Sgr026926 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr026926
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	RING/U-box superfamily protein
Location	tig00153047: 2287174 .. 2287625 (+)
RNA-Seq Expression	Sgr026926
Synteny	Sgr026926

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGTGGTTCGGATTCGAATCGGATGGATTCATATCAAGGATTGAACGGACAGTTTGATGACAGAGAGATTCAGAGCATGATTACCGAACTAGAAGACATGCGTTCCCTTTCCTTAATGCCAATCACGATTCAATTCGACGAATCGAACAGTTGGATGTGGGATTTTTCGTTCTTAAACGATTTGCCGGTATACAGAGAACTGGAAAATCACGATGAGCCTGATTCTGTAGCATACGATATCGGTGTTCAGAACGAGACGATTCTCATCACTCGAGCTTCATCAAGAACAGTAGTTCAGAACCTCCGACGGTGGTTATGAGTGAAGAAGATGTAGAGAAGGAGGATGCTTTTTGTTCGATTTGCATGGATGAGATTAAAGTGGGCGAAGAAGCGAAGCAGTTGCCGTGCCGCCATTGGTATCATGGGGAGTGTATACGCCATGGCTGA

mRNA sequence

ATGGCCGGTGGTTCGGATTCGAATCGGATGGATTCATATCAAGGATTGAACGGACAGTTTGATGACAGAGAGATTCAGAGCATGATTACCGAACTAGAAGACATGCGTTCCCTTTCCTTAATGCCAATCACGATTCAATTCGACGAATCGAACAAACGAGACGATTCTCATCACTCGAGCTTCATCAAGAACAGTAGTTCAGAACCTCCGACGGTGGTTATGAGTGAAGAAGATGTAGAGAAGGAGGATGCTTTTTGTTCGATTTGCATGGATGAGATTAAAGTGGGCGAAGAAGCGAAGCAGTTGCCGTGCCGCCATTGGTATCATGGGGAGTGTATACGCCATGGCTGA

Coding sequence (CDS)

ATGGCCGGTGGTTCGGATTCGAATCGGATGGATTCATATCAAGGATTGAACGGACAGTTTGATGACAGAGAGATTCAGAGCATGATTACCGAACTAGAAGACATGCGTTCCCTTTCCTTAATGCCAATCACGATTCAATTCGACGAATCGAACAAACGAGACGATTCTCATCACTCGAGCTTCATCAAGAACAGTAGTTCAGAACCTCCGACGGTGGTTATGAGTGAAGAAGATGTAGAGAAGGAGGATGCTTTTTGTTCGATTTGCATGGATGAGATTAAAGTGGGCGAAGAAGCGAAGCAGTTGCCGTGCCGCCATTGGTATCATGGGGAGTGTATACGCCATGGCTGA

Protein sequence

MAGGSDSNRMDSYQGLNGQFDDREIQSMITELEDMRSLSLMPITIQFDESNKRDDSHHSSFIKNSSSEPPTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECIRHG

Homology

[Close]

BLAST of Sgr026926 vs. NCBI nr
Match: GEW35062.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 74.7 bits (182), Expect = 5.8e-10
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 70  PTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           PTVVM++EDVEK D  C++C DE++VG+ A QLPC HWYHG+CI
Sbjct: 303 PTVVMTKEDVEKNDTTCAVCKDEVEVGKIATQLPCSHWYHGDCI 346

[Close]

BLAST of Sgr026926 vs. NCBI nr
Match: XP_023898728.1 (uncharacterized protein LOC112010611 [Quercus suber])

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-09
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 60  SFIKNSSSEPPTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           SF+KN SS    VVM++EDVE ++A C++C D+I VGE+AKQLPC H YHG+CI
Sbjct: 418 SFVKNLSS----VVMTQEDVEGKNALCAVCKDDIGVGEQAKQLPCAHRYHGDCI 467

[Close]

BLAST of Sgr026926 vs. NCBI nr
Match: XP_021909506.1 (uncharacterized protein LOC110823438 [Carica papaya])

HSP 1 Score: 71.6 bits (174), Expect = 4.9e-09
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 70  PTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           P VV+++E +EK DAFC+IC DE+ VGE+AKQLPC H YHG+CI
Sbjct: 383 PLVVLTQEYIEKNDAFCAICKDEMNVGEKAKQLPCTHRYHGDCI 426

[Close]

BLAST of Sgr026926 vs. NCBI nr
Match: KAB2633650.1 (hypothetical protein D8674_029897 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 70.9 bits (172), Expect = 8.4e-09
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 70  PTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           P+VV+++EDVEK +A C++C DE+K GE+AKQLPC H YHG+CI
Sbjct: 396 PSVVLTQEDVEKGNALCAVCKDEMKSGEQAKQLPCTHRYHGDCI 439

[Close]

BLAST of Sgr026926 vs. NCBI nr
Match: XP_009337814.1 (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Pyrus x bretschneideri])

HSP 1 Score: 70.9 bits (172), Expect = 8.4e-09
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 70  PTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           P+VV+++EDVEK +A C++C DE+K GE+AKQLPC H YHG+CI
Sbjct: 382 PSVVLTQEDVEKGNALCAVCKDEMKSGEQAKQLPCTHRYHGDCI 425

[Close]

BLAST of Sgr026926 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-07
Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 70  PTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           PT+ +++  +   D+ C +C DE ++G EAKQ+PC H YH +CI
Sbjct: 174 PTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCI 217

[Close]

BLAST of Sgr026926 vs. ExPASy Swiss-Prot
Match: Q94AK4 (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06
Identity = 20/51 (39.22%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 63  KNSSSEPPTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           K+S    PT+ ++++ ++  D+ C +C DE ++  EAKQ+PC H YH +CI
Sbjct: 163 KSSIDALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCI 213

[Close]

BLAST of Sgr026926 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.4e-05
Identity = 19/51 (37.25%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 63  KNSSSEPPTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           K++    P V +++ ++  E   C++CMD+ + G EAKQ+PC+H YH +C+
Sbjct: 201 KSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCL 251

[Close]

BLAST of Sgr026926 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.6e-05
Identity = 18/51 (35.29%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 63  KNSSSEPPTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           K++    PTV ++++ ++ E   C++CMDE + G + KQ+PC+H +H +C+
Sbjct: 193 KSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCL 243

[Close]

BLAST of Sgr026926 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.6e-05
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 81  KEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           +E   CS+C+D+++VG +AKQ+PC H +H  CI
Sbjct: 194 EEVVSCSVCLDDLEVGSQAKQMPCEHKFHSSCI 226

[Close]

BLAST of Sgr026926 vs. ExPASy TrEMBL
Match: A0A5N5I7M9 (RING-type domain-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_029897 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.1e-09
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 70  PTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           P+VV+++EDVEK +A C++C DE+K GE+AKQLPC H YHG+CI
Sbjct: 396 PSVVLTQEDVEKGNALCAVCKDEMKSGEQAKQLPCTHRYHGDCI 439

[Close]

BLAST of Sgr026926 vs. ExPASy TrEMBL
Match: A0A540LGP7 (RING-type domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028788 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.1e-09
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 70  PTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           P+VV+++EDVEK +A C++C DE+K GE+AKQLPC H YHG+CI
Sbjct: 387 PSVVLTQEDVEKGNALCAVCKDEMKSGEQAKQLPCTHRYHGDCI 430

[Close]

BLAST of Sgr026926 vs. ExPASy TrEMBL
Match: A0A498JSG0 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_008986 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-09
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 70  PTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           P+VV+++EDVEK +A C++C DE+K GE+AKQLPC H YHG+CI
Sbjct: 394 PSVVLTQEDVEKGNAVCAVCKDEMKSGEQAKQLPCTHRYHGDCI 437

[Close]

BLAST of Sgr026926 vs. ExPASy TrEMBL
Match: B9RLH2 (Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1466950 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-09
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 70  PTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           P+VV+++EDVE  +A C++C DEI VGE+AKQLPC H YHG+CI
Sbjct: 396 PSVVLTKEDVESNNALCAVCKDEINVGEKAKQLPCTHRYHGDCI 439

[Close]

BLAST of Sgr026926 vs. ExPASy TrEMBL
Match: A0A540KDX4 (RING-type domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_042302 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-09
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 70  PTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           P+VV+++EDVEK +A C++C DE+K GE+AKQLPC H YHG+CI
Sbjct: 394 PSVVLTQEDVEKGNAVCAVCKDEMKSGEQAKQLPCTHRYHGDCI 437

[Close]

BLAST of Sgr026926 vs. TAIR 10
Match: AT2G40830.2 (RING-H2 finger C1A )

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-08
Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 70  PTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           PT+ +++  +   D+ C +C DE ++G EAKQ+PC H YH +CI
Sbjct: 174 PTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCI 217

[Close]

BLAST of Sgr026926 vs. TAIR 10
Match: AT2G40830.1 (RING-H2 finger C1A )

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-08
Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 70  PTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           PT+ +++  +   D+ C +C DE ++G EAKQ+PC H YH +CI
Sbjct: 174 PTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCI 217

[Close]

BLAST of Sgr026926 vs. TAIR 10
Match: AT2G40830.3 (RING-H2 finger C1A )

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-08
Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 70  PTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           PT+ +++  +   D+ C +C DE ++G EAKQ+PC H YH +CI
Sbjct: 174 PTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCI 217

[Close]

BLAST of Sgr026926 vs. TAIR 10
Match: AT3G02340.1 (RING/U-box superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 21/51 (41.18%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 63  KNSSSEPPTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           K+   + P V ++ E+++K +  C++C DE+ V E+ ++LPC H+YHGECI
Sbjct: 312 KSVIQDLPVVELAVEELDKGNNVCAVCKDEMLVEEKVRRLPCSHFYHGECI 362

[Close]

BLAST of Sgr026926 vs. TAIR 10
Match: AT3G56580.2 (RING/U-box superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 20/51 (39.22%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 63  KNSSSEPPTVVMSEEDVEKEDAFCSICMDEIKVGEEAKQLPCRHWYHGECI 114
           K+S    PT+ ++++ ++  D+ C +C DE ++  EAKQ+PC H YH +CI
Sbjct: 163 KSSIDALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCI 213

The following BLAST results are available for this feature:

BLAST of Sgr026926 vs. NCBI nr


Match Name	E-value	Identity	Description
GEW35062.1	5.8e-10	65.91	hypothetical protein [Tanacetum cinerariifolium]	[more]
XP_023898728.1	3.8e-09	61.11	uncharacterized protein LOC112010611 [Quercus suber]	[more]
XP_021909506.1	4.9e-09	65.91	uncharacterized protein LOC110823438 [Carica papaya]	[more]
KAB2633650.1	8.4e-09	63.64	hypothetical protein D8674_029897 [Pyrus ussuriensis x Pyrus communis]	[more]
XP_009337814.1	8.4e-09	63.64	PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Pyrus x bretschneideri]	[more]

BLAST of Sgr026926 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22197	6.3e-07	43.18	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q94AK4	1.8e-06	39.22	E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV...	[more]
P0CH30	3.4e-05	37.25	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q8LPN7	7.6e-05	35.29	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q6AVN2	7.6e-05	48.48	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]

BLAST of Sgr026926 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N5I7M9	4.1e-09	63.64	RING-type domain-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=244...	[more]
A0A540LGP7	4.1e-09	63.64	RING-type domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028788 P...	[more]
A0A498JSG0	5.3e-09	63.64	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_008986 PE=4 SV=1	[more]
B9RLH2	5.3e-09	63.64	Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1466950 PE=4 S...	[more]
A0A540KDX4	5.3e-09	63.64	RING-type domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_042302 P...	[more]

BLAST of Sgr026926 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40830.2	4.4e-08	43.18	RING-H2 finger C1A	[more]
AT2G40830.1	4.4e-08	43.18	RING-H2 finger C1A	[more]
AT2G40830.3	4.4e-08	43.18	RING-H2 finger C1A	[more]
AT3G02340.1	1.3e-07	41.18	RING/U-box superfamily protein	[more]
AT3G56580.2	1.3e-07	39.22	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 62..115 e-value: 1.6E-11 score: 45.3
IPR001841	Zinc finger, RING-type	PFAM	PF17123	zf-RING_11	coord: 86..113 e-value: 1.6E-11 score: 43.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..77
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 71..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr026926.1	Sgr026926.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0061630	ubiquitin protein ligase activity