+FFV+KILSRNSSF RSARL ACGLPGQIPF WE QPG
Sbjct: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
Query: 61 KPKYQTSEKLPPICLPPPAASSEDLPKASHIVPKQQQEPVRVWFWKKPKVKGRKVAKKTC 120
PK Q SE PP LPPP++S+ L K H+VPK Q PV++WFW K + K R+ KK
Sbjct: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPK--QAPVKIWFWNKQRRKSRRAVKKNG 120
Query: 121 AFGSSSSSRRR-DDESEYC-RKSND-----ESLSCISYSLSSSSSSSSSNG--YDRRRSK 180
A GSSSS RR D ESE+C RKSND SLSCISYSLSS+SSS+SS+ +RRRSK
Sbjct: 121 ALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSK 180
Query: 181 IGRLAKGFIRWAF 184
+G LAK FIRWAF
Sbjct: 181 LGSLAKEFIRWAF 191
BLAST of Sgr027068 vs. ExPASy TrEMBL
Match:
A0A0A0LWV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1)
HSP 1 Score: 204.5 bits (519), Expect = 3.7e-49
Identity = 119/192 (61.98%), Postives = 143/192 (74.48%), Query Frame = 0
Query: 1 MAAKDRH-RRLSDKSFSLLQSNEFFVNKILSRNSSFDRSARLSACGLPGQIPFQWEAQPG 60
MAAKD RLS+K FSLLQ+N+ FV+KILSRNSSF RSARL ACGLPGQ+PF WEAQPG
Sbjct: 1 MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPG 60
Query: 61 KPKYQTSEKLPPICLPPPAASSEDLPKASHIVPKQQQEPVRVWFWKKPKVKGRKVAKKTC 120
PK Q S+ PP+ LPPP++S+ L K H+VPK Q PV++WFW K + K R+ KK+
Sbjct: 61 LPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPK--QAPVKIWFWNKQRRKSRRAVKKSG 120
Query: 121 AFGSSSSSRRRDDESEYCR-KSNDE-----SLSCISYSLSSSSSSSSSNG--YDRRRSKI 180
A GSSS R D +SE+CR KSNDE SLSCISYS+SS+SSS+SS+ +RRR K+
Sbjct: 121 ALGSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKL 180
Query: 181 GRLAKGFIRWAF 184
G LAK FIRWAF
Sbjct: 181 GSLAKEFIRWAF 190
BLAST of Sgr027068 vs. ExPASy TrEMBL
Match:
A0A6J1JJ17 (uncharacterized protein LOC111485037 OS=Cucurbita maxima OX=3661 GN=LOC111485037 PE=4 SV=1)
HSP 1 Score: 185.7 bits (470), Expect = 1.8e-43
Identity = 116/188 (61.70%), Postives = 129/188 (68.62%), Query Frame = 0
Query: 5 DRHRRLSDKSFSLLQSNEFFVNKILSRNSSFDRSARLSACGLPGQIPFQWEAQPGKPKYQ 64
D S+ FSLLQ+NE FV+KILSRNSS RSARL AC LPGQIPF WEAQPG PK +
Sbjct: 4 DHRLHPSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKDK 63
Query: 65 TSEKLPPICLPPPAASSEDLPKASHIVPKQQQEPVRVWFWKKPKVKGRKVAKKTCAFGSS 124
SE L P PPP + K H VPK QQE ++W W KP+ K R V KK AFGSS
Sbjct: 64 PSENLHP---PPPPNYVDGTSKTPHQVPK-QQEAAKIWSWMKPRKKLRNVVKKNGAFGSS 123
Query: 125 SSSRRR-DDESEYCRKSNDE--------SLSCISYSLSSSSSSSSSNGYDRRRSKIGRLA 184
SSSR + ESE+CRKSNDE SLSCIS+SL SSSSSSSNGY RRRSK+ LA
Sbjct: 124 SSSRPHVNQESEFCRKSNDESSSSTTPSSLSCISHSL--SSSSSSSNGYARRRSKLSSLA 183
BLAST of Sgr027068 vs. ExPASy TrEMBL
Match:
A0A314YA94 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07660 PE=4 SV=1)
HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13
Identity = 78/212 (36.79%), Postives = 106/212 (50.00%), Query Frame = 0
Query: 13 KSFSLLQSNEFFVNKILSRNSSFDRSARLSAC--GLPGQIPFQWEAQPGKPKYQTSE--- 72
K+ ++ +NEFF NKILSRNSS S+ S + G +PFQWEA+PGKPK + +
Sbjct: 12 KTLAIFPANEFFYNKILSRNSSVGSSSSRSYYFGRVTGSVPFQWEAKPGKPKLEAHDEEQ 71
Query: 73 ---------KLPPICL-PPPAASS---EDLPKASHIVPKQQQEPVRVWFWKKPKVKGRKV 132
+ PP+ + PPPA S LP +S RVW WKK K K K+
Sbjct: 72 QQHQNFDFAQNPPLIIGPPPATQSLNMNSLPYSSGPFSNS-----RVWLWKKLK-KTHKL 131
Query: 133 AKKTCAFGSSSSSRRRDD--------ESEYCRKSND---------ESLSCISYSLSS--- 184
+K ++ D+ +++ C+ + S SC S SLSS
Sbjct: 132 KRKLKKINKNNGEGNFDNAGLEQLYHQADLCKSDEEIMKFGSYGSSSSSCNSSSLSSTAS 191
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0058272.1 | 4.1e-50 | 65.28 | hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa] | [more] |
TYK11824.1 | 1.5e-49 | 64.77 | hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa] | [more] |
KGN65459.1 | 7.7e-49 | 61.98 | hypothetical protein Csa_020126 [Cucumis sativus] | [more] |
XP_022987494.1 | 3.7e-43 | 61.70 | uncharacterized protein LOC111485037 [Cucurbita maxima] | [more] |
KAG6589705.1 | 7.0e-42 | 63.54 | Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. s... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UQX0 | 2.0e-50 | 65.28 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3CKX4 | 7.5e-50 | 64.77 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0LWV3 | 3.7e-49 | 61.98 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1 | [more] |
A0A6J1JJ17 | 1.8e-43 | 61.70 | uncharacterized protein LOC111485037 OS=Cucurbita maxima OX=3661 GN=LOC111485037... | [more] |
A0A314YA94 | 1.5e-13 | 36.79 | Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_076... | [more] |
Match Name | E-value | Identity | Description | |