Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTCTCTGGGCTTCGAGTTGTTGTGATTTTTGCTTTGTTGACAGCGTCGTGCATGGCTCAGGCGCCGGGTCCTGCACCGTCTCGTCCTCCCGCACCAGCCACGCCGGCGCCTTCTCCGGTCTTTATCCCTCCAGCTCCAACTCCGTCCCCAAACAGAGCACCATCACCGGCTCCCGCGTTACCCTCACCCGCTCCGGAAGGTCCTTCACCAGCGCCGGCGGCGCCTGCTCCAGCTCCAGCGACTAGTGCACCTACCCCAGCTCCAACCTCCACTCCTACTCCTTCGCCCAGTGGATCTCCCGCCGCTGCTCCTGTTCCACCCATCGCTTCTCCCCCTTCACCTACCGGAAACGAGGTGCCTTCACCGGCTCCCCAAGCACCGTCTGCCGACAACCCAGCTGGAGCAGCGTCGCACATCGGCGGAGCGGCTACATTCGGGATCGCAGTAGCTGCAACTTTGTTCGCAGTGGTCTTAGCGTAG
mRNA sequence
ATGGGATTCTCTGGGCTTCGAGTTGTTGTGATTTTTGCTTTGTTGACAGCGTCGTGCATGGCTCAGGCGCCGGGTCCTGCACCGTCTCGTCCTCCCGCACCAGCCACGCCGGCGCCTTCTCCGGTCTTTATCCCTCCAGCTCCAACTCCGTCCCCAAACAGAGCACCATCACCGGCTCCCGCGTTACCCTCACCCGCTCCGGAAGGTCCTTCACCAGCGCCGGCGGCGCCTGCTCCAGCTCCAGCGACTAGTGCACCTACCCCAGCTCCAACCTCCACTCCTACTCCTTCGCCCAGTGGATCTCCCGCCGCTGCTCCTGTTCCACCCATCGCTTCTCCCCCTTCACCTACCGGAAACGAGGTGCCTTCACCGGCTCCCCAAGCACCGTCTGCCGACAACCCAGCTGGAGCAGCGTCGCACATCGGCGGAGCGGCTACATTCGGGATCGCAGTAGCTGCAACTTTGTTCGCAGTGGTCTTAGCGTAG
Coding sequence (CDS)
ATGGGATTCTCTGGGCTTCGAGTTGTTGTGATTTTTGCTTTGTTGACAGCGTCGTGCATGGCTCAGGCGCCGGGTCCTGCACCGTCTCGTCCTCCCGCACCAGCCACGCCGGCGCCTTCTCCGGTCTTTATCCCTCCAGCTCCAACTCCGTCCCCAAACAGAGCACCATCACCGGCTCCCGCGTTACCCTCACCCGCTCCGGAAGGTCCTTCACCAGCGCCGGCGGCGCCTGCTCCAGCTCCAGCGACTAGTGCACCTACCCCAGCTCCAACCTCCACTCCTACTCCTTCGCCCAGTGGATCTCCCGCCGCTGCTCCTGTTCCACCCATCGCTTCTCCCCCTTCACCTACCGGAAACGAGGTGCCTTCACCGGCTCCCCAAGCACCGTCTGCCGACAACCCAGCTGGAGCAGCGTCGCACATCGGCGGAGCGGCTACATTCGGGATCGCAGTAGCTGCAACTTTGTTCGCAGTGGTCTTAGCGTAG
Protein sequence
MGFSGLRVVVIFALLTASCMAQAPGPAPSRPPAPATPAPSPVFIPPAPTPSPNRAPSPAPALPSPAPEGPSPAPAAPAPAPATSAPTPAPTSTPTPSPSGSPAAAPVPPIASPPSPTGNEVPSPAPQAPSADNPAGAASHIGGAATFGIAVAATLFAVVLA
Homology
BLAST of Sgr026153 vs. NCBI nr
Match:
XP_038881138.1 (vegetative cell wall protein gp1-like [Benincasa hispida])
HSP 1 Score: 176.8 bits (447), Expect = 1.5e-40
Identity = 128/167 (76.65%), Postives = 136/167 (81.44%), Query Frame = 0
Query: 1 MGFSGLRVVVIFALLTASCMAQAPGPAPSR----PPAPATPAPSPVFIPPAPTPSPNRAP 60
MGFSG+R VVIFALLT CMAQAP PAP PP P TPAPSPV PP+PTP+PNRAP
Sbjct: 1 MGFSGVRYVVIFALLTRLCMAQAPAPAPGSSQPLPPLPTTPAPSPVVFPPSPTPTPNRAP 60
Query: 61 --SPAPALPSPAPEGPSPAPAAPAPAPATSAPTPAPTSTPTPSPSGSPAAAPVPPIASPP 120
SPAPA PSPAPE PSPAPA PAPAPAT+APTPAP+S+ T PSG P VPPIASPP
Sbjct: 61 SLSPAPASPSPAPEAPSPAPAVPAPAPATTAPTPAPSSSLT--PSGGPV---VPPIASPP 120
Query: 121 SPTGNEVPSPAPQAPSADNPAGAASHIGGAATFGIAVAATLFAVVLA 162
SPTG EVPS APQAP+ADNPAGAASHIGGAA FGIAVA TLFAV+LA
Sbjct: 121 SPTGIEVPSSAPQAPAADNPAGAASHIGGAA-FGIAVAGTLFAVILA 161
BLAST of Sgr026153 vs. NCBI nr
Match:
KAA0036330.1 (hypothetical protein E6C27_scaffold18G001290 [Cucumis melo var. makuwa] >TYK12724.1 hypothetical protein E5676_scaffold255G003120 [Cucumis melo var. makuwa])
HSP 1 Score: 171.8 bits (434), Expect = 4.9e-39
Identity = 122/167 (73.05%), Postives = 131/167 (78.44%), Query Frame = 0
Query: 1 MGFSGLRVVVIFALLTASCMAQAPGPAPSRP----PAPATPAPSPVFIPPAPTPSPNRAP 60
MGFSG+R VVIFALLT CMAQAP PAP P P ATPAPSPV +PP+PTP+PNRAP
Sbjct: 1 MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60
Query: 61 SPA--PALPSPAPEGPSPAPAAPAPAPATSAPTPAPTSTPTPSPSGSPAAAPVPPIASPP 120
SP+ P PSPAP+ PSPAP PAPAPA APTP P STPT PSG P VPPIASPP
Sbjct: 61 SPSPTPVSPSPAPDAPSPAPVVPAPAPAPIAPTPTPISTPT--PSGGPV---VPPIASPP 120
Query: 121 SPTGNEVPSPAPQAPSADNPAGAASHIGGAATFGIAVAATLFAVVLA 162
SPTG EVPSPAPQ P ADNPAGAASHIGGAAT GIA+A TLFAV+L+
Sbjct: 121 SPTGIEVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 162
BLAST of Sgr026153 vs. NCBI nr
Match:
XP_023544207.1 (vegetative cell wall protein gp1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 147.1 bits (370), Expect = 1.3e-31
Identity = 119/179 (66.48%), Postives = 135/179 (75.42%), Query Frame = 0
Query: 1 MGFSGLRVVVIFALLTASCMAQAPGPAPS--------RPPAPATPAPSPVFIPPAPTPSP 60
MGFSG+R+VVIFAL+ A CMAQAP P P+ PP PATPAPSPV PPAP+ SP
Sbjct: 1 MGFSGVRLVVIFALM-ALCMAQAPAPTPAPAHDSPKPMPPTPATPAPSPVAFPPAPSRSP 60
Query: 61 NRAPSPAP--ALPSPAPEGPSPAPAAPAPAPATSAPTPAP-TSTPTPS------PSGSPA 120
RAPSP+P A PSPA E PSPAP+A APAP T APTP+P TS PTP+ PSGSPA
Sbjct: 61 IRAPSPSPTSASPSPATEAPSPAPSAHAPAPETKAPTPSPATSAPTPAPSSRPIPSGSPA 120
Query: 121 AAP-VPPIASPPSPTGNEVPSPAPQAPSADNPAGAASHIGGAATFGIAVAATLFAVVLA 162
AP VPPIASPPSP+ E PSP P+AP+AD+PAGAASHIGGA T GIA+A TL A+V+A
Sbjct: 121 GAPVVPPIASPPSPS-TEGPSPMPEAPAADSPAGAASHIGGATTLGIAIAGTLLAMVVA 177
BLAST of Sgr026153 vs. NCBI nr
Match:
XP_022978568.1 (vegetative cell wall protein gp1-like [Cucurbita maxima])
HSP 1 Score: 141.7 bits (356), Expect = 5.4e-30
Identity = 116/175 (66.29%), Postives = 133/175 (76.00%), Query Frame = 0
Query: 1 MGFSGLRVVVIFALLTASCMAQAPGPA----PSRPPAPATPAPSPVFIPPAPTPSPNRAP 60
MGFSG+R+VVIFAL+ A C AQAP PA PP PATPAPSPV PP+P+ SP RAP
Sbjct: 1 MGFSGVRLVVIFALM-ALCTAQAPAPAHDSPKPMPPTPATPAPSPVAFPPSPSRSPIRAP 60
Query: 61 SPAP--ALPSPAPEGPSPAPAAPAPAPATSAPTPAP-TSTPTPS------PSGSPAAAP- 120
SP+P A PSPA E PSPAP+A APAP T APTP+P TS PTP+ PSGSPA AP
Sbjct: 61 SPSPTSASPSPATEAPSPAPSAHAPAPETKAPTPSPATSAPTPAPSSRPIPSGSPAGAPV 120
Query: 121 VPPIASPPSPTGNEVPSPAPQAPSADNPAGAASHIGGAATFGIAVAATLFAVVLA 162
VPPIASPPSP+ + PSP P+AP+AD+PAGAASHIGGA T GIA+A TL A+V+A
Sbjct: 121 VPPIASPPSPS-TDGPSPMPEAPAADSPAGAASHIGGATTLGIAIAGTLLAMVVA 173
BLAST of Sgr026153 vs. NCBI nr
Match:
XP_022950235.1 (vegetative cell wall protein gp1-like [Cucurbita moschata])
HSP 1 Score: 139.4 bits (350), Expect = 2.7e-29
Identity = 115/179 (64.25%), Postives = 133/179 (74.30%), Query Frame = 0
Query: 1 MGFSGLRVVVIFALLTASCMAQAPGPAPS--------RPPAPATPAPSPVFIPPAPTPSP 60
MG SG+R+VVIFAL+ A C AQAP P P+ PP PATPAPSPV PP+P+ SP
Sbjct: 1 MGSSGVRLVVIFALM-ALCTAQAPAPTPAPAHDSPKPMPPTPATPAPSPVAFPPSPSRSP 60
Query: 61 NRAPSPAP--ALPSPAPEGPSPAPAAPAPAPATSAPTPAP-TSTPTPS------PSGSPA 120
RAPSP+P A PSPA E PSPAP+A APAP T APTP+P TS PTP+ PSGSPA
Sbjct: 61 IRAPSPSPTSASPSPATEAPSPAPSAHAPAPETKAPTPSPATSAPTPAPSSRPVPSGSPA 120
Query: 121 AAP-VPPIASPPSPTGNEVPSPAPQAPSADNPAGAASHIGGAATFGIAVAATLFAVVLA 162
AP VPPIASPPSP+ + PSP P+AP+AD+PAGAASHIGGA T GIA+A TL A+V+A
Sbjct: 121 GAPVVPPIASPPSPS-TDGPSPMPEAPAADSPAGAASHIGGATTLGIAIAGTLLAMVVA 177
BLAST of Sgr026153 vs. ExPASy Swiss-Prot
Match:
Q9FPQ6 (Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii OX=3055 GN=GP1 PE=1 SV=1)
HSP 1 Score: 46.6 bits (109), Expect = 3.1e-04
Identity = 58/117 (49.57%), Postives = 64/117 (54.70%), Query Frame = 0
Query: 24 PGPAPSRPPAPATPAPSPVFIPPAPTPSPNRAPSPAPALPS-PAPEGPSPAPAAPAPAPA 83
P PAP PP+PA P+PSP PP+P P PSPAP P PAP P P P P P
Sbjct: 221 PSPAPPSPPSPAPPSPSPP-APPSPVPPSPAPPSPAPPSPKPPAPPPPPSPPPPPPPRPP 280
Query: 84 TSAPTPAPTSTPTPSPSGSPAAAPVPPIASPPSPTGNEVPSPAPQAPSADNPAGAAS 140
A TP P S P+P PS +P P PP SPPSP PSPAP PS P+ A S
Sbjct: 281 FPANTPMPPSPPSPPPSPAPPTPPTPPSPSPPSPV---PPSPAPVPPSPAPPSPAPS 333
BLAST of Sgr026153 vs. ExPASy TrEMBL
Match:
A0A5D3CNQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003120 PE=4 SV=1)
HSP 1 Score: 171.8 bits (434), Expect = 2.3e-39
Identity = 122/167 (73.05%), Postives = 131/167 (78.44%), Query Frame = 0
Query: 1 MGFSGLRVVVIFALLTASCMAQAPGPAPSRP----PAPATPAPSPVFIPPAPTPSPNRAP 60
MGFSG+R VVIFALLT CMAQAP PAP P P ATPAPSPV +PP+PTP+PNRAP
Sbjct: 1 MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60
Query: 61 SPA--PALPSPAPEGPSPAPAAPAPAPATSAPTPAPTSTPTPSPSGSPAAAPVPPIASPP 120
SP+ P PSPAP+ PSPAP PAPAPA APTP P STPT PSG P VPPIASPP
Sbjct: 61 SPSPTPVSPSPAPDAPSPAPVVPAPAPAPIAPTPTPISTPT--PSGGPV---VPPIASPP 120
Query: 121 SPTGNEVPSPAPQAPSADNPAGAASHIGGAATFGIAVAATLFAVVLA 162
SPTG EVPSPAPQ P ADNPAGAASHIGGAAT GIA+A TLFAV+L+
Sbjct: 121 SPTGIEVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 162
BLAST of Sgr026153 vs. ExPASy TrEMBL
Match:
A0A0A0KG74 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499150 PE=4 SV=1)
HSP 1 Score: 158.7 bits (400), Expect = 2.1e-35
Identity = 114/165 (69.09%), Postives = 125/165 (75.76%), Query Frame = 0
Query: 1 MGFSGLRVVVIFALLTASCMAQAPGPAPSRP----PAPATPAPSPVFIPPAPTPSPNRAP 60
MGFSG+R V+IFALLT CMAQAP PAP P P ATPAPSPV +PP+PTP+PNRAP
Sbjct: 1 MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60
Query: 61 SPAPALPSPAPEGPSPAPAAPAPAPATSAPTPAPTSTPTPSPSGSPAAAPVPPIASPPSP 120
S PSP P PSPAP A +PAPA APTP P STPT PSG P +PPIASPPSP
Sbjct: 61 S-----PSPTPVSPSPAPDAASPAPAPIAPTPTPISTPT--PSGGPV---LPPIASPPSP 120
Query: 121 TGNEVPSPAPQAPSADNPAGAASHIGGAATFGIAVAATLFAVVLA 162
TG EVPSPAPQ P+ADNPAGA SHIGGAAT GIA+A TLF V+L+
Sbjct: 121 TGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS 155
BLAST of Sgr026153 vs. ExPASy TrEMBL
Match:
A0A6J1ITI1 (vegetative cell wall protein gp1-like OS=Cucurbita maxima OX=3661 GN=LOC111478507 PE=4 SV=1)
HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 116/175 (66.29%), Postives = 133/175 (76.00%), Query Frame = 0
Query: 1 MGFSGLRVVVIFALLTASCMAQAPGPA----PSRPPAPATPAPSPVFIPPAPTPSPNRAP 60
MGFSG+R+VVIFAL+ A C AQAP PA PP PATPAPSPV PP+P+ SP RAP
Sbjct: 1 MGFSGVRLVVIFALM-ALCTAQAPAPAHDSPKPMPPTPATPAPSPVAFPPSPSRSPIRAP 60
Query: 61 SPAP--ALPSPAPEGPSPAPAAPAPAPATSAPTPAP-TSTPTPS------PSGSPAAAP- 120
SP+P A PSPA E PSPAP+A APAP T APTP+P TS PTP+ PSGSPA AP
Sbjct: 61 SPSPTSASPSPATEAPSPAPSAHAPAPETKAPTPSPATSAPTPAPSSRPIPSGSPAGAPV 120
Query: 121 VPPIASPPSPTGNEVPSPAPQAPSADNPAGAASHIGGAATFGIAVAATLFAVVLA 162
VPPIASPPSP+ + PSP P+AP+AD+PAGAASHIGGA T GIA+A TL A+V+A
Sbjct: 121 VPPIASPPSPS-TDGPSPMPEAPAADSPAGAASHIGGATTLGIAIAGTLLAMVVA 173
BLAST of Sgr026153 vs. ExPASy TrEMBL
Match:
A0A6J1GF55 (vegetative cell wall protein gp1-like OS=Cucurbita moschata OX=3662 GN=LOC111453383 PE=4 SV=1)
HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 115/179 (64.25%), Postives = 133/179 (74.30%), Query Frame = 0
Query: 1 MGFSGLRVVVIFALLTASCMAQAPGPAPS--------RPPAPATPAPSPVFIPPAPTPSP 60
MG SG+R+VVIFAL+ A C AQAP P P+ PP PATPAPSPV PP+P+ SP
Sbjct: 1 MGSSGVRLVVIFALM-ALCTAQAPAPTPAPAHDSPKPMPPTPATPAPSPVAFPPSPSRSP 60
Query: 61 NRAPSPAP--ALPSPAPEGPSPAPAAPAPAPATSAPTPAP-TSTPTPS------PSGSPA 120
RAPSP+P A PSPA E PSPAP+A APAP T APTP+P TS PTP+ PSGSPA
Sbjct: 61 IRAPSPSPTSASPSPATEAPSPAPSAHAPAPETKAPTPSPATSAPTPAPSSRPVPSGSPA 120
Query: 121 AAP-VPPIASPPSPTGNEVPSPAPQAPSADNPAGAASHIGGAATFGIAVAATLFAVVLA 162
AP VPPIASPPSP+ + PSP P+AP+AD+PAGAASHIGGA T GIA+A TL A+V+A
Sbjct: 121 GAPVVPPIASPPSPS-TDGPSPMPEAPAADSPAGAASHIGGATTLGIAIAGTLLAMVVA 177
BLAST of Sgr026153 vs. ExPASy TrEMBL
Match:
A0A6J1KP28 (classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111497414 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 3.4e-14
Identity = 81/162 (50.00%), Postives = 98/162 (60.49%), Query Frame = 0
Query: 1 MGFSGLRVVVIFALLTASCMAQAPGPAPSRPPAPATPAPSPVFIPPAPTPSPNRAPSPAP 60
MGFSG+R +++ ALL A+CMAQAP P P+ PAPT P++ PAP
Sbjct: 1 MGFSGVRFIMVLALLAATCMAQAPAPVPA----------------PAPTQGPSQPLPPAP 60
Query: 61 ALPSPAPEGPSPAPAAPAPAPATSAPTPAPTSTPTPSPSGSPAAAP-VPPIASPPSPTGN 120
A P+ PS +PA+P PAP TS PTPAP +PSGSPA P VP +ASP
Sbjct: 61 ATPA-----PSSSPASPTPAPETSTPTPAPI-----TPSGSPAGGPVVPRVASP------ 120
Query: 121 EVPSPAPQAPSADNPAGAASHIGGAATFGIAVAATLFAVVLA 162
PS AP+ P ADNP GAAS IG A T G+AVA +L AV+LA
Sbjct: 121 --PSSAPEGPPADNPTGAASQIGRAGTLGMAVAGSLLAVMLA 128
BLAST of Sgr026153 vs. TAIR 10
Match:
AT5G10430.1 (arabinogalactan protein 4 )
HSP 1 Score: 42.0 bits (97), Expect = 5.4e-04
Identity = 69/162 (42.59%), Postives = 85/162 (52.47%), Query Frame = 0
Query: 1 MGFSGLRVVVIFALLTASCMAQAPGPAPSRPPAPATPAPSPVFIPPAPTPSPNRAPSPAP 60
MG ++V ++ AL S +AQAP P P+ P PATP PP TP P P PA
Sbjct: 1 MGSKIVQVFLMLALFATSALAQAPAPTPTATPPPATP-------PPVATPPPVATPPPA- 60
Query: 61 ALPSPAPEGPSPAPAAPAPAPATSAPTPAPTSTPTPSPSGSPAAAPVPPIASPPSPTGNE 120
+PAPA P P A TPAP +TP PS +P+ A V P ASPP+P G
Sbjct: 61 ---------ATPAPATPPP-----AATPAPATTP---PSVAPSPADV-PTASPPAPEGPT 120
Query: 121 V-PSPAPQAPSADNPAGAASHIGGAATFGIAVAATLFAVVLA 162
V PS AP PS +PA +A+ A G A AA ++A VLA
Sbjct: 121 VSPSSAP-GPSDASPAPSAAFSNKAFFAGTAFAAIMYAAVLA 135
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038881138.1 | 1.5e-40 | 76.65 | vegetative cell wall protein gp1-like [Benincasa hispida] | [more] |
KAA0036330.1 | 4.9e-39 | 73.05 | hypothetical protein E6C27_scaffold18G001290 [Cucumis melo var. makuwa] >TYK1272... | [more] |
XP_023544207.1 | 1.3e-31 | 66.48 | vegetative cell wall protein gp1-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022978568.1 | 5.4e-30 | 66.29 | vegetative cell wall protein gp1-like [Cucurbita maxima] | [more] |
XP_022950235.1 | 2.7e-29 | 64.25 | vegetative cell wall protein gp1-like [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Q9FPQ6 | 3.1e-04 | 49.57 | Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii OX=3055 GN=GP1 PE=... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3CNQ6 | 2.3e-39 | 73.05 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0KG74 | 2.1e-35 | 69.09 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499150 PE=4 SV=1 | [more] |
A0A6J1ITI1 | 2.6e-30 | 66.29 | vegetative cell wall protein gp1-like OS=Cucurbita maxima OX=3661 GN=LOC11147850... | [more] |
A0A6J1GF55 | 1.3e-29 | 64.25 | vegetative cell wall protein gp1-like OS=Cucurbita moschata OX=3662 GN=LOC111453... | [more] |
A0A6J1KP28 | 3.4e-14 | 50.00 | classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC11149... | [more] |
Match Name | E-value | Identity | Description | |
AT5G10430.1 | 5.4e-04 | 42.59 | arabinogalactan protein 4 | [more] |