Sgr025022 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr025022
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	exosome complex component RRP4 homolog
Location	tig00002854: 1407841 .. 1413992 (+)
RNA-Seq Expression	Sgr025022
Synteny	Sgr025022

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGGAACTCCAAATCCTCCAAGTGCAATCCCGTGTGCGAGAAAATTCTCAAGGCTCTTGCCGGGTATCCCAATTTCATCAGATTCCGTCCTCTCCCAAACCGCCAGGAAGAACCCAAGAACGAGGCTCCACCACCGCTTGAAGGGAGAATCAAGGATAACAAAGAACTGGTTCGCTCCCATTCTCTGCAAATCCACGCTCACGAAGATAATAATGTCGCAACCAAAATGAAGAAAAAACAAAAGCCCATCAAGTTAGAGCAACCGGTGGCCAAAGTTGCAGATCATGGTCATGGGGGAGAAAAGCAGATTGGAGGTGATAAGGCAGGCAAAAAATCAGGAGAAGACGTAAACGATGTGTTTAGTGATTACATCACTCGGGCAAAACGTAGGCTCGGAAGCATATCAATCAAGCGACATGATTCGGGTAACAAGGGAAAGGAGAACGTCAAAGACGATCAGCGCTTTTCAGATTATATCATTCGCGCTAAGAATAAGCTCAGGGCTACCTCCTCAAGTGTGGGATGGAGCAAAGGTACCTCCATAAAGCGAGCATAGGAAGGAGACGGCAGCTAAAACCAGAACAACGAGTTGTGTCTGTTTCACAAATAACGGTGGTGATGGTGAAAGTCGGTTGGTTTTATGCATTACATTACATTGGCAGCTCTCTGAGTCTTAAGTTTGGTTTTTTTTCCCTTCTCCGTTTGTTTTGCTTTATGGGTTTTACTGATTTGCACATTAATTGTGGTTGTTTTGATTCAAGCGCCAATAGTACAGGTCTGTAATTCAGTGGATTAAATTATTTAAGTCTTCATATCAACATATACTATTTAATTAAATAAGTGTGATTTTATATTTAGCATCATATATCGTGTCATTTGAAGACGTATTTATCGTAGAGATAGTGTGAAAAGACGGACACCTACACCAATTTCTCAATAAAGATCCCACCGCTAAAATGGAGAAGAGATGAGCCCAAGTGTTAATTCAATCCTCTCACAAGCCCAGCCCAAAACTTTTTTTACCGAACCTACCTACTCCGTAGGGGAGATAAAAAAACCAACCGAACCGGTCCGGACTGATTTGGTTCGATTATTCAAAAAAATTGGACTTGGTCCAAATATGAAAAAACCGAAAATGATCGGTTGGGTCAATTTTCTGATTAATAAACCGAACCGGATCCCACACCCTTTTTAACACTCCAGCAGCCCAATCTCATTCAGCCCAGCCCACCTACGGTTATTGAAAAAAGTATAAAAAAAAGAAAAAGAAAAAGAAAAGGAATGGTATACAAACCCTAGCCCCTCCCCTCCCCCTCTTATCAGTGTCACCCCACTTCCCCTTCTCTCTCTCTTCCTTCAAGTCGCTCCCCCTCCCTCTTCAGCACTGTCGTGCGGCCCCAACGCCCCCTCCCTCGCGTTGCGCTTAATGCTACTGCCGCTCCGCCCCACCCGCCCTCAGTTCGCTGACGCCGGCTCACCATTTTCTACTTTGTCTCGTTGCGTCGCACCTTCCATCGTCTTTCGATTTCTTCGTCTCAGATTTCAGGTACGCTGCTCAATTCGTATATCTTTTACGTTTCAGACATCTGAGAGATTTTTGTTTATTATATTTCCAAACCGAGAAAGCCGAACCAATCGGTTCGGTTGAAAATCGATTTTGTTCCATATTAGACATCGGTTCGTTTGTGCAATATCCCAAACCGAAAACATCGATTCGGTCCGTTTTAGACTCAACCAAAATAATCAAACCCATGTTCTGCTACTCGGCACTCGGTGAGGCAGTTTATTATCCTTTATTTTTACTAAACTAATCACAAAAAAGTATAAACAATTTGAAAACATATTGCGCTAATTTTTGTTAGTTTCATTTAAATTCCCTCGAATGCTCATAATTTGCTTTGGTTTGATTTTTAACCAAATAAAAAATTGAACCCAGGCTTCGGCATTTTTGTCGTGTCTATGAACTTTTGGCGCTTCCCCGTATATTTGTCATCGATTTCACTCTCAGACTTCAGTTGAGTCTTCCTCTTCGTCTGTCTCTCCTCTCCTAGCTCTCTCTCCTCTTCAATTCCAATTCTTCTTCCTCACCTACACCCGCCCGTCTCCTCTCCTTCCCTTCTAATTTCTTTTCGGTTCTCCATCTACTGCTCGCTAGACCCTAGTTGTTCCGTCAGTGCTCTTCCTCTCCCATTTCGTGAGTCTCCTTCGACAGATATTACTTTATTCACAAAGAAGAAAGCTGCCTGTGCTTCTCTGATTCATTCGGTAGAGGACTGAGACGCGAGGGATAACAAAAAAAAAATCGTGCTGAAGGGAGTTGCTAAGTTAAAGTTTGCCTTTAAATTTAACATCTTATTATGATTACCAACGCTCCCAACCTCTCCATACCAAAACGAAATGAAATCTGACTTCTTTTTCTTTTGTGTCTTCTTTAAATAGTCGGCTGTTAACAATAGCATTGCTAACTGTCCTAACCGATTGAGATTTAGACTTTTCTTTTGGACGCAATTATTGATAATGAATTGTAATTCATTTTATTGTTATTTTTTAGATAACAACAATTTTTATCTTTACAATTTATTTGAAGTTGACAAATAATAACTAATTAAAATTATTAGAGACAAGTTCGTAATATCTCATGATAAAAATACTTTAACCAAAAAAGGTTAGTAGATATTTTAATTGGAAGAATATTTATAGAGAATATTATTTAATTTTATTGCTATGTTATTTAATAATAATGGGTAGAGTAGAAGAGAAATAACCTAGGGATCCGAATTCGTGCTTAACTTGTTTTTTCTACTGCTCAATTTGAGCACAACTCTACAGTTAAGGCATTAGTAACTTCCTATAGGTTAAAGGTTCAAATATCTACCTCTATATTCGTAATGCTATATTCCAAGAAACTCGTTTCTCCCGTTCACTTTGTCCTACCTATTTACAAGTAGGTATGGATTTTCTTGATCAGCTCCTTCCCACTTACCGAACAATCCTCTCTTTATTTCCTTGTTTGTATTGCGTAAATATTTTGTTCAAGTATGTCTGTTTTGGTGATGAGCATGTGAAGTTTAGGCTTTTACTCTCCCTGTAGCACCAGTATGTCTAACTTAGAGATTTTCTGAATGCAGATATGAGAGGATTACAGATTTCTTTGTACCAAACTCAGAAGATTCGGCTCCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCAAAGGCAAATTCCGATGCTTCTGTTATAGTTGCTGATACTATCCCTGTCAATTACGAGGATGGCGTCCTCAAGTATATAATTTCCTCACTATCTTTATATCATAGATGCTTGGATTGTTTTTATGTCAGTTTTAATGATTATATGTGTGATATGGGTGCATTGAGCTTTAATTGAAATTTGTATACAGGGGACATGGGACCCTTGACCTGCATGGTGAAGTGGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCCTTACGTGCCAGGTTGCCCAAGAAATTTTGTAATTTGATTTTCCTTGATGATAGTTTAATGTCTCTCTTTCTTGGGTTTCTTGTTATCATGCATTCTCTAATGCAATTGTCTGTATTGGTTATTAGATATAAACCGGAGGTTGGTGATATTGTAGTGGGGCGTGTTACGGAGGTAAAAGTAAATGATTTTTATTTCTTTTTCAATTGAATGTAACGGCAAGTTTGTGAGAAAAGAGACAGAGAACTTATTCGGGAGTCAAGCATTAGATTCTTGATGCAGAGTAATGAATTGTTTTAGACATGGTTATGATGTTGTAAATAAGAAAAATGTGTTACGATGCTTTTTATCTCATTTCTCTCCTGTAGTCTGATGTTGTCTTATTCAGGTTGCTCCAAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGGTATTGGTGACCTCCATGCCTATAGTTGCGTCTAATGATGAATCAACTATGCGTTCTGCTGAATTTTATGGAAAATTTTATTGAATTTATTGCAAAATTTGCTAAAATTGATTTTTTTTAGAGTGGTTGCATCTGTCCTAAACCTGGATTAACTGTTTGGAATTTTGATGTATTCTTTTTATTCTTAGAGGCGGCGAACTGCAGTGGATGAACTCAACATGCGGAGTATTTTTGAAGAAAATGATGTTATTTGTGTAAGTTTTATAATTTTTACTTTCACCTATTGTGAAAGAAGGTGCTACTGATTTTCTCACGTGCCATGCCTATAGTGGGTTTTCTCCTATGTTCTTACATTTTTGGAAAATGAACTTTAGTTAATTTTTTTTGTTCGACAATTACAATATTTGATTTTTATGAAATTTGTAAGATTTTTATATTTTAGGTAGGTGACCGCCGTAGGATTAGAACCCATAACTTTTTAACTTGCCCCCTTGACCTTTAGGCCAACCCATGGTGGCCATGGTGGTGAACTTTTGTTGGTTAACTCACAAGCCATTTGTAAAAAGGTATGGAGCATAGGCTTGGGCACATTGGATAGATGCACCTTTGGCAGTTGGCACCTTGCCTGCTGCTGGGCCAGGTGTCTTAAAGCAAGTGCCCTTTTGTGCCTTGTTGCTCCTCTATGAGGTCCCAAAATTTTTTTGACACTCTAATGCTGTTCTTCATTTTCTTGCGCTTAAGTGGCCTTTACTAAGTTTATCCTTCTGCTTTTCTCTCCTTTTACTTTATCAACAAGTGATTTAATATATCTATTATTGCTTCTTTTTCTCACCTCTCTCGGACTCAAGTCATGCCTTGTGCCTTGCACAAAGGCTTGAAGAGGCGTACTTTGGCACTTGAGTGTACCTTGCACTATTAGTAAACACTGCTCTCACCAATAATTGTTTCACATGCTTTAGTTACCAATTAAAAAAAAAATAACATCACCACAACTTTTCTCAGGCAGAAGTTCGTGGTTTTCAGCATGATGGCCTGCACCTTCAAGCAAGAAGCCAGAAATATGGGAAGGTAAAATGAGTCTCTCATTTCTAAGCTCTTGGATGTTGATGTAAATTACAAAATAAGCTTCAGAAATATATGTTCATACGCCTCTCACATCCTCACTGGTTTCTTAAGGAGATTCCATTAAAGGATTCTTGGGAGCATGTGAGTACTAATTTATTTTAGAATCTCCTTGGGCAAATTCTATTAGTTAAAACAAATTGTGGAGAGGAATATAAATTTTGTTGCACTGGAATAAGGGAGAAAGGGCTGTGCCTGTGTATAAGGTGAAAAGATTGATGAGTGGAAATCATTGAGAATATAAAGGGGAGCTGCGAGATGGGTTGAGGGAAGCAACAATGAAGTATAAGATAGTAAATAAAAAAATTATCCTGGGGCATCTAAAAAGAGTGATCCACTGCTAAGGCGTGAAATGTGAATGGCTATAAACAATGATAAAACGACATGAAAATTACTGACTGTTCTATTTTCCTTATTTGCTTAGTATGATTTGTTCTTCAAAGTCTTGGAGGCTACCTATATTTGAAGATGATATCTTCGTTCTCATGGTTATTATGTTCCTGACGACAAATTTTCTGGCATCATCTCATCTTAGTTCTTTATGACCTTTGTAAGTCTTTCTTCCATGATAAATAAGATTAATGCATTTGTACTCAGCTTGAGAGAGGTCAGCTGCTCACAGTATCACCATATCTAGTGAAGAGACGCAAACAACACTTCCATCATTTGGAGAAGTACGGAATTGACTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACTAAAGGGTCCAGAGTCTGAAGGAAATTTTGGTAGCCTTGAAGAGCAAGAAAAATATGTACCCCATTAGAGACTCGTCGGAATATATGCAGGACTGCAAATGCCGTTCGGGTATTGTCCACCTTAGGTTTCATAATTACCGTAGAAGTTATAGTGGAGACAGTTAATTTAAGTATCTCTCTGAATATCGATGTGCATGAAATGCTCGGTTCAGAGTTCTGCGTTCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTTGAGCAAGAAGAGGGGATGA

mRNA sequence

ATGGGAAGGAACTCCAAATCCTCCAAGTGCAATCCCGTGTGCGAGAAAATTCTCAAGGCTCTTGCCGGGTATCCCAATTTCATCAGATTCCGTCCTCTCCCAAACCGCCAGGAAGAACCCAAGAACGAGGCTCCACCACCGCTTGAAGGGAGAATCAAGGATAACAAAGAACTGGTTCGCTCCCATTCTCTGCAAATCCACGCTCACGAAGATAATAATGTCGCAACCAAAATGAAGAAAAAACAAAAGCCCATCAAGTTAGAGCAACCGGTGGCCAAAGTTGCAGATCATGGTCATGGGGGAGAAAAGCAGATTGGAGGTGATAAGGCAGGCAAAAAATCAGGAGAAGACGTAAACGATGTGTTTAGTGATTACATCACTCGGGCAAAACGTAGGCTCGGAAGCATATCAATCAAGCGACATGATTCGGGTAACAAGGGAAAGGAGAACGTCAAAGACGATCAGCGCTTTTCAGATTATATCATTCGCGCTAAGAATAAGCTCAGGGCTACCTCCTCAAGTGTGGGATGGAGCAAAGATATGAGAGGATTACAGATTTCTTTGTACCAAACTCAGAAGATTCGGCTCCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCAAAGGCAAATTCCGATGCTTCTGTTATAGTTGCTGATACTATCCCTGTCAATTACGAGGATGGCGTCCTCAAGGGACATGGGACCCTTGACCTGCATGGTGAAGTGGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCCTTACGTGCCAGATATAAACCGGAGGTTGGTGATATTGTAGTGGGGCGTGTTACGGAGGTTGCTCCAAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGCGGCGAACTGCAGTGGATGAACTCAACATGCGGAGTATTTTTGAAGAAAATGATGTTATTTGTGCAGAAGTTCGTGGTTTTCAGCATGATGGCCTGCACCTTCAAGCAAGAAGCCAGAAATATGGGAAGCTTGAGAGAGGTCAGCTGCTCACAGTATCACCATATCTAGTGAAGAGACGCAAACAACACTTCCATCATTTGGAGAAGTACGGAATTGACTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACTAAAGGGTCCAGAGACTGCAAATGCCGTTCGGGTATTGTCCACCTTAGGTTTCATAATTACCGTAGAAGTTATAGTGGAGACAGTTAATTTAAGTATCTCTCTGAATATCGATGTGCATGAAATGCTCGGTTCAGAGTTCTGCGTTCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTTGAGCAAGAAGAGGGGATGA

Coding sequence (CDS)

ATGGGAAGGAACTCCAAATCCTCCAAGTGCAATCCCGTGTGCGAGAAAATTCTCAAGGCTCTTGCCGGGTATCCCAATTTCATCAGATTCCGTCCTCTCCCAAACCGCCAGGAAGAACCCAAGAACGAGGCTCCACCACCGCTTGAAGGGAGAATCAAGGATAACAAAGAACTGGTTCGCTCCCATTCTCTGCAAATCCACGCTCACGAAGATAATAATGTCGCAACCAAAATGAAGAAAAAACAAAAGCCCATCAAGTTAGAGCAACCGGTGGCCAAAGTTGCAGATCATGGTCATGGGGGAGAAAAGCAGATTGGAGGTGATAAGGCAGGCAAAAAATCAGGAGAAGACGTAAACGATGTGTTTAGTGATTACATCACTCGGGCAAAACGTAGGCTCGGAAGCATATCAATCAAGCGACATGATTCGGGTAACAAGGGAAAGGAGAACGTCAAAGACGATCAGCGCTTTTCAGATTATATCATTCGCGCTAAGAATAAGCTCAGGGCTACCTCCTCAAGTGTGGGATGGAGCAAAGATATGAGAGGATTACAGATTTCTTTGTACCAAACTCAGAAGATTCGGCTCCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCAAAGGCAAATTCCGATGCTTCTGTTATAGTTGCTGATACTATCCCTGTCAATTACGAGGATGGCGTCCTCAAGGGACATGGGACCCTTGACCTGCATGGTGAAGTGGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCCTTACGTGCCAGATATAAACCGGAGGTTGGTGATATTGTAGTGGGGCGTGTTACGGAGGTTGCTCCAAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGCGGCGAACTGCAGTGGATGAACTCAACATGCGGAGTATTTTTGAAGAAAATGATGTTATTTGTGCAGAAGTTCGTGGTTTTCAGCATGATGGCCTGCACCTTCAAGCAAGAAGCCAGAAATATGGGAAGCTTGAGAGAGGTCAGCTGCTCACAGTATCACCATATCTAGTGAAGAGACGCAAACAACACTTCCATCATTTGGAGAAGTACGGAATTGACTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACTAAAGGGTCCAGAGACTGCAAATGCCGTTCGGGTATTGTCCACCTTAGGTTTCATAATTACCGTAGAAGTTATAGTGGAGACAGTTAATTTAAGTATCTCTCTGAATATCGATGTGCATGAAATGCTCGGTTCAGAGTTCTGCGTTCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTTGAGCAAGAAGAGGGGATGA

Protein sequence

MGRNSKSSKCNPVCEKILKALAGYPNFIRFRPLPNRQEEPKNEAPPPLEGRIKDNKELVRSHSLQIHAHEDNNVATKMKKKQKPIKLEQPVAKVADHGHGGEKQIGGDKAGKKSGEDVNDVFSDYITRAKRRLGSISIKRHDSGNKGKENVKDDQRFSDYIIRAKNKLRATSSSVGWSKDMRGLQISLYQTQKIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLHGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTEDMMIEDQVNKSELKGPETANAVRVLSTLGFIITVEVIVETVNLSISLNIDVHEMLGSEFCVLTAEKEAERRTLSKKRG

Homology

[Close]

BLAST of Sgr025022 vs. NCBI nr
Match: XP_022995373.1 (exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995375.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995376.1 exosome complex component RRP4 homolog [Cucurbita maxima])

HSP 1 Score: 546.2 bits (1406), Expect = 2.8e-151
Identity = 281/327 (85.93%), Postives = 296/327 (90.52%), Query Frame = 0


Query: 181 MRGLQISLYQTQKIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLH 240
           MRGLQ+SL QTQKIRLQRALETLESISSKANSDASV+VADTIP+NYEDGVLKGHGTLDL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 241 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 300
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 301 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 360
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 361 LLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTEDMMIEDQVNKSELKGP 420
           LLTVSPYLVKRRKQHFHHLE+YGIDLILGCNGFIWIGEHVDPTEDMM+ED +NKSE KG 
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 421 E-------------------------TANAVRVLSTLGFIITVEVIVETVNLSISLNIDV 480
           +                         TANA+RVLS LGFI++VEVI+ETV+LSISLNIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 481 HEMLGSEFCVLTAEKEAERRTLSKKRG 483
           HEMLGSEFCVLTAEKEAERRT SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Sgr025022 vs. NCBI nr
Match: KAG6606437.1 (Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 545.8 bits (1405), Expect = 3.7e-151
Identity = 281/327 (85.93%), Postives = 296/327 (90.52%), Query Frame = 0


Query: 181 MRGLQISLYQTQKIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLH 240
           MRGLQ+SL QTQKIRLQRALETLESISSKANSDASV+VADTIP+NYEDGVLKGHGTLDL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 241 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 300
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 301 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 360
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 361 LLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTEDMMIEDQVNKSELKGP 420
           LLTVSPYLVKRRKQHFHHLE+YGIDLILGCNGFIWIGEHVDPTEDMM+ED +NKSE KG 
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 421 E-------------------------TANAVRVLSTLGFIITVEVIVETVNLSISLNIDV 480
           +                         TANA+RVLS LGFI++VEVI+ETV+LSISLNIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 481 HEMLGSEFCVLTAEKEAERRTLSKKRG 483
           HEMLGSEFCVLTAEKEAERRT SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Sgr025022 vs. NCBI nr
Match: XP_023533481.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023533482.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 544.3 bits (1401), Expect = 1.1e-150
Identity = 280/327 (85.63%), Postives = 295/327 (90.21%), Query Frame = 0


Query: 181 MRGLQISLYQTQKIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLH 240
           MRGLQ+SL QTQKIRLQRALETLESISSKANSDASV+VADTIP+NYEDGVLKGHGTLDL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 241 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 300
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 301 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 360
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 361 LLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTEDMMIEDQVNKSELKGP 420
           LLTVSPYLVKRRKQHFHHLE+YGIDLILGCNGFIWIGEHVDPTEDMM+ED +NKSE KG 
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 421 E-------------------------TANAVRVLSTLGFIITVEVIVETVNLSISLNIDV 480
           +                         TANA+RVLS LGFI++VEVI+ETV+L ISLNIDV
Sbjct: 241 KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV 300

Query: 481 HEMLGSEFCVLTAEKEAERRTLSKKRG 483
           HEMLGSEFCVLTAEKEAERRT SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Sgr025022 vs. NCBI nr
Match: XP_022931250.1 (exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931251.1 exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931253.1 exosome complex component RRP4 homolog [Cucurbita moschata])

HSP 1 Score: 541.6 bits (1394), Expect = 7.0e-150
Identity = 279/325 (85.85%), Postives = 294/325 (90.46%), Query Frame = 0


Query: 181 MRGLQISLYQTQKIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLH 240
           MRGLQ+SL QTQKIRLQRALETLESISSKANSDASV+VADTIP+NYEDGVLKGHGTLDL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 241 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 300
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 301 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 360
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 361 LLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTEDMMIEDQVNKSELKGP 420
           LLTVSPYLVKRRKQHFHHLE+YGIDLILGCNGFIWIGEHVDPTEDMM+ED +NKSE KG 
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 421 E-------------------------TANAVRVLSTLGFIITVEVIVETVNLSISLNIDV 480
           +                         TANA+RVLS LGFI++VEVI+ETV+LSISLNIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

[Close]

BLAST of Sgr025022 vs. NCBI nr
Match: XP_022155677.1 (exosome complex component RRP4 homolog isoform X1 [Momordica charantia])

HSP 1 Score: 541.2 bits (1393), Expect = 9.1e-150
Identity = 281/329 (85.41%), Postives = 290/329 (88.15%), Query Frame = 0


Query: 180 DMRGLQISLYQTQKIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDL 239
           DMRGLQISL QTQKIRLQ ALE+LESIS KANSDASVIVADTIPVNYEDG+LKGHGT DL
Sbjct: 13  DMRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDL 72

Query: 240 HGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVL 299
           HGEVVAT+CGVVERVNKLIYVRALRARYKPEVGDIVVGRV EVAPKRWRLDINYSQ AVL
Sbjct: 73  HGEVVATVCGVVERVNKLIYVRALRARYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 132

Query: 300 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 359
           MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG
Sbjct: 133 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 192

Query: 360 QLLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTEDMMIEDQVNKSELKG 419
           QLLTVSPYLVKRRKQHFHHLE+YGIDLILGCNGFIWIGEHVDP EDMMIEDQVNK E KG
Sbjct: 193 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 252

Query: 420 PET--------------------------ANAVRVLSTLGFIITVEVIVETVNLSISLNI 479
           P++                          ANAVRVLSTLGFI+TVEVI+ETVNLS+SLNI
Sbjct: 253 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 312

Query: 480 DVHEMLGSEFCVLTAEKEAERRTLSKKRG 483
           DVHEMLGSEFCVL AE E ERRT SKKRG
Sbjct: 313 DVHEMLGSEFCVLVAENEVERRTSSKKRG 341

[Close]

BLAST of Sgr025022 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 7.6e-115
Identity = 209/320 (65.31%), Postives = 255/320 (79.69%), Query Frame = 0


Query: 181 MRGLQISLYQTQKIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLH 240
           MR LQ+ L QTQK+R +RA+E L+S+SS ANSDASVIV D+IPVN++D  LKGHGT ++ 
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 241 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 300
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 301 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 360
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 361 QLLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTEDMMIEDQVNKSELKG 420
           QLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+  + M I+DQ ++  +  
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDEEMISS 242

Query: 421 PET------------------ANAVRVLSTLGFIITVEVIVETVNLSISLNIDVHEMLGS 480
             T                   NA+RVLS LGF +T+EVI+ETVNLS S NID+H+MLGS
Sbjct: 243 SSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNIDIHDMLGS 302

Query: 481 EFCVLTAEKEAERRTLSKKR 482
           EF V+ AE EAERR   +K+
Sbjct: 303 EFHVVVAENEAERRRTKRKK 322

[Close]

BLAST of Sgr025022 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.8e-46
Identity = 107/213 (50.23%), Postives = 139/213 (65.26%), Query Frame = 0


Query: 193 KIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLHGEVVATICGVVE 252
           ++RL +A + L     + +    V+  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 253 RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 312
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 313 RRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 372
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 373 RKQHFHHLEKYGIDLILGCNGFIWI---GEHVD 402
           +K HFH L   G  +ILG NGFIWI    EH D
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

[Close]

BLAST of Sgr025022 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.2e-45
Identity = 105/214 (49.07%), Postives = 138/214 (64.49%), Query Frame = 0


Query: 193 KIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLHGEVVATICGVVE 252
           ++RL  A + L     + +    V+  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 253 RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 312
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 313 RRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 372
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 373 RKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTED 406
           +K HFH L   G  +ILG NGFIW+    +  ED
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

[Close]

BLAST of Sgr025022 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-44
Identity = 104/205 (50.73%), Postives = 134/205 (65.37%), Query Frame = 0


Query: 193 KIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLHGEVVATICGVVE 252
           ++RL  A + L     +      V+  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 253 RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 312
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 313 RRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 372
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 373 RKQHFHHLEKYGIDLILGCNGFIWI 397
           +K HFH L   G  +ILG NGFIWI
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWI 205

[Close]

BLAST of Sgr025022 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-44
Identity = 86/170 (50.59%), Postives = 120/170 (70.59%), Query Frame = 0


Query: 231 LKGHGTLDLHGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLD 290
           ++GHGT    G + A++ G V+RVNKLI V+ LR++Y PE+GD+++G++ EV PKRW++D
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVD 130

Query: 291 INYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQAR 350
           I   Q+AVLMLSS+NLP GIQRR+   DEL MRS F+E D++ AEV+ +  DG + +  R
Sbjct: 131 IGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTR 190

Query: 351 SQKYGKLERGQLLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEH 400
           S KYGKL  G  L V P LV R K H + L   G+D+IL  NG++W+ +H
Sbjct: 191 SLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKH 239

[Close]

BLAST of Sgr025022 vs. ExPASy TrEMBL
Match: A0A6J1K7S0 (exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490943 PE=4 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 1.4e-151
Identity = 281/327 (85.93%), Postives = 296/327 (90.52%), Query Frame = 0


Query: 181 MRGLQISLYQTQKIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLH 240
           MRGLQ+SL QTQKIRLQRALETLESISSKANSDASV+VADTIP+NYEDGVLKGHGTLDL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 241 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 300
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 301 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 360
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 361 LLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTEDMMIEDQVNKSELKGP 420
           LLTVSPYLVKRRKQHFHHLE+YGIDLILGCNGFIWIGEHVDPTEDMM+ED +NKSE KG 
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 421 E-------------------------TANAVRVLSTLGFIITVEVIVETVNLSISLNIDV 480
           +                         TANA+RVLS LGFI++VEVI+ETV+LSISLNIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 481 HEMLGSEFCVLTAEKEAERRTLSKKRG 483
           HEMLGSEFCVLTAEKEAERRT SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Sgr025022 vs. ExPASy TrEMBL
Match: A0A6J1EXY1 (exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111437483 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 3.4e-150
Identity = 279/325 (85.85%), Postives = 294/325 (90.46%), Query Frame = 0


Query: 181 MRGLQISLYQTQKIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLH 240
           MRGLQ+SL QTQKIRLQRALETLESISSKANSDASV+VADTIP+NYEDGVLKGHGTLDL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 241 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 300
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 301 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 360
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 361 LLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTEDMMIEDQVNKSELKGP 420
           LLTVSPYLVKRRKQHFHHLE+YGIDLILGCNGFIWIGEHVDPTEDMM+ED +NKSE KG 
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 421 E-------------------------TANAVRVLSTLGFIITVEVIVETVNLSISLNIDV 480
           +                         TANA+RVLS LGFI++VEVI+ETV+LSISLNIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

[Close]

BLAST of Sgr025022 vs. ExPASy TrEMBL
Match: A0A6J1DQ00 (exosome complex component RRP4 homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022753 PE=4 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 4.4e-150
Identity = 281/329 (85.41%), Postives = 290/329 (88.15%), Query Frame = 0


Query: 180 DMRGLQISLYQTQKIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDL 239
           DMRGLQISL QTQKIRLQ ALE+LESIS KANSDASVIVADTIPVNYEDG+LKGHGT DL
Sbjct: 13  DMRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDL 72

Query: 240 HGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVL 299
           HGEVVAT+CGVVERVNKLIYVRALRARYKPEVGDIVVGRV EVAPKRWRLDINYSQ AVL
Sbjct: 73  HGEVVATVCGVVERVNKLIYVRALRARYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVL 132

Query: 300 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 359
           MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG
Sbjct: 133 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 192

Query: 360 QLLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTEDMMIEDQVNKSELKG 419
           QLLTVSPYLVKRRKQHFHHLE+YGIDLILGCNGFIWIGEHVDP EDMMIEDQVNK E KG
Sbjct: 193 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKG 252

Query: 420 PET--------------------------ANAVRVLSTLGFIITVEVIVETVNLSISLNI 479
           P++                          ANAVRVLSTLGFI+TVEVI+ETVNLS+SLNI
Sbjct: 253 PKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNI 312

Query: 480 DVHEMLGSEFCVLTAEKEAERRTLSKKRG 483
           DVHEMLGSEFCVL AE E ERRT SKKRG
Sbjct: 313 DVHEMLGSEFCVLVAENEVERRTSSKKRG 341

[Close]

BLAST of Sgr025022 vs. ExPASy TrEMBL
Match: A0A6J1HGD9 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464056 PE=4 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 1.7e-149
Identity = 281/327 (85.93%), Postives = 293/327 (89.60%), Query Frame = 0


Query: 181 MRGLQISLYQTQKIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLH 240
           MR LQISL QTQKIRLQRALE LESISSKANSDASVIVADTIP+NY+DGVLKGHGTLDL+
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 241 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 300
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 301 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 360
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 361 LLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTEDMMIEDQVNKSELKGP 420
           LLTVSPYLVKRRKQHFHHLE+YGIDLI GCNGFIWIGEHVDPTEDMMIEDQVNKSE KG 
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240

Query: 421 E-------------------------TANAVRVLSTLGFIITVEVIVETVNLSISLNIDV 480
           +                         TANA+RVLS LGFI+TVEVI+ETV+LS SLNI+V
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300

Query: 481 HEMLGSEFCVLTAEKEAERRTLSKKRG 483
           HEMLGSEFCVLTAEKEAERRT SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Sgr025022 vs. ExPASy TrEMBL
Match: A0A6J1DNK7 (exosome complex component RRP4 homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022753 PE=4 SV=1)

HSP 1 Score: 538.9 bits (1387), Expect = 2.2e-149
Identity = 280/328 (85.37%), Postives = 289/328 (88.11%), Query Frame = 0


Query: 181 MRGLQISLYQTQKIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLH 240
           MRGLQISL QTQKIRLQ ALE+LESIS KANSDASVIVADTIPVNYEDG+LKGHGT DLH
Sbjct: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60

Query: 241 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 300
           GEVVAT+CGVVERVNKLIYVRALRARYKPEVGDIVVGRV EVAPKRWRLDINYSQ AVLM
Sbjct: 61  GEVVATVCGVVERVNKLIYVRALRARYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVLM 120

Query: 301 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 360
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 361 LLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTEDMMIEDQVNKSELKGP 420
           LLTVSPYLVKRRKQHFHHLE+YGIDLILGCNGFIWIGEHVDP EDMMIEDQVNK E KGP
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGP 240

Query: 421 ET--------------------------ANAVRVLSTLGFIITVEVIVETVNLSISLNID 480
           ++                          ANAVRVLSTLGFI+TVEVI+ETVNLS+SLNID
Sbjct: 241 KSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNID 300

Query: 481 VHEMLGSEFCVLTAEKEAERRTLSKKRG 483
           VHEMLGSEFCVL AE E ERRT SKKRG
Sbjct: 301 VHEMLGSEFCVLVAENEVERRTSSKKRG 328

[Close]

BLAST of Sgr025022 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 415.6 bits (1067), Expect = 5.4e-116
Identity = 209/320 (65.31%), Postives = 255/320 (79.69%), Query Frame = 0


Query: 181 MRGLQISLYQTQKIRLQRALETLESISSKANSDASVIVADTIPVNYEDGVLKGHGTLDLH 240
           MR LQ+ L QTQK+R +RA+E L+S+SS ANSDASVIV D+IPVN++D  LKGHGT ++ 
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 241 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 300
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 301 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 360
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 361 QLLTVSPYLVKRRKQHFHHLEKYGIDLILGCNGFIWIGEHVDPTEDMMIEDQVNKSELKG 420
           QLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+  + M I+DQ ++  +  
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDEEMISS 242

Query: 421 PET------------------ANAVRVLSTLGFIITVEVIVETVNLSISLNIDVHEMLGS 480
             T                   NA+RVLS LGF +T+EVI+ETVNLS S NID+H+MLGS
Sbjct: 243 SSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNIDIHDMLGS 302

Query: 481 EFCVLTAEKEAERRTLSKKR 482
           EF V+ AE EAERR   +K+
Sbjct: 303 EFHVVVAENEAERRRTKRKK 322

The following BLAST results are available for this feature:

BLAST of Sgr025022 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022995373.1	2.8e-151	85.93	exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosom...	[more]
KAG6606437.1	3.7e-151	85.93	Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023533481.1	1.1e-150	85.63	exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02353348...	[more]
XP_022931250.1	7.0e-150	85.85	exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931251.1 exos...	[more]
XP_022155677.1	9.1e-150	85.41	exosome complex component RRP4 homolog isoform X1 [Momordica charantia]	[more]

BLAST of Sgr025022 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVT7	7.6e-115	65.31	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P...	[more]
Q8VBV3	9.8e-46	50.23	Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1	[more]
Q2KID0	2.2e-45	49.07	Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1	[more]
Q13868	1.8e-44	50.73	Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2	[more]
Q09704	1.8e-44	50.59	Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of Sgr025022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7S0	1.4e-151	85.93	exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114909...	[more]
A0A6J1EXY1	3.4e-150	85.85	exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1DQ00	4.4e-150	85.41	exosome complex component RRP4 homolog isoform X1 OS=Momordica charantia OX=3673...	[more]
A0A6J1HGD9	1.7e-149	85.93	exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1DNK7	2.2e-149	85.37	exosome complex component RRP4 homolog isoform X2 OS=Momordica charantia OX=3673...	[more]

BLAST of Sgr025022 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03360.1	5.4e-116	65.31	ribosomal RNA processing 4	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 270..349 e-value: 6.2E-5 score: 32.4
None	No IPR available	GENE3D	2.40.50.100		coord: 216..267 e-value: 7.1E-17 score: 62.7
None	No IPR available	GENE3D	2.40.50.140		coord: 268..357 e-value: 7.1E-19 score: 69.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..117
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 190..475
None	No IPR available	CDD	cd05789	S1_Rrp4	coord: 266..356 e-value: 1.97544E-33 score: 119.577
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 224..262
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 359..399 e-value: 2.8E-12 score: 46.9
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 190..475
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 265..356
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 359..476

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr025022.1	Sgr025022.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding