Sgr026466 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr026466
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
DescriptionLysM domain-containing protein
Locationtig00153031: 5689736 .. 5690065 (+)
RNA-Seq ExpressionSgr026466
SyntenySgr026466
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGATATCAGTACTTCATAGCCAGCGCCACTGTGCTTCGACAATGGCGGTTCTGCTTCTGGTTTTGAGCTGCTGTTGCTGCTGCCAGAGCCAAGAGTTGACGGCGGCCGAGAGGGAGATGGCTCAGAGAGATGCCATGTTGAACGCTTGTGATGAGATATATGTCGTTCGTGAAGGAGAAACTTTGCAGACGATCAGTGAAAAGTGTGGAGATCCATTTATTCTTGAAGAGAATCCTCATATTAATGACCCAGATGATGTTTTTCCCGGTTTGGTCATCAAGATCACTCCTTTTCAACATATCATTCATGGCTTTCTCACCTGA

mRNA sequence

ATGGCGAAGATATCAGTACTTCATAGCCAGCGCCACTGTGCTTCGACAATGGCGGTTCTGCTTCTGGTTTTGAGCTGCTGTTGCTGCTGCCAGAGCCAAGAGTTGACGGCGGCCGAGAGGGAGATGGCTCAGAGAGATGCCATGTTGAACGCTTGTGATGAGATATATGTCGTTCGTGAAGGAGAAACTTTGCAGACGATCAGTGAAAAGTGTGGAGATCCATTTATTCTTGAAGAGAATCCTCATATTAATGACCCAGATGATGTTTTTCCCGGTTTGGTCATCAAGATCACTCCTTTTCAACATATCATTCATGGCTTTCTCACCTGA

Coding sequence (CDS)

ATGGCGAAGATATCAGTACTTCATAGCCAGCGCCACTGTGCTTCGACAATGGCGGTTCTGCTTCTGGTTTTGAGCTGCTGTTGCTGCTGCCAGAGCCAAGAGTTGACGGCGGCCGAGAGGGAGATGGCTCAGAGAGATGCCATGTTGAACGCTTGTGATGAGATATATGTCGTTCGTGAAGGAGAAACTTTGCAGACGATCAGTGAAAAGTGTGGAGATCCATTTATTCTTGAAGAGAATCCTCATATTAATGACCCAGATGATGTTTTTCCCGGTTTGGTCATCAAGATCACTCCTTTTCAACATATCATTCATGGCTTTCTCACCTGA

Protein sequence

MAKISVLHSQRHCASTMAVLLLVLSCCCCCQSQELTAAEREMAQRDAMLNACDEIYVVREGETLQTISEKCGDPFILEENPHINDPDDVFPGLVIKITPFQHIIHGFLT
Homology
BLAST of Sgr026466 vs. NCBI nr
Match: KAG8376691.1 (hypothetical protein BUALT_Bualt09G0090200 [Buddleja alternifolia])

HSP 1 Score: 118.6 bits (296), Expect = 3.3e-23
Identity = 59/89 (66.29%), Postives = 67/89 (75.28%), Query Frame = 0

Query: 14  ASTMAVLLLVLSCCCCCQSQELTAAEREMAQRDAMLNACDEIYVVREGETLQTISEKCGD 73
           A+ +  L+LVLSCC      E TA E    +R  +   CDEIYVVREGETL TISEKCGD
Sbjct: 20  AALLLALMLVLSCCESSDGGEFTAGEMAKTERLFVERPCDEIYVVREGETLHTISEKCGD 79

Query: 74  PFILEENPHINDPDDVFPGLVIKITPFQH 103
           PFI+EENPHI+DPDDVFPGLVIKITPF +
Sbjct: 80  PFIVEENPHIHDPDDVFPGLVIKITPFNN 108

BLAST of Sgr026466 vs. NCBI nr
Match: XP_039066142.1 (uncharacterized protein LOC120211725 [Hibiscus syriacus] >KAE8718996.1 transcription initiation factor TFIID subunit 12-like [Hibiscus syriacus])

HSP 1 Score: 117.5 bits (293), Expect = 7.4e-23
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 12  HCASTMAVLLLVLSCCCCCQSQELTAAEREMAQRDAML----NACDEIYVVREGETLQTI 71
           HCA  MA +LL++SCC           E E ++R+A+L     ACDEIYVVREGETL TI
Sbjct: 17  HCALLMAAMLLLISCC-----------EDEPSEREALLRHGNKACDEIYVVREGETLHTI 76

Query: 72  SEKCGDPFILEENPHINDPDDVFPGLVIKITPF 101
            EKCGDPFI+E+NPHI+DPDDVFPGLV+KITPF
Sbjct: 77  GEKCGDPFIVEQNPHIHDPDDVFPGLVLKITPF 98

BLAST of Sgr026466 vs. NCBI nr
Match: XP_019186406.1 (PREDICTED: uncharacterized protein LOC109181107 [Ipomoea nil])

HSP 1 Score: 117.1 bits (292), Expect = 9.6e-23
Identity = 63/94 (67.02%), Postives = 71/94 (75.53%), Query Frame = 0

Query: 12  HCASTMAVLLLVLSCCCCCQSQELTAAEREMAQRD---AMLNACDEIYVVREGETLQTIS 71
           +CA  MA L+LVLS   CC+S E   A + M +R    A    CDEIYVVREGETL TIS
Sbjct: 21  YCALFMA-LMLVLS---CCESTENEFAAKMMVERPPHAAAAGVCDEIYVVREGETLHTIS 80

Query: 72  EKCGDPFILEENPHINDPDDVFPGLVIKITPFQH 103
           +KCGDPFI+EENPHI+DPDDVFPGLVIKITPF H
Sbjct: 81  DKCGDPFIVEENPHIHDPDDVFPGLVIKITPFNH 110

BLAST of Sgr026466 vs. NCBI nr
Match: XP_022744694.1 (uncharacterized protein LOC111295462 [Durio zibethinus])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 59/91 (64.84%), Postives = 68/91 (74.73%), Query Frame = 0

Query: 12  HCASTMAVLLLVLSCCCCCQSQELTAAEREMAQRDAMLNACDEIYVVREGETLQTISEKC 71
           HCA  MAV+L++   CCC +S       +E+         CDEIYVVREGETLQTISEKC
Sbjct: 17  HCALFMAVMLIL--SCCCEESSGKDYRGKEVLVLQQKNKPCDEIYVVREGETLQTISEKC 76

Query: 72  GDPFILEENPHINDPDDVFPGLVIKITPFQH 103
           GDPFI+EENPHI+DPDDVFPGLVIKITPF +
Sbjct: 77  GDPFIVEENPHIHDPDDVFPGLVIKITPFNN 105

BLAST of Sgr026466 vs. NCBI nr
Match: XP_017976703.1 (PREDICTED: uncharacterized protein LOC108662080 [Theobroma cacao])

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-22
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 0

Query: 12  HCASTMAVLLLVLSCCCCCQSQELTAAEREMAQRDAMLN-ACDEIYVVREGETLQTISEK 71
           +CA  MAV+L++    CC  S+     E    Q+D M+N  CDEIYVVREGETLQTISEK
Sbjct: 17  YCALFMAVMLVL---SCCESSERKFRGEVLRLQKDLMMNKPCDEIYVVREGETLQTISEK 76

Query: 72  CGDPFILEENPHINDPDDVFPGLVIKITPFQH 103
           CGDP+I+EENPHI+DPDDVFPGLVIKITPF++
Sbjct: 77  CGDPYIVEENPHIHDPDDVFPGLVIKITPFKN 105

BLAST of Sgr026466 vs. ExPASy TrEMBL
Match: A0A6A3BPY1 (Transcription initiation factor TFIID subunit 12-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00109982pilonHSYRG00029 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.6e-23
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 12  HCASTMAVLLLVLSCCCCCQSQELTAAEREMAQRDAML----NACDEIYVVREGETLQTI 71
           HCA  MA +LL++SCC           E E ++R+A+L     ACDEIYVVREGETL TI
Sbjct: 17  HCALLMAAMLLLISCC-----------EDEPSEREALLRHGNKACDEIYVVREGETLHTI 76

Query: 72  SEKCGDPFILEENPHINDPDDVFPGLVIKITPF 101
            EKCGDPFI+E+NPHI+DPDDVFPGLV+KITPF
Sbjct: 77  GEKCGDPFIVEQNPHIHDPDDVFPGLVLKITPF 98

BLAST of Sgr026466 vs. ExPASy TrEMBL
Match: A0A6P5YVX7 (uncharacterized protein LOC111295462 OS=Durio zibethinus OX=66656 GN=LOC111295462 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.9e-23
Identity = 59/91 (64.84%), Postives = 68/91 (74.73%), Query Frame = 0

Query: 12  HCASTMAVLLLVLSCCCCCQSQELTAAEREMAQRDAMLNACDEIYVVREGETLQTISEKC 71
           HCA  MAV+L++   CCC +S       +E+         CDEIYVVREGETLQTISEKC
Sbjct: 17  HCALFMAVMLIL--SCCCEESSGKDYRGKEVLVLQQKNKPCDEIYVVREGETLQTISEKC 76

Query: 72  GDPFILEENPHINDPDDVFPGLVIKITPFQH 103
           GDPFI+EENPHI+DPDDVFPGLVIKITPF +
Sbjct: 77  GDPFIVEENPHIHDPDDVFPGLVIKITPFNN 105

BLAST of Sgr026466 vs. ExPASy TrEMBL
Match: A0A2J6M9W5 (LysM domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_2X22821 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 59/91 (64.84%), Postives = 68/91 (74.73%), Query Frame = 0

Query: 15  STMAVLLLVLSCCCCCQSQELTAAEREMAQR----DAMLNACDEIYVVREGETLQTISEK 74
           S +  L+LVLSCC     + L     +MA R    D+M   CDEIYVVREGETL TISEK
Sbjct: 19  SLLLALMLVLSCC-----ESLATEAEQMATRVSIKDSMYRPCDEIYVVREGETLHTISEK 78

Query: 75  CGDPFILEENPHINDPDDVFPGLVIKITPFQ 102
           CGDP+I+EENPHI+DPDDVFPGLVIKITPF+
Sbjct: 79  CGDPYIVEENPHIHDPDDVFPGLVIKITPFK 104

BLAST of Sgr026466 vs. ExPASy TrEMBL
Match: A0A6J1AQQ1 (uncharacterized protein LOC110420373 OS=Herrania umbratica OX=108875 GN=LOC110420373 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 0

Query: 12  HCASTMAVLLLVLSCCCCCQSQELTAAEREMAQRDAMLN-ACDEIYVVREGETLQTISEK 71
           +CA  MAV+L++    CC  S+     E    Q+D M+N  CDEIYVVREGETLQTISEK
Sbjct: 18  YCALFMAVMLVL---SCCESSEREFRGEVLRQQKDLMMNKPCDEIYVVREGETLQTISEK 77

Query: 72  CGDPFILEENPHINDPDDVFPGLVIKITPFQH 103
           CGDP+I+EENPHI+DPDDVFPGLVIKITPF++
Sbjct: 78  CGDPYIVEENPHIHDPDDVFPGLVIKITPFKN 106

BLAST of Sgr026466 vs. ExPASy TrEMBL
Match: G7L607 (Peptidoglycan-binding LysM domain protein OS=Medicago truncatula OX=3880 GN=MTR_7g104250 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.3e-22
Identity = 64/91 (70.33%), Postives = 72/91 (79.12%), Query Frame = 0

Query: 11  RHCASTMAVLLLVLSCCCCCQSQELTAAEREMAQRDAMLN-ACDEIYVVREGETLQTISE 70
           R+C    AV++L+L+CC   +S ELT    EM QR A  N ACDEIYVVREGETL TISE
Sbjct: 7   RYCVLFSAVIILLLNCCESRRS-ELTV---EMKQRIANNNKACDEIYVVREGETLHTISE 66

Query: 71  KCGDPFILEENPHINDPDDVFPGLVIKITPF 101
           KCGDPFI+EENPHI+DPDDVFPGLVIKI PF
Sbjct: 67  KCGDPFIVEENPHIHDPDDVFPGLVIKINPF 93

BLAST of Sgr026466 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 90.5 bits (223), Expect = 9.0e-19
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 52  CDEIYVVREGETLQTISEKCGDPFILEENPHINDPDDVFPGLVIKITPF 101
           C+EIY+V EGETL TI +KCGDPFI+E NPHI+DPDDVFPGLV+KI PF
Sbjct: 48  CEEIYIVGEGETLHTIGDKCGDPFIVERNPHIHDPDDVFPGLVLKIAPF 96

BLAST of Sgr026466 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-17
Identity = 50/95 (52.63%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 12  HCASTMAVLLLVLSCCCCCQSQELTAAEREMAQRDAMLN-------ACDEIYVVREGETL 71
           +CA   A++LL+ S      +QE +    E  Q   M+        ACDEIY V+EGETL
Sbjct: 16  YCAVFAAMMLLMNSFQV---AQEGSTEIVEKQQPSMMITGYSHRRPACDEIYEVKEGETL 75

Query: 72  QTISEKCGDPFILEENPHINDPDDVFPGLVIKITP 100
           QTISEKCGDP+I+E NPHI+D DD+FPGL+I+ITP
Sbjct: 76  QTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITP 107

BLAST of Sgr026466 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 84.7 bits (208), Expect = 4.9e-17
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 45  RDAMLNACDEIYVVREGETLQTISEKCGDPFILEENPHINDPDDVFPGLVIKI 98
           +  M   C+E+YVV EG+TL +ISEKCGDPFI+E NPHI+DPDDVFPGL+IK+
Sbjct: 52  KQMMERPCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG8376691.13.3e-2366.29hypothetical protein BUALT_Bualt09G0090200 [Buddleja alternifolia][more]
XP_039066142.17.4e-2363.44uncharacterized protein LOC120211725 [Hibiscus syriacus] >KAE8718996.1 transcrip... [more]
XP_019186406.19.6e-2367.02PREDICTED: uncharacterized protein LOC109181107 [Ipomoea nil][more]
XP_022744694.11.6e-2264.84uncharacterized protein LOC111295462 [Durio zibethinus][more]
XP_017976703.12.1e-2265.22PREDICTED: uncharacterized protein LOC108662080 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6A3BPY13.6e-2363.44Transcription initiation factor TFIID subunit 12-like OS=Hibiscus syriacus OX=10... [more]
A0A6P5YVX77.9e-2364.84uncharacterized protein LOC111295462 OS=Durio zibethinus OX=66656 GN=LOC11129546... [more]
A0A2J6M9W51.0e-2264.84LysM domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_2X22821 PE=4 SV... [more]
A0A6J1AQQ11.4e-2265.22uncharacterized protein LOC110420373 OS=Herrania umbratica OX=108875 GN=LOC11042... [more]
G7L6072.3e-2270.33Peptidoglycan-binding LysM domain protein OS=Medicago truncatula OX=3880 GN=MTR_... [more]
Match NameE-valueIdentityDescription
AT5G62150.19.0e-1977.55peptidoglycan-binding LysM domain-containing protein [more]
AT3G52790.11.3e-1752.63peptidoglycan-binding LysM domain-containing protein [more]
AT4G25433.14.9e-1767.92peptidoglycan-binding LysM domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 45..102
e-value: 5.8E-9
score: 37.3
IPR018392LysM domainPFAMPF01476LysMcoord: 56..98
e-value: 5.0E-6
score: 26.5
IPR018392LysM domainCDDcd00118LysMcoord: 55..97
e-value: 5.24409E-7
score: 40.9317
NoneNo IPR availablePANTHERPTHR33648:SF15EMBRYO SAC 1coord: 10..101
NoneNo IPR availablePANTHERPTHR33648EMBRYO SAC 1coord: 10..101
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..26
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr026466.1Sgr026466.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane