Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCAAAGATGATGATGAAAAATGGCTTTCAAGTGCATGGGGGTTTGAGAAGAAATAATCAAGGAAGCCCAGAGGTTGTTTGCTTTCCCAAAAGTAGAAAGAGATTTGAATTGGGGTATAAACCAATAGCGTCTGAATGGGAAAGGATTCGAGCAAAAAAGAAGGAAGCGGAAAAGTACACATTTGGAGGGACGGGAAGTCGAGCAAGGAAAGATAATGGTACCTTATTTATATGAGACTTTTAAAGCTGATGAAATTCTTTACAGCAATGACCAGCAGGTGAAATGCAACAAAATTCTTGATCCCTTAGTGGCTGCCGTCTCTGAAAGTACAACTATGTCTCATCAGTTAGTCTATTTGTGTCCTCCGAGGTTCGAACTGTGCAATTGGGAAGTCAAAGAGCTACGAGGAGTCACCAGAGAAATGTCAATATAATCATTGTTATGATCCCATTGGCTATGCCTAAGGTCGTGGTGTTATCTTTGTAATAAAGACACTTTACTCTTTTGGTGTAGTGTAAATTCAATCTTGATATTTAATATTTTGTTTTTCTCTATATAAAAGGAAAAAAGATTGTTGGCTCATGCTATTTGTTCCTATCACTTTTCTCTTTCTTTCCCACATTTATTATATTTGTTTCCTTTTTGTCATCTTCTATCTATCACCAATTACGATCCAGGGTCAATAATGATGACTTTAAAGATAAAACCTGCGTTGATTTAAGAGTTGATTTGGAAGTTCCAGTCTATAACTTCGAGCAAAGCGTAGAAGAGGAGTATGATGTGTCACCTGAGCTGTTAAGATTAATAGAATAG
mRNA sequence
ATGGTTGCAAAGATGATGATGAAAAATGGCTTTCAAGTGCATGGGGGTTTGAGAAGAAATAATCAAGGAAGCCCAGAGGTTGTTTGCTTTCCCAAAAGTAGAAAGAGATTTGAATTGGGGTATAAACCAATAGCGTCTGAATGGGAAAGGATTCGAGCAAAAAAGAAGGAAGCGGAAAACAATGACCAGCAGGTGAAATGCAACAAAATTCTTGATCCCTTAGTGGCTGCCGTCTCTGAAAGTACAACTATGTCTCATCAGTTAGTCTATTTGTGTCCTCCGAGGGTCAATAATGATGACTTTAAAGATAAAACCTGCGTTGATTTAAGAGTTGATTTGGAAGTTCCAGTCTATAACTTCGAGCAAAGCGTAGAAGAGGAGTATGATGTGTCACCTGAGCTGTTAAGATTAATAGAATAG
Coding sequence (CDS)
ATGGTTGCAAAGATGATGATGAAAAATGGCTTTCAAGTGCATGGGGGTTTGAGAAGAAATAATCAAGGAAGCCCAGAGGTTGTTTGCTTTCCCAAAAGTAGAAAGAGATTTGAATTGGGGTATAAACCAATAGCGTCTGAATGGGAAAGGATTCGAGCAAAAAAGAAGGAAGCGGAAAACAATGACCAGCAGGTGAAATGCAACAAAATTCTTGATCCCTTAGTGGCTGCCGTCTCTGAAAGTACAACTATGTCTCATCAGTTAGTCTATTTGTGTCCTCCGAGGGTCAATAATGATGACTTTAAAGATAAAACCTGCGTTGATTTAAGAGTTGATTTGGAAGTTCCAGTCTATAACTTCGAGCAAAGCGTAGAAGAGGAGTATGATGTGTCACCTGAGCTGTTAAGATTAATAGAATAG
Protein sequence
MVAKMMMKNGFQVHGGLRRNNQGSPEVVCFPKSRKRFELGYKPIASEWERIRAKKKEAENNDQQVKCNKILDPLVAAVSESTTMSHQLVYLCPPRVNNDDFKDKTCVDLRVDLEVPVYNFEQSVEEEYDVSPELLRLIE
Homology
BLAST of Sgr025966 vs. NCBI nr
Match:
TYK00092.1 (protein NYNRIN-like [Cucumis melo var. makuwa])
HSP 1 Score: 120.2 bits (300), Expect = 1.4e-23
Identity = 72/183 (39.34%), Postives = 101/183 (55.19%), Query Frame = 0
Query: 1 MVAKMMMKNGFQVHGGLRRNNQGSPEVVCFPKSRKRFELGYKPIASEWERIRAKKKEAEN 60
M+AK M+K+GFQ+H GL ++NQG EV+ PK++++F LGYKP+ SEWE++RAKKKE N
Sbjct: 1 MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRN 60
Query: 61 ------------------------------NDQQVKCNKILDPLVAAVSESTTMSHQLVY 120
Q+ + N+ + +A VSE+ ++ H LV+
Sbjct: 61 ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVH 120
Query: 121 LCPP--RVNNDDFKDKTCVDL-----------RVDLEVPVYNFEQSV-EEEYDVSPELLR 140
CPP +NN + K V VD EVP+YN EQ++ E E D+SPELLR
Sbjct: 121 KCPPGFELNNWEIKKTLKVTKGSQKNTRVEGDAVDFEVPIYNLEQNIGEGESDISPELLR 180
BLAST of Sgr025966 vs. NCBI nr
Match:
KAA0043020.1 (uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa])
HSP 1 Score: 115.9 bits (289), Expect = 2.7e-22
Identity = 73/187 (39.04%), Postives = 106/187 (56.68%), Query Frame = 0
Query: 1 MVAKMMMKNGFQVHGGLRRNNQGSPEVVCFPKSRKRFELGYKPIASEWERIRAKKKEAE- 60
M+AK M+K+ FQ+H GL ++NQG +V+ PK++++F LGYKP ASEWE++RAKKKE
Sbjct: 367 MIAKTMIKSCFQMHKGLGKDNQGDSKVISLPKAKEKFGLGYKPAASEWEKVRAKKKEKRS 426
Query: 61 -----------------------------NNDQQVKCNKILDPLVAAVSESTTMSHQLVY 120
+ +Q+ + N+ + +A VSE+T++SH LV+
Sbjct: 427 TLLVGCEMKEERISIPHLFETFKPEELLFDTNQRKRRNEDSEISIAVVSENTSLSHPLVH 486
Query: 121 LCPP--RVNNDDFKDKTC---------------VDLRVDLEVPVYNFEQSVE-EEYDVSP 140
CPP +NN + K KT VD VD +VP+ N EQ++E E+D+SP
Sbjct: 487 QCPPGFELNNWEIK-KTLEVTKGSQKSTRVEGDVDDVVDFKVPICNLEQNIEVGEFDISP 546
BLAST of Sgr025966 vs. NCBI nr
Match:
KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])
HSP 1 Score: 115.9 bits (289), Expect = 2.7e-22
Identity = 74/187 (39.57%), Postives = 104/187 (55.61%), Query Frame = 0
Query: 1 MVAKMMMKNGFQVHGGLRRNNQGSPEVVCFPKSRKRFELGYKPIASEWERIRAKKKEAE- 60
M+AK M+K+GFQ+H GL ++NQG EV+ PK++++F LGYKP+ SE E++RAKKKE
Sbjct: 1453 MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSECEKVRAKKKEKRS 1512
Query: 61 -----------------------------NNDQQVKCNKILDPLVAAVSESTTMSHQLVY 120
+ Q+ + N+ + L+A VSE+T++ H LV+
Sbjct: 1513 ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEILIAVVSENTSLPHPLVH 1572
Query: 121 LCPP--RVNNDDFKDKTC---------------VDLRVDLEVPVYNFEQSV-EEEYDVSP 140
CPP +NN + K KT VD VD EVP+ N EQ++ E E D+SP
Sbjct: 1573 KCPPGFELNNWEIK-KTLKVTKGSQKNTRVEGDVDDAVDFEVPICNLEQNIGEGESDISP 1632
BLAST of Sgr025966 vs. NCBI nr
Match:
KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])
HSP 1 Score: 114.4 bits (285), Expect = 7.9e-22
Identity = 68/190 (35.79%), Postives = 102/190 (53.68%), Query Frame = 0
Query: 1 MVAKMMMKNGFQVHGGLRRNNQGSPEVVCFPKSRKRFELGYKPIASEWERIRAKKKEAE- 60
M+AK M+K+GFQ+H GL ++NQG EV+ PK++++F LGYKP+ SEWE++RAK KE
Sbjct: 964 MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKNKEKRS 1023
Query: 61 -----------------------------NNDQQVKCNKILDPLVAAVSESTTMSHQLVY 120
+ Q+ + N+ + + VSE+T++ H LV+
Sbjct: 1024 ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIEVVSENTSLPHPLVH 1083
Query: 121 LCPP--------------------RVNNDDFKDKTCVDLRVDLEVPVYNFEQSV-EEEYD 140
CPP +++N + + + VD VD EVP+ N EQ++ E E D
Sbjct: 1084 KCPPGFELNNWEIKKTLKVTKGSQKIHNRNTRVEGDVDDTVDFEVPICNLEQNIGEGESD 1143
BLAST of Sgr025966 vs. NCBI nr
Match:
TYK06500.1 (uncharacterized protein E5676_scaffold70G00280 [Cucumis melo var. makuwa])
HSP 1 Score: 103.6 bits (257), Expect = 1.4e-18
Identity = 65/157 (41.40%), Postives = 93/157 (59.24%), Query Frame = 0
Query: 1 MVAKMMMKNGFQVHGGLRRNNQGSPEVVCFPKSRKRFELGYKPIASEWERIRAKKKEAEN 60
M+ K M+K+ FQ+H GL ++NQ +V+ PK++++F LGYKP ASEWE K++ N
Sbjct: 746 MIGKTMIKSCFQMHKGLGKDNQRDSKVISLPKAKEKFGLGYKPAASEWE-----KRKRRN 805
Query: 61 NDQQVKCNKILDPLVAAVSESTTMSHQLVYLCPP--RVNNDDFKDKTC------------ 120
D ++ +A VSE+T++SH LV+ C P +NN + K KT
Sbjct: 806 EDSEIS--------IAVVSENTSLSHPLVHQCLPGFELNNWEIK-KTLEVTKGSQKSTRV 865
Query: 121 ---VDLRVDLEVPVYNFEQSVE-EEYDVSPELLRLIE 140
VD VD +VP+ N EQ++E E D+SPELLRLIE
Sbjct: 866 EGDVDDIVDFKVPICNLEQNIEVGESDISPELLRLIE 888
BLAST of Sgr025966 vs. ExPASy TrEMBL
Match:
A0A5D3BMZ2 (Protein NYNRIN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00450 PE=4 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 7.0e-24
Identity = 72/183 (39.34%), Postives = 101/183 (55.19%), Query Frame = 0
Query: 1 MVAKMMMKNGFQVHGGLRRNNQGSPEVVCFPKSRKRFELGYKPIASEWERIRAKKKEAEN 60
M+AK M+K+GFQ+H GL ++NQG EV+ PK++++F LGYKP+ SEWE++RAKKKE N
Sbjct: 1 MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRN 60
Query: 61 ------------------------------NDQQVKCNKILDPLVAAVSESTTMSHQLVY 120
Q+ + N+ + +A VSE+ ++ H LV+
Sbjct: 61 ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVH 120
Query: 121 LCPP--RVNNDDFKDKTCVDL-----------RVDLEVPVYNFEQSV-EEEYDVSPELLR 140
CPP +NN + K V VD EVP+YN EQ++ E E D+SPELLR
Sbjct: 121 KCPPGFELNNWEIKKTLKVTKGSQKNTRVEGDAVDFEVPIYNLEQNIGEGESDISPELLR 180
BLAST of Sgr025966 vs. ExPASy TrEMBL
Match:
A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)
HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 74/187 (39.57%), Postives = 104/187 (55.61%), Query Frame = 0
Query: 1 MVAKMMMKNGFQVHGGLRRNNQGSPEVVCFPKSRKRFELGYKPIASEWERIRAKKKEAE- 60
M+AK M+K+GFQ+H GL ++NQG EV+ PK++++F LGYKP+ SE E++RAKKKE
Sbjct: 1453 MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSECEKVRAKKKEKRS 1512
Query: 61 -----------------------------NNDQQVKCNKILDPLVAAVSESTTMSHQLVY 120
+ Q+ + N+ + L+A VSE+T++ H LV+
Sbjct: 1513 ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEILIAVVSENTSLPHPLVH 1572
Query: 121 LCPP--RVNNDDFKDKTC---------------VDLRVDLEVPVYNFEQSV-EEEYDVSP 140
CPP +NN + K KT VD VD EVP+ N EQ++ E E D+SP
Sbjct: 1573 KCPPGFELNNWEIK-KTLKVTKGSQKNTRVEGDVDDAVDFEVPICNLEQNIGEGESDISP 1632
BLAST of Sgr025966 vs. ExPASy TrEMBL
Match:
A0A5A7TI68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00990 PE=4 SV=1)
HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 73/187 (39.04%), Postives = 106/187 (56.68%), Query Frame = 0
Query: 1 MVAKMMMKNGFQVHGGLRRNNQGSPEVVCFPKSRKRFELGYKPIASEWERIRAKKKEAE- 60
M+AK M+K+ FQ+H GL ++NQG +V+ PK++++F LGYKP ASEWE++RAKKKE
Sbjct: 367 MIAKTMIKSCFQMHKGLGKDNQGDSKVISLPKAKEKFGLGYKPAASEWEKVRAKKKEKRS 426
Query: 61 -----------------------------NNDQQVKCNKILDPLVAAVSESTTMSHQLVY 120
+ +Q+ + N+ + +A VSE+T++SH LV+
Sbjct: 427 TLLVGCEMKEERISIPHLFETFKPEELLFDTNQRKRRNEDSEISIAVVSENTSLSHPLVH 486
Query: 121 LCPP--RVNNDDFKDKTC---------------VDLRVDLEVPVYNFEQSVE-EEYDVSP 140
CPP +NN + K KT VD VD +VP+ N EQ++E E+D+SP
Sbjct: 487 QCPPGFELNNWEIK-KTLEVTKGSQKSTRVEGDVDDVVDFKVPICNLEQNIEVGEFDISP 546
BLAST of Sgr025966 vs. ExPASy TrEMBL
Match:
A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22
Identity = 68/190 (35.79%), Postives = 102/190 (53.68%), Query Frame = 0
Query: 1 MVAKMMMKNGFQVHGGLRRNNQGSPEVVCFPKSRKRFELGYKPIASEWERIRAKKKEAE- 60
M+AK M+K+GFQ+H GL ++NQG EV+ PK++++F LGYKP+ SEWE++RAK KE
Sbjct: 964 MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKNKEKRS 1023
Query: 61 -----------------------------NNDQQVKCNKILDPLVAAVSESTTMSHQLVY 120
+ Q+ + N+ + + VSE+T++ H LV+
Sbjct: 1024 ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIEVVSENTSLPHPLVH 1083
Query: 121 LCPP--------------------RVNNDDFKDKTCVDLRVDLEVPVYNFEQSV-EEEYD 140
CPP +++N + + + VD VD EVP+ N EQ++ E E D
Sbjct: 1084 KCPPGFELNNWEIKKTLKVTKGSQKIHNRNTRVEGDVDDTVDFEVPICNLEQNIGEGESD 1143
BLAST of Sgr025966 vs. ExPASy TrEMBL
Match:
A0A5D3C587 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00280 PE=4 SV=1)
HSP 1 Score: 103.6 bits (257), Expect = 6.8e-19
Identity = 65/157 (41.40%), Postives = 93/157 (59.24%), Query Frame = 0
Query: 1 MVAKMMMKNGFQVHGGLRRNNQGSPEVVCFPKSRKRFELGYKPIASEWERIRAKKKEAEN 60
M+ K M+K+ FQ+H GL ++NQ +V+ PK++++F LGYKP ASEWE K++ N
Sbjct: 746 MIGKTMIKSCFQMHKGLGKDNQRDSKVISLPKAKEKFGLGYKPAASEWE-----KRKRRN 805
Query: 61 NDQQVKCNKILDPLVAAVSESTTMSHQLVYLCPP--RVNNDDFKDKTC------------ 120
D ++ +A VSE+T++SH LV+ C P +NN + K KT
Sbjct: 806 EDSEIS--------IAVVSENTSLSHPLVHQCLPGFELNNWEIK-KTLEVTKGSQKSTRV 865
Query: 121 ---VDLRVDLEVPVYNFEQSVE-EEYDVSPELLRLIE 140
VD VD +VP+ N EQ++E E D+SPELLRLIE
Sbjct: 866 EGDVDDIVDFKVPICNLEQNIEVGESDISPELLRLIE 888
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK00092.1 | 1.4e-23 | 39.34 | protein NYNRIN-like [Cucumis melo var. makuwa] | [more] |
KAA0043020.1 | 2.7e-22 | 39.04 | uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa] | [more] |
KAA0033221.1 | 2.7e-22 | 39.57 | uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa] | [more] |
KAA0065293.1 | 7.9e-22 | 35.79 | uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa] | [more] |
TYK06500.1 | 1.4e-18 | 41.40 | uncharacterized protein E5676_scaffold70G00280 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BMZ2 | 7.0e-24 | 39.34 | Protein NYNRIN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G... | [more] |
A0A5A7SUT0 | 1.3e-22 | 39.57 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84... | [more] |
A0A5A7TI68 | 1.3e-22 | 39.04 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7VAU5 | 3.8e-22 | 35.79 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3C587 | 6.8e-19 | 41.40 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
Match Name | E-value | Identity | Description | |